rna-TanjilR_02521

Transcript Overview
Namerna-TanjilR_02521
Unique Namerna-TanjilR_02521_La_Tanjil_v1.0
TypemRNA
OrganismLupinus angustifolius (blue lupin)
Sequence length2201
Producthypothetical protein
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr_LG02-CM007362.1supercontigChr_LG02-CM007362.1:3758648..3760848 -Lupinus angustifolius L. Tanjil genome v1.0n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Lupinus angustifolius L. Tanjil genome v1.02019-09-17
InterProScan: L. angustifolius cv. Tanjil genome v1.02020-01-28
BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot2020-01-28
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
ananL160Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ananR473Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaiR0745Cicer arietinum ICC 4958 genome v2Cicer arietinum
ancaiR0751Cicer arietinum ICC 4958 genome v2Cicer arietinum
ancaR0623Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ancaR0629Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
anccR0808Cajanus cajan Asha genome v1.0Cajanus cajan
ancaR0657Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ancaR0663Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ancrR0762Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
ancrR0765Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
anpsR0520Pisum sativum Cameor genome v1aPisum sativum
anpsR0525Pisum sativum Cameor genome v1aPisum sativum
anpvR0694Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
anpvR0718Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
anvuR0597Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
anvuR0624Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
anasR0678Vigna angularis Jingnong 6 genome v1.1Vigna angularis
anzwsR0601Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
anzwsR0606Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
antifR0632Vicia faba cv. Tiffany genome v1.0Vicia faba
anvfhR0631Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
antifR0639Vicia faba cv. Tiffany genome v1.0Vicia faba
anvfhR0639Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
anvuaR0594Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
anvssR0679Vicia sativa cv. Studenica genome v1.0Vicia sativa
anvssR0707Vicia sativa cv. Studenica genome v1.0Vicia sativa
ancanR0569Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
ancanR0606Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
ancanR0611Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
anavjR0646Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
anavjR0658Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
ancarR0609Cicer arietinum
ancarR0642Cicer arietinum
anccaR0600Cajanus cajan cv. Asha genome v2.0Cajanus cajan
anccaR0609Cajanus cajan cv. Asha genome v2.0Cajanus cajan
anvumR0672Vigna umbellata FF25 genome v1.0Vigna umbellata
anvumR0714Vigna umbellata FF25 genome v1.0Vigna umbellata
anvvaR0670Vicia villosa cv. AU Merit genome v1.0Vicia villosa
anvvaR0686Vicia villosa cv. AU Merit genome v1.0Vicia villosa
anvstR0710Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
anvasR0721Vigna angularis cv. Shumari genome v1.a1Vigna angularis
anvstR0724Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
anvasR0735Vigna angularis cv. Shumari genome v1.a1Vigna angularis
anvunR0597Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
anpvfR0724Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris

