rna-TanjilR_19229
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Homology
BLAST of rna-TanjilR_19229 vs. DB:Swiss
Match: CRRS3_ARATH (Cysteine-rich repeat secretory protein 3 OS=Arabidopsis thaliana OX=3702 GN=CRRSP3 PE=1 SV=1) HSP 1 Score: 321.242 bits (822), Expect = 2.847e-109 Identity = 167/239 (69.87%), Postives = 207/239 (86.61%), Query Frame = 1 Query: 25 FLPFILILCTHLNPPHLT----ESASDYTTLVYKGCSKETFTDPNGQYSQALSALFGSLVAQSTKTKFYKVTTGSGQNSITGLFQCRGDLTNSDCYSCISRLPVLSDKLCGKTIAARVQLLGCYLLYEIAGFSQTSGMQMLYKTCGASNAAGRGFEERRDTAFXXXXXXXXXXXXFYTSSYQNVYVMGQCEGDVGDSDCGECVKSAVQRAQVECGSSISGQVFLQKCFISYSYYPNGVP 729 FL I+++C L P L + ++YTTL+YKGC+++ F+DP+G YSQALSA+FGSLV+QSTKT+FYK TTG+ +ITGLFQCRGDL+N DCY+C+SRLPVLSDKLCGKTIA+RVQL GCYLLYE++GFSQ SGM+ML+KTCG +N AG GFEERRDTAF V+ NGVVSGHGFY ++Y++VYV+GQCEGDVGD+DC CVK+A+++AQVECGSSISGQ++L KCFI+YSYYPNGVP Sbjct: 7 FLSIIMMMC--LLFPDLNVVVKSATTEYTTLIYKGCARQQFSDPSGLYSQALSAMFGSLVSQSTKTRFYKTTTGTSTTTITGLFQCRGDLSNHDCYNCVSRLPVLSDKLCGKTIASRVQLSGCYLLYEVSGFSQISGMEMLFKTCGKNNIAGTGFEERRDTAFGVMQNGVVSGHGFYATTYESVYVLGQCEGDVGDTDCSGCVKNALEKAQVECGSSISGQIYLHKCFIAYSYYPNGVP 243
BLAST of rna-TanjilR_19229 vs. DB:Swiss
Match: CRR11_ARATH (Cysteine-rich repeat secretory protein 11 OS=Arabidopsis thaliana OX=3702 GN=CRRSP11 PE=1 SV=2) HSP 1 Score: 310.842 bits (795), Expect = 2.795e-105 Identity = 158/245 (64.49%), Postives = 202/245 (82.45%), Query Frame = 1 Query: 1 MGF-TRKPIFLPFILILCTHLNPPHLTESASDYTTLVYKGCSKETFTDPNGQYSQALSALFGSLVAQSTKTKFYKVTTGSGQNSIT-GLFQCRGDLTNSDCYSCISRLPVLSDKLCGKTIAARVQLLGCYLLYEIAGFSQTSGMQMLYKTCGASNAAGRGFEERRDTAFXXXXXXXXXXXXFYTSSYQNVYVMGQCEGDVGDSDCGECVKSAVQRAQVECGSSISGQVFLQKCFISYSYYPNGVP 729 MGF + K + L +I+I+ + S+ +YT L+YKGC+++ +DP+G YSQALSA++G LV QSTKT+FYK TTG+ + GLFQCRGDL+N+DCY+C+SRLPVLS KLCGKTIAARVQL GCYLLYEI+GF+Q SGM++L+KTCG +N AG GFE+RRDTAF V+ NGVV GHGFY ++Y++VYV+GQCEGD+GDSDC C+K+A+QRAQVECGSSISGQ++L KCF+ YS+YPNGVP Sbjct: 1 MGFYSLKQLLLLYIIIMALFSDLKLAKSSSPEYTNLIYKGCARQRLSDPSGLYSQALSAMYGLLVTQSTKTRFYKTTTGTTSQTSVTGLFQCRGDLSNNDCYNCVSRLPVLSGKLCGKTIAARVQLSGCYLLYEISGFAQISGMELLFKTCGKNNVAGTGFEQRRDTAFGVMQNGVVQGHGFYATTYESVYVLGQCEGDIGDSDCSGCIKNALQRAQVECGSSISGQIYLHKCFVGYSFYPNGVP 245
BLAST of rna-TanjilR_19229 vs. DB:Swiss
Match: CRR56_ARATH (Cysteine-rich repeat secretory protein 56 OS=Arabidopsis thaliana OX=3702 GN=CRRSP56 PE=1 SV=2) HSP 1 Score: 207.608 bits (527), Expect = 1.031e-64 Identity = 114/229 (49.78%), Postives = 155/229 (67.69%), Query Frame = 1 Query: 88 SDYTTLVYKGCSKETFTDPNGQYSQALSALFGSLVAQSTKTKFYKVTTGSGQN-SITGLFQCRGDLTNSDCYSCISRLPVLSDKLCG------KTIAARVQLLGCYLLYEIAGFSQTSGMQMLYKTCGASNAAGRGFEERRDTAFXXXXXXXXXXXX--------FYTSSYQNVYVMGQCEGDVGDSDCGECVKSAVQRAQVECGSSISGQVFLQKCFISYSYYPNGVP 729 DY L++KGC+ + DP G +SQ L LF SLV+QS+++ F VT+G+ ++ G+FQCRGDL N+ CY C+S++P L KLCG +AARV L GCY+ YE +GF