rna-TanjilR_02521
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Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Homology
BLAST of rna-TanjilR_02521 vs. DB:Swiss
Match: SRS31_ARATH (Serine/arginine-rich splicing factor RS31 OS=Arabidopsis thaliana OX=3702 GN=RS31 PE=1 SV=2) HSP 1 Score: 114.775 bits (286), Expect = 1.731e-53 Identity = 58/88 (65.91%), Postives = 70/88 (79.55%), Query Frame = 2 Query: 1547 LFVLF*QGERGRHPNG---ARENQRPTRTLFVINFDPIRTRDRDIERHFEPYGKIHHVRIRRNFAFVQFETQEDATKALECTHMRSVV 1801
L V + +GERGR P G A N +PT+TLFVINFDPIRT++ DIE+HFEPYGK+ +VRIRRNF+FVQFETQEDATKALE T ++
Sbjct: 67 LSVEWAKGERGR-PRGDAKAPSNLKPTKTLFVINFDPIRTKEHDIEKHFEPYGKVTNVRIRRNFSFVQFETQEDATKALEATQRSKIL 153 HSP 2 Score: 76.6406 bits (187), Expect = 1.731e-53 Identity = 35/39 (89.74%), Postives = 38/39 (97.44%), Query Frame = 1 Query: 1321 AGYAFVYYEDERDAEDAIRVLDNFPFGYEKRRLSVEWAR 1437
+GYAFVY+EDERDAEDAIR LDNFPFGYEKRRLSVEWA+
Sbjct: 35 SGYAFVYFEDERDAEDAIRKLDNFPFGYEKRRLSVEWAK 73 HSP 3 Score: 63.1586 bits (152), Expect = 1.731e-53 Identity = 67/111 (60.36%), Postives = 72/111 (64.86%), Query Frame = 3 Query: 1890 SKILDRVVSVEYALRDDSERGDRYHD-SPRRGGYGXXXXXXXXXXXXXDYGRPRSPVYDRRRSPDYGRPRSPDYG---------RPRSPDHVRPRSPDHVRPRSPEHGRYR 2192
SKILDRVVSVEYAL+DD ER DR SPRR SPVYRRR SPDYGR SP RR SPDYGR RSP+Y R RSPD+ R RS D+ R RSP + RYR
Sbjct: 150 SKILDRVVSVEYALKDDDERDDRNGGRSPRRS-----LSPVYRRRPSPDYGRRPSPGQGRRPSPDYGRARSPEYDRYKGPAAYERRRSPDYGR-RSSDYGRQRSPGYDRYR 254 HSP 4 Score: 67.0106 bits (162), Expect = 6.833e-11 Identity = 30/36 (83.33%), Postives = 35/36 (97.22%), Query Frame = 1 Query: 1 MRPVFVGNFEFDTRQSELERLFSKYGRVERVDIKSG 108
MRPVFVGNFE++TRQS+LERLF KYGRV+RVD+KSG
Sbjct: 1 MRPVFVGNFEYETRQSDLERLFDKYGRVDRVDMKSG 36
BLAST of rna-TanjilR_02521 vs. DB:Swiss
Match: RS31A_ARATH (Serine/arginine-rich splicing factor RS31A OS=Arabidopsis thaliana OX=3702 GN=RS31A PE=1 SV=1) HSP 1 Score: 120.553 bits (301), Expect = 2.521e-37 Identity = 58/75 (77.33%), Postives = 67/75 (89.33%), Query Frame = 2 Query: 1565 QGERGRHPNG-ARENQRPTRTLFVINFDPIRTRDRDIERHFEPYGKIHHVRIRRNFAFVQFETQEDATKALECTH 1786
QGERG+ +G A NQRPT+TLFVINFDPIRTR+RD+ERHFEPYGK+ +VR+RRNFAFVQF TQEDATKAL+ TH
Sbjct: 76 QGERGKPRDGKAVSNQRPTKTLFVINFDPIRTRERDMERHFEPYGKVLNVRMRRNFAFVQFATQEDATKALDSTH 150 HSP 2 Score: 58.9214 bits (141), Expect = 2.521e-37 Identity = 49/102 (48.04%), Postives = 59/102 (57.84%), Query Frame = 3 Query: 1890 SKILDRVVSVEYALRDDSERGDRYHDSPRRGGYGXXXXXXXXXXXXXDYGRPRSPVYDRRRSPDYGRPRSPDYGRPRSPD-HVRPRSPDHVRPRSPEHGRYR 2192