Orthologs
Gene/TranscriptAssemblySpecies
Psat4g163040.1Pisum sativum Cameor genome v1aPisum sativum
Cc_v2.0_08561.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
Va11G007950.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
Phvul.010G116100.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
Vigan.09G175800.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
Vfaba.Hedin2.R1.4g050840.2Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
jg15775.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Psat04G0550100-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
Vigun10g148400.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
rna-KK1_011246Cajanus cajan Asha genome v1.0Cajanus cajan
Ca_17620Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
Vfaba.Tiffany.R1.4g039600.2Vicia faba cv. Tiffany genome v1.0Vicia faba
Cc_v2.0_25719.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
XM_058887862.1Vicia villosa cv. AU Merit genome v1.0Vicia villosa
Vigst.09G099800.01Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
PvulFLAVERTChr10.1000884Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
Vum_09G01118.1Vigna umbellata FF25 genome v1.0Vigna umbellata
rna-XM_004510583.3Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
rna-TanjilR_18077Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
gene-TanjilG_02521gene-TanjilG_02521_La_Tanjil_v1.0Lupinus angustifoliusgene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_02521rna-TanjilR_02521_La_Tanjil_v1.0-proteinLupinus angustifoliuspolypeptide
rna-TanjilR_02521_La_Tanjil_v1.0rna-TanjilR_02521_La_Tanjil_v1.0Lupinus angustifoliuspolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_02521_La_Tanjil_v1.0-CDS-Chr_LG02-CM007362.1_La_Tanjil_v1.0-1579734366:3760743..3760848rna-TanjilR_02521_La_Tanjil_v1.0-CDS-Chr_LG02-CM007362.1_La_Tanjil_v1.0-1579734366:3760743..3760848Lupinus angustifoliusCDS
rna-TanjilR_02521_La_Tanjil_v1.0-CDS-Chr_LG02-CM007362.1_La_Tanjil_v1.0-1579734366:3759412..3759524rna-TanjilR_02521_La_Tanjil_v1.0-CDS-Chr_LG02-CM007362.1_La_Tanjil_v1.0-1579734366:3759412..3759524Lupinus angustifoliusCDS
rna-TanjilR_02521_La_Tanjil_v1.0-CDS-Chr_LG02-CM007362.1_La_Tanjil_v1.0-1579734366:3759058..3759281rna-TanjilR_02521_La_Tanjil_v1.0-CDS-Chr_LG02-CM007362.1_La_Tanjil_v1.0-1579734366:3759058..3759281Lupinus angustifoliusCDS
rna-TanjilR_02521_La_Tanjil_v1.0-CDS-Chr_LG02-CM007362.1_La_Tanjil_v1.0-1579734366:3758648..3758957rna-TanjilR_02521_La_Tanjil_v1.0-CDS-Chr_LG02-CM007362.1_La_Tanjil_v1.0-1579734366:3758648..3758957Lupinus angustifoliusCDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_02521_La_Tanjil_v1.0-exon-Chr_LG02-CM007362.1_La_Tanjil_v1.0-1579734366:3760743..3760848rna-TanjilR_02521_La_Tanjil_v1.0-exon-Chr_LG02-CM007362.1_La_Tanjil_v1.0-1579734366:3760743..3760848Lupinus angustifoliusexon
rna-TanjilR_02521_La_Tanjil_v1.0-exon-Chr_LG02-CM007362.1_La_Tanjil_v1.0-1579734366:3759412..3759524rna-TanjilR_02521_La_Tanjil_v1.0-exon-Chr_LG02-CM007362.1_La_Tanjil_v1.0-1579734366:3759412..3759524Lupinus angustifoliusexon
rna-TanjilR_02521_La_Tanjil_v1.0-exon-Chr_LG02-CM007362.1_La_Tanjil_v1.0-1579734366:3759058..3759281rna-TanjilR_02521_La_Tanjil_v1.0-exon-Chr_LG02-CM007362.1_La_Tanjil_v1.0-1579734366:3759058..3759281Lupinus angustifoliusexon
rna-TanjilR_02521_La_Tanjil_v1.0-exon-Chr_LG02-CM007362.1_La_Tanjil_v1.0-1579734366:3758648..3758957rna-TanjilR_02521_La_Tanjil_v1.0-exon-Chr_LG02-CM007362.1_La_Tanjil_v1.0-1579734366:3758648..3758957Lupinus angustifoliusexon


Homology
[Close]
BLAST of rna-TanjilR_02521 vs. DB:Swiss
Match: SRS31_ARATH (Serine/arginine-rich splicing factor RS31 OS=Arabidopsis thaliana OX=3702 GN=RS31 PE=1 SV=2)

HSP 1 Score: 114.775 bits (286), Expect = 1.731e-53
Identity = 58/88 (65.91%), Postives = 70/88 (79.55%), Query Frame = 2 
Query: 1547 LFVLF*QGERGRHPNG---ARENQRPTRTLFVINFDPIRTRDRDIERHFEPYGKIHHVRIRRNFAFVQFETQEDATKALECTHMRSVV 1801
            L V + +GERGR P G   A  N +PT+TLFVINFDPIRT++ DIE+HFEPYGK+ +VRIRRNF+FVQFETQEDATKALE T    ++
Sbjct:   67 LSVEWAKGERGR-PRGDAKAPSNLKPTKTLFVINFDPIRTKEHDIEKHFEPYGKVTNVRIRRNFSFVQFETQEDATKALEATQRSKIL 153

HSP 2 Score: 76.6406 bits (187), Expect = 1.731e-53
Identity = 35/39 (89.74%), Postives = 38/39 (97.44%), Query Frame = 1 
Query: 1321 AGYAFVYYEDERDAEDAIRVLDNFPFGYEKRRLSVEWAR 1437
            +GYAFVY+EDERDAEDAIR LDNFPFGYEKRRLSVEWA+
Sbjct:   35 SGYAFVYFEDERDAEDAIRKLDNFPFGYEKRRLSVEWAK 73

HSP 3 Score: 63.1586 bits (152), Expect = 1.731e-53
Identity = 67/111 (60.36%), Postives = 72/111 (64.86%), Query Frame = 3 
Query: 1890 SKILDRVVSVEYALRDDSERGDRYHD-SPRRGGYGXXXXXXXXXXXXXDYGRPRSPVYDRRRSPDYGRPRSPDYG---------RPRSPDHVRPRSPDHVRPRSPEHGRYR 2192
            SKILDRVVSVEYAL+DD ER DR    SPRR       SPVYRRR SPDYGR  SP   RR SPDYGR RSP+Y          R RSPD+ R RS D+ R RSP + RYR
Sbjct:  150 SKILDRVVSVEYALKDDDERDDRNGGRSPRRS-----LSPVYRRRPSPDYGRRPSPGQGRRPSPDYGRARSPEYDRYKGPAAYERRRSPDYGR-RSSDYGRQRSPGYDRYR 254

HSP 4 Score: 67.0106 bits (162), Expect = 6.833e-11
Identity = 30/36 (83.33%), Postives = 35/36 (97.22%), Query Frame = 1 
Query:    1 MRPVFVGNFEFDTRQSELERLFSKYGRVERVDIKSG 108
            MRPVFVGNFE++TRQS+LERLF KYGRV+RVD+KSG
Sbjct:    1 MRPVFVGNFEYETRQSDLERLFDKYGRVDRVDMKSG 36
[Close]
BLAST of rna-TanjilR_02521 vs. DB:Swiss
Match: RS31A_ARATH (Serine/arginine-rich splicing factor RS31A OS=Arabidopsis thaliana OX=3702 GN=RS31A PE=1 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 2.521e-37
Identity = 58/75 (77.33%), Postives = 67/75 (89.33%), Query Frame = 2 
Query: 1565 QGERGRHPNG-ARENQRPTRTLFVINFDPIRTRDRDIERHFEPYGKIHHVRIRRNFAFVQFETQEDATKALECTH 1786
            QGERG+  +G A  NQRPT+TLFVINFDPIRTR+RD+ERHFEPYGK+ +VR+RRNFAFVQF TQEDATKAL+ TH
Sbjct:   76 QGERGKPRDGKAVSNQRPTKTLFVINFDPIRTRERDMERHFEPYGKVLNVRMRRNFAFVQFATQEDATKALDSTH 150

HSP 2 Score: 58.9214 bits (141), Expect = 2.521e-37
Identity = 49/102 (48.04%), Postives = 59/102 (57.84%), Query Frame = 3 
Query: 1890 SKILDRVVSVEYALRDDSERGDRYHDSPRRGGYGXXXXXXXXXXXXXDYGRPRSPVYDRRRSPDYGRPRSPDYGRPRSPD-HVRPRSPDHVRPRSPEHGRYR 2192
            SK+LD+VVSVEYALR+  ER DRY  S RR                    R  SPVY RR SPDY R RSP+Y R + P  + R +SPD+ R RS ++GR R
Sbjct:  152 SKLLDKVVSVEYALREAGEREDRYAGSRRR--------------------RSPSPVYRRRPSPDYTRRRSPEYDRYKGPAPYERRKSPDYGR-RSSDYGRAR 232