SK+LD+VVSVEYALR+ ER DRY S RR R SPVY RR SPDY R RSP+Y R + P + R +SPD+ R RS ++GR R
Sbjct: 152 SKLLDKVVSVEYALREAGEREDRYAGSRRR--------------------RSPSPVYRRRPSPDYTRRRSPEYDRYKGPAPYERRKSPDYGR-RSSDYGRAR 232 HSP 3 Score: 63.5438 bits (153), Expect = 9.493e-10 Identity = 29/39 (74.36%), Postives = 34/39 (87.18%), Query Frame = 1 Query: 1321 AGYAFVYYEDERDAEDAIRVLDNFPFGYEKRRLSVEWAR 1437
+GYAFVY+EDERDAEDAIR DN FGY +R+LSVEWA+
Sbjct: 35 SGYAFVYFEDERDAEDAIRRTDNTTFGYGRRKLSVEWAK 73 HSP 4 Score: 61.2326 bits (147), Expect = 5.435e-9 Identity = 27/36 (75.00%), Postives = 34/36 (94.44%), Query Frame = 1 Query: 1 MRPVFVGNFEFDTRQSELERLFSKYGRVERVDIKSG 108
MR V+VGNF++DTR S+LERLFSK+GRV+RVD+KSG
Sbjct: 1 MRHVYVGNFDYDTRHSDLERLFSKFGRVKRVDMKSG 36
BLAST of rna-TanjilR_02521 vs. DB:Swiss
Match: SRS41_ARATH (Serine/arginine-rich splicing factor RS41 OS=Arabidopsis thaliana OX=3702 GN=RS41 PE=1 SV=2) HSP 1 Score: 90.5077 bits (223), Expect = 1.665e-23 Identity = 41/61 (67.21%), Postives = 51/61 (83.61%), Query Frame = 2 Query: 1619 RTLFVINFDPIRTRDRDIERHFEPYGKIHHVRIRRNFAFVQFETQEDATKALECTHMRSVV 1801
+TLFVINFD TR RD+ERHFEPYGKI +VRIRRNFAF+Q+E QEDAT+AL+ T+ ++
Sbjct: 96 KTLFVINFDAQNTRTRDLERHFEPYGKIVNVRIRRNFAFIQYEAQEDATRALDATNSSKLM 156 HSP 2 Score: 42.3578 bits (98), Expect = 1.665e-23 Identity = 49/117 (41.88%), Postives = 60/117 (51.28%), Query Frame = 3 Query: 1890 SKILDRVVSVEYALRDDSERGDRYHDSPRRGGYGXXXXXXXXXXXXX----DYGRPRSPVYDRRR--SPDYGRP-RSPD-YGRPR-SPDHV-------RPRSPDH--VRPRSPEHGR 2186
SK++D+V+SVEYA++DD RG+ Y RR DYGR SPV +R SPDYGR RSP Y R R SPD+ R SP++ VR RSP GR
Sbjct: 153 SKLMDKVISVEYAVKDDDSRGNGYSPERRRDRSPDRRRRSPSPYRRERGSPDYGRGASPVAHKRERTSPDYGRGRRSPSPYKRARLSPDYKRDDRRRERVASPENGAVRNRSPRKGR 269 HSP 3 Score: 62.003 bits (149), Expect = 6.512e-9 Identity = 26/36 (72.22%), Postives = 33/36 (91.67%), Query Frame = 1 Query: 1 MRPVFVGNFEFDTRQSELERLFSKYGRVERVDIKSG 108
M+PVF GNFE+D R+S+LERLF KYG+VERVD+K+G
Sbjct: 1 MKPVFCGNFEYDARESDLERLFRKYGKVERVDMKAG 36 HSP 4 Score: 56.9954 bits (136), Expect = 2.604e-7 Identity = 27/39 (69.23%), Postives = 30/39 (76.92%), Query Frame = 1 Query: 1321 AGYAFVYYEDERDAEDAIRVLDNFPFGYEKRRLSVEWAR 1437
AG+AFVY EDERDAEDAIR LD F +G RRL VEW +
Sbjct: 35 AGFAFVYMEDERDAEDAIRALDRFEYGRTGRRLRVEWTK 73
BLAST of rna-TanjilR_02521 vs. DB:Swiss
Match: RS40_ARATH (Serine/arginine-rich splicing factor RS40 OS=Arabidopsis thaliana OX=3702 GN=RS40 PE=1 SV=2) HSP 1 Score: 93.9745 bits (232), Expect = 2.433e-19 Identity = 44/73 (60.27%), Postives = 56/73 (76.71%), Query Frame = 2 Query: 1610 RPTRTLFVINFDPIRTRDRDIERHFEPYGKIHHVRIRRNFAFVQFETQEDATKALECTH----MRSVVIFFYL 1816
RP++TLFVINFD TR RD+E+HFEPYGKI +VRIRRNFAF+Q+E QEDAT+AL+ ++ M V+ Y
Sbjct: 94 RPSKTLFVINFDADNTRTRDLEKHFEPYGKIVNVRIRRNFAFIQYEAQEDATRALDASNNSKLMDKVISVEYA 166 HSP 2 Score: 60.4622 bits (145), Expect = 2.081e-8 Identity = 25/36 (69.44%), Postives = 32/36 (88.89%), Query Frame = 1 Query: 1 MRPVFVGNFEFDTRQSELERLFSKYGRVERVDIKSG 108
M+PVF GNFE+D R+ +LERLF KYG+VERVD+K+G
Sbjct: 1 MKPVFCGNFEYDAREGDLERLFRKYGKVERVDMKAG 36 HSP 3 Score: 59.6918 bits (143), Expect = 4.170e-8 Identity = 28/39 (71.79%), Postives = 31/39 (79.49%), Query Frame = 1 Query: 1321 AGYAFVYYEDERDAEDAIRVLDNFPFGYEKRRLSVEWAR 1437
AG+AFVY EDERDAEDAIR LD F FG + RRL VEW +
Sbjct: 35 AGFAFVYMEDERDAEDAIRALDRFEFGRKGRRLRVEWTK 73 The following BLAST results are available for this feature:
BLAST of rna-TanjilR_02521 vs. DB:Swiss
Analysis Date: 2020-01-28 (BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot) Total hits: 4 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >rna-TanjilR_02521_La_Tanjil_v1.0 ID=rna-TanjilR_02521_La_Tanjil_v1.0; Name=rna-TanjilR_02521; organism=Lupinus angustifolius; type=mRNA; length=2201bpback to top protein sequence of rna-TanjilR_02521_La_Tanjil_v1.0 >rna-TanjilR_02521_La_Tanjil_v1.0 ID=rna-TanjilR_02521_La_Tanjil_v1.0; Name=rna-TanjilR_02521_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=250bpback to top mRNA from alignment at Chr_LG02-CM007362.1:3758648..3760848- Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below.>rna-TanjilR_02521_La_Tanjil_v1.0 ID=rna-TanjilR_02521_La_Tanjil_v1.0; Name=rna-TanjilR_02521; organism=Lupinus angustifolius; type=mRNA; length=2201bp; location=Sequence derived from: Chr_LG02-CM007362.1:3758648..3760848- (Lupinus angustifoliusback to top Coding sequence (CDS) from alignment at Chr_LG02-CM007362.1:3758648..3760848- >rna-TanjilR_02521_La_Tanjil_v1.0 ID=rna-TanjilR_02521_La_Tanjil_v1.0; Name=rna-TanjilR_02521; organism=Lupinus angustifolius; type=CDS; length=753bp; location=Sequence derived from: Chr_LG02-CM007362.1:3758648..3760848- (Lupinus angustifoliusback to top |