HSP 3 Score: 63.5438 bits (153), Expect = 9.493e-10
Identity = 29/39 (74.36%), Postives = 34/39 (87.18%), Query Frame = 1 
Query: 1321 AGYAFVYYEDERDAEDAIRVLDNFPFGYEKRRLSVEWAR 1437
            +GYAFVY+EDERDAEDAIR  DN  FGY +R+LSVEWA+
Sbjct:   35 SGYAFVYFEDERDAEDAIRRTDNTTFGYGRRKLSVEWAK 73

HSP 4 Score: 61.2326 bits (147), Expect = 5.435e-9
Identity = 27/36 (75.00%), Postives = 34/36 (94.44%), Query Frame = 1 
Query:    1 MRPVFVGNFEFDTRQSELERLFSKYGRVERVDIKSG 108
            MR V+VGNF++DTR S+LERLFSK+GRV+RVD+KSG
Sbjct:    1 MRHVYVGNFDYDTRHSDLERLFSKFGRVKRVDMKSG 36
[Close]
BLAST of rna-TanjilR_02521 vs. DB:Swiss
Match: SRS41_ARATH (Serine/arginine-rich splicing factor RS41 OS=Arabidopsis thaliana OX=3702 GN=RS41 PE=1 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 1.665e-23
Identity = 41/61 (67.21%), Postives = 51/61 (83.61%), Query Frame = 2 
Query: 1619 RTLFVINFDPIRTRDRDIERHFEPYGKIHHVRIRRNFAFVQFETQEDATKALECTHMRSVV 1801
            +TLFVINFD   TR RD+ERHFEPYGKI +VRIRRNFAF+Q+E QEDAT+AL+ T+   ++
Sbjct:   96 KTLFVINFDAQNTRTRDLERHFEPYGKIVNVRIRRNFAFIQYEAQEDATRALDATNSSKLM 156

HSP 2 Score: 42.3578 bits (98), Expect = 1.665e-23
Identity = 49/117 (41.88%), Postives = 60/117 (51.28%), Query Frame = 3 
Query: 1890 SKILDRVVSVEYALRDDSERGDRYHDSPRRGGYGXXXXXXXXXXXXX----DYGRPRSPVYDRRR--SPDYGRP-RSPD-YGRPR-SPDHV-------RPRSPDH--VRPRSPEHGR 2186
            SK++D+V+SVEYA++DD  RG+ Y    RR                     DYGR  SPV  +R   SPDYGR  RSP  Y R R SPD+        R  SP++  VR RSP  GR
Sbjct:  153 SKLMDKVISVEYAVKDDDSRGNGYSPERRRDRSPDRRRRSPSPYRRERGSPDYGRGASPVAHKRERTSPDYGRGRRSPSPYKRARLSPDYKRDDRRRERVASPENGAVRNRSPRKGR 269

HSP 3 Score: 62.003 bits (149), Expect = 6.512e-9
Identity = 26/36 (72.22%), Postives = 33/36 (91.67%), Query Frame = 1 
Query:    1 MRPVFVGNFEFDTRQSELERLFSKYGRVERVDIKSG 108
            M+PVF GNFE+D R+S+LERLF KYG+VERVD+K+G
Sbjct:    1 MKPVFCGNFEYDARESDLERLFRKYGKVERVDMKAG 36

HSP 4 Score: 56.9954 bits (136), Expect = 2.604e-7
Identity = 27/39 (69.23%), Postives = 30/39 (76.92%), Query Frame = 1 
Query: 1321 AGYAFVYYEDERDAEDAIRVLDNFPFGYEKRRLSVEWAR 1437
            AG+AFVY EDERDAEDAIR LD F +G   RRL VEW +
Sbjct:   35 AGFAFVYMEDERDAEDAIRALDRFEYGRTGRRLRVEWTK 73
[Close]
BLAST of rna-TanjilR_02521 vs. DB:Swiss
Match: RS40_ARATH (Serine/arginine-rich splicing factor RS40 OS=Arabidopsis thaliana OX=3702 GN=RS40 PE=1 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 2.433e-19
Identity = 44/73 (60.27%), Postives = 56/73 (76.71%), Query Frame = 2 
Query: 1610 RPTRTLFVINFDPIRTRDRDIERHFEPYGKIHHVRIRRNFAFVQFETQEDATKALECTH----MRSVVIFFYL 1816
            RP++TLFVINFD   TR RD+E+HFEPYGKI +VRIRRNFAF+Q+E QEDAT+AL+ ++    M  V+   Y 
Sbjct:   94 RPSKTLFVINFDADNTRTRDLEKHFEPYGKIVNVRIRRNFAFIQYEAQEDATRALDASNNSKLMDKVISVEYA 166

HSP 2 Score: 60.4622 bits (145), Expect = 2.081e-8
Identity = 25/36 (69.44%), Postives = 32/36 (88.89%), Query Frame = 1 
Query:    1 MRPVFVGNFEFDTRQSELERLFSKYGRVERVDIKSG 108
            M+PVF GNFE+D R+ +LERLF KYG+VERVD+K+G
Sbjct:    1 MKPVFCGNFEYDAREGDLERLFRKYGKVERVDMKAG 36

HSP 3 Score: 59.6918 bits (143), Expect = 4.170e-8
Identity = 28/39 (71.79%), Postives = 31/39 (79.49%), Query Frame = 1 
Query: 1321 AGYAFVYYEDERDAEDAIRVLDNFPFGYEKRRLSVEWAR 1437
            AG+AFVY EDERDAEDAIR LD F FG + RRL VEW +
Sbjct:   35 AGFAFVYMEDERDAEDAIRALDRFEFGRKGRRLRVEWTK 73
The following BLAST results are available for this feature:
BLAST of rna-TanjilR_02521 vs. DB:Swiss
Analysis Date: 2020-01-28 (BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot)
Total hits: 4
Match NameE-valueIdentityDescription
SRS31_ARATH1.731e-5365.91Serine/arginine-rich splicing factor RS31 OS=Arabi... [more]
RS31A_ARATH2.521e-3777.33Serine/arginine-rich splicing factor RS31A OS=Arab... [more]
SRS41_ARATH1.665e-2367.21Serine/arginine-rich splicing factor RS41 OS=Arabi... [more]
RS40_ARATH2.433e-1960.27Serine/arginine-rich splicing factor RS40 OS=Arabi... [more]
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InterPro
Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 92..158
e-value: 2.5E-17
score: 73.5
coord: 3..70
e-value: 1.3E-15
score: 67.9
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 4..61
e-value: 5.8E-16
score: 58.1
coord: 93..155
e-value: 7.0E-13
score: 48.2
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 91..162
score: 15.528
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 2..74
score: 17.216
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 1..83
e-value: 3.1E-21
score: 77.4
coord: 84..174
e-value: 7.6E-21
score: 76.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 165..250
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 193..242
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 2..103
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 81..183

Sequences
The following sequences are available for this feature:

mRNA sequence

>rna-TanjilR_02521_La_Tanjil_v1.0 ID=rna-TanjilR_02521_La_Tanjil_v1.0; Name=rna-TanjilR_02521; organism=Lupinus angustifolius; type=mRNA; length=2201bp
ATGAGGCCAGTTTTCGTAGGGAACTTTGAATTTGATACCCGTCAATCTGA
GCTTGAACGTTTGTTCTCAAAGTATGGAAGGGTTGAACGTGTTGATATCA
AATCTGGTAACCCTAGCTTTTAATTTAATTTATTTTTTGTTTTGTAATTA
GGGTTTGTGAATGAATTATTTGGATGACATTTTATTTTATTTTGGGGCTT
TTTATATACTGATTAATCTCTTTTTAATTTGTAAATTTACTGTGTAATTG
AATAAAAACCTATATAAGTTTCAATTGCAAGATTTCGGAATAAAATTGAA
AGATAGTTAACTCTTATAGTAACCACCTTATAAGGTTCTATTTGGCGCAA
CTAGCTTATAAGATATGAGAAAGTTGTAATTTGATAAGCTAGCTGATTGA
GTCGAAACTATTTTATTAACGAGGTCATAGATGTAAAATGCCATAAGCCT
CTAGATTATAAGCCCATGAACTACCTCAAGGATCTTTTCAAATACAGAAT
TGTAAGTTCGTAGCTTATTGAAATAAGCCCCTTTACGAAAGACCAACTGT
GTGCTTATGTTTGGTCAAATATGCTAGTCTTGGCTAGTTTATAACCTACT
TTACGGTGTTACGAAACACACTATGTTACGTACACGTATGGTGATGTATA
AATAGGTTGATATTGTGACAAACTTTACAGTGGCGATATATCGAAACTGA
AGCTGTTCCTGTATCCTGGTCAAAAACAAATGGTTTCCAAAAAAATGCAA
TGTCTTTGGAGCAATCCTTCAGTTTTTGAGTGTTTGTTTTGACGCAGGAA
CTTGTATTATGCTTTGCCGAGCTTGTATCTTTGCTCTGCTTTCACTCACA
ATCACAGATTGCATCATCTCCATTTTCTCTCTCACTCACTCATCTCATTG
CTCCTGAATGTTCATAATGGGATCATCAATCAAATTAATAAGTCATGCCA
TTCCATCCCATGCCTTGCTACACTGAAGCAAAATATGGGATCTATGAATT
TTACCATGCAATGCTTATGCCTTCTATTACTGAAATCACTCCTGCTGTCT
GAATGAGGAGAAGCATGCTTTGCAATTCACAATCTCAGATCTCAATTTTG
GATTTAAATCCCTTTAATTTCAATCATCATTTTAGTTCCTCATTCAATCA
ATGCCTCTGCAGCTTCATCTGCATCACTCCTCCCATATATGCAGGTGTTG
TATTCTGTTGTTCTTGTTGACAGGGGAAATGATTTTCTGATTTGGATGCT
GTACTGCCAGTCAGGGATAAGATGTTGACTTCTGATCGCTATCTATGCTT
CTAATACCAGCTCTGGTGTTGCAGGTTATGCTTTTGTCTATTATGAGGAT
GAGCGAGATGCTGAAGATGCAATTCGTGTGCTTGACAATTTTCCATTTGG
TTATGAGAAGCGAAGGCTGTCTGTGGAGTGGGCTAGGGTATGATTGTGAT
AGTATTTTCATGACCATGTTCTAGTTGTATTTACATTTTATGATTGAGAT
CACATGTGTAAACAGGCATTACCTAAGATTAGTAATACAATGATCCTTAT
TTGTTTTATTTTAACAGGGTGAACGTGGCCGCCATCCTAATGGCGCAAGG
GAAAACCAGAGACCCACAAGAACCCTATTTGTTATCAATTTTGACCCAAT
TCGTACTAGAGATCGTGATATAGAAAGACACTTTGAACCTTATGGGAAGA
TTCATCATGTTCGAATTCGTCGGAATTTTGCTTTTGTGCAGTTCGAAACA
CAAGAAGATGCTACTAAAGCTCTTGAATGTACACATATGAGGTCAGTGGT
GATATTCTTCTATCTTCATAGAAATTTCTCAAGATTATTATTTTACTTAC
TGTGTACTAAAGATGAATTTATGATCCCATTGTGGTTTCAGTAAGATATT
GGACAGGGTGGTGTCTGTGGAGTATGCTCTAAGGGATGACAGTGAGAGGG
GTGACAGATATCATGACAGTCCTAGAAGAGGTGGTTATGGTAGATCACCC
AGTCCAGTTTATCGGAGGCGATCAAGTCCTGACTACGGTCGTCCACGCAG
CCCTGTGTATGACAGGCGTAGGAGCCCTGATTATGGTAGACCTAGGAGCC
CTGATTATGGCAGGCCTAGGAGCCCTGATCATGTCAGGCCTAGGAGCCCT
GATCATGTCAGGCCTAGGAGCCCTGAACATGGTAGATACCGCAGGTATTG
A
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protein sequence of rna-TanjilR_02521_La_Tanjil_v1.0

>rna-TanjilR_02521_La_Tanjil_v1.0 ID=rna-TanjilR_02521_La_Tanjil_v1.0; Name=rna-TanjilR_02521_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=250bp
MRPVFVGNFEFDTRQSELERLFSKYGRVERVDIKSGYAFVYYEDERDAED
AIRVLDNFPFGYEKRRLSVEWARGERGRHPNGARENQRPTRTLFVINFDP
IRTRDRDIERHFEPYGKIHHVRIRRNFAFVQFETQEDATKALECTHMSKI
LDRVVSVEYALRDDSERGDRYHDSPRRGGYGRSPSPVYRRRSSPDYGRPR
SPVYDRRRSPDYGRPRSPDYGRPRSPDHVRPRSPDHVRPRSPEHGRYRRY
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mRNA from alignment at Chr_LG02-CM007362.1:3758648..3760848-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna-TanjilR_02521_La_Tanjil_v1.0 ID=rna-TanjilR_02521_La_Tanjil_v1.0; Name=rna-TanjilR_02521; organism=Lupinus angustifolius; type=mRNA; length=2201bp; location=Sequence derived from: Chr_LG02-CM007362.1:3758648..3760848- (Lupinus angustifolius
ATGAGGCCAGTTTTCGTAGGGAACTTTGAATTTGATACCCGTCAATCTGA
GCTTGAACGTTTGTTCTCAAAGTATGGAAGGGTTGAACGTGTTGATATCA
AATCTGGTAACCCTAGCTTTTAATTTAATTTATTTTTTGTTTTGTAATTA
GGGTTTGTGAATGAATTATTTGGATGACATTTTATTTTATTTTGGGGCTT
TTTATATACTGATTAATCTCTTTTTAATTTGTAAATTTACTGTGTAATTG
AATAAAAACCTATATAAGTTTCAATTGCAAGATTTCGGAATAAAATTGAA
AGATAGTTAACTCTTATAGTAACCACCTTATAAGGTTCTATTTGGCGCAA
CTAGCTTATAAGATATGAGAAAGTTGTAATTTGATAAGCTAGCTGATTGA
GTCGAAACTATTTTATTAACGAGGTCATAGATGTAAAATGCCATAAGCCT
CTAGATTATAAGCCCATGAACTACCTCAAGGATCTTTTCAAATACAGAAT
TGTAAGTTCGTAGCTTATTGAAATAAGCCCCTTTACGAAAGACCAACTGT
GTGCTTATGTTTGGTCAAATATGCTAGTCTTGGCTAGTTTATAACCTACT
TTACGGTGTTACGAAACACACTATGTTACGTACACGTATGGTGATGTATA
AATAGGTTGATATTGTGACAAACTTTACAGTGGCGATATATCGAAACTGA
AGCTGTTCCTGTATCCTGGTCAAAAACAAATGGTTTCCAAAAAAATGCAA
TGTCTTTGGAGCAATCCTTCAGTTTTTGAGTGTTTGTTTTGACGCAGGAA
CTTGTATTATGCTTTGCCGAGCTTGTATCTTTGCTCTGCTTTCACTCACA
ATCACAGATTGCATCATCTCCATTTTCTCTCTCACTCACTCATCTCATTG
CTCCTGAATGTTCATAATGGGATCATCAATCAAATTAATAAGTCATGCCA
TTCCATCCCATGCCTTGCTACACTGAAGCAAAATATGGGATCTATGAATT
TTACCATGCAATGCTTATGCCTTCTATTACTGAAATCACTCCTGCTGTCT
GAATGAGGAGAAGCATGCTTTGCAATTCACAATCTCAGATCTCAATTTTG
GATTTAAATCCCTTTAATTTCAATCATCATTTTAGTTCCTCATTCAATCA
ATGCCTCTGCAGCTTCATCTGCATCACTCCTCCCATATATGCAGGTGTTG
TATTCTGTTGTTCTTGTTGACAGGGGAAATGATTTTCTGATTTGGATGCT
GTACTGCCAGTCAGGGATAAGATGTTGACTTCTGATCGCTATCTATGCTT
CTAATACCAGCTCTGGTGTTGCAGGTTATGCTTTTGTCTATTATGAGGAT
GAGCGAGATGCTGAAGATGCAATTCGTGTGCTTGACAATTTTCCATTTGG
TTATGAGAAGCGAAGGCTGTCTGTGGAGTGGGCTAGGGTATGATTGTGAT
AGTATTTTCATGACCATGTTCTAGTTGTATTTACATTTTATGATTGAGAT
CACATGTGTAAACAGGCATTACCTAAGATTAGTAATACAATGATCCTTAT
TTGTTTTATTTTAACAGGGTGAACGTGGCCGCCATCCTAATGGCGCAAGG
GAAAACCAGAGACCCACAAGAACCCTATTTGTTATCAATTTTGACCCAAT
TCGTACTAGAGATCGTGATATAGAAAGACACTTTGAACCTTATGGGAAGA
TTCATCATGTTCGAATTCGTCGGAATTTTGCTTTTGTGCAGTTCGAAACA
CAAGAAGATGCTACTAAAGCTCTTGAATGTACACATATGAGGTCAGTGGT
GATATTCTTCTATCTTCATAGAAATTTCTCAAGATTATTATTTTACTTAC
TGTGTACTAAAGATGAATTTATGATCCCATTGTGGTTTCAGTAAGATATT
GGACAGGGTGGTGTCTGTGGAGTATGCTCTAAGGGATGACAGTGAGAGGG
GTGACAGATATCATGACAGTCCTAGAAGAGGTGGTTATGGTAGATCACCC
AGTCCAGTTTATCGGAGGCGATCAAGTCCTGACTACGGTCGTCCACGCAG
CCCTGTGTATGACAGGCGTAGGAGCCCTGATTATGGTAGACCTAGGAGCC
CTGATTATGGCAGGCCTAGGAGCCCTGATCATGTCAGGCCTAGGAGCCCT
GATCATGTCAGGCCTAGGAGCCCTGAACATGGTAGATACCGCAGGTATTG
A
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Coding sequence (CDS) from alignment at Chr_LG02-CM007362.1:3758648..3760848-

>rna-TanjilR_02521_La_Tanjil_v1.0 ID=rna-TanjilR_02521_La_Tanjil_v1.0; Name=rna-TanjilR_02521; organism=Lupinus angustifolius; type=CDS; length=753bp; location=Sequence derived from: Chr_LG02-CM007362.1:3758648..3760848- (Lupinus angustifolius
ATGAGGCCAGTTTTCGTAGGGAACTTTGAATTTGATACCCGTCAATCTGA
GCTTGAACGTTTGTTCTCAAAGTATGGAAGGGTTGAACGTGTTGATATCA
AATCTGGTTATGCTTTTGTCTATTATGAGGATGAGCGAGATGCTGAAGAT
GCAATTCGTGTGCTTGACAATTTTCCATTTGGTTATGAGAAGCGAAGGCT
GTCTGTGGAGTGGGCTAGGGGTGAACGTGGCCGCCATCCTAATGGCGCAA
GGGAAAACCAGAGACCCACAAGAACCCTATTTGTTATCAATTTTGACCCA
ATTCGTACTAGAGATCGTGATATAGAAAGACACTTTGAACCTTATGGGAA
GATTCATCATGTTCGAATTCGTCGGAATTTTGCTTTTGTGCAGTTCGAAA
CACAAGAAGATGCTACTAAAGCTCTTGAATGTACACATATGAGTAAGATA
TTGGACAGGGTGGTGTCTGTGGAGTATGCTCTAAGGGATGACAGTGAGAG
GGGTGACAGATATCATGACAGTCCTAGAAGAGGTGGTTATGGTAGATCAC
CCAGTCCAGTTTATCGGAGGCGATCAAGTCCTGACTACGGTCGTCCACGC
AGCCCTGTGTATGACAGGCGTAGGAGCCCTGATTATGGTAGACCTAGGAG
CCCTGATTATGGCAGGCCTAGGAGCCCTGATCATGTCAGGCCTAGGAGCC
CTGATCATGTCAGGCCTAGGAGCCCTGAACATGGTAGATACCGCAGGTAT
TGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR035979RBD_domain_sf
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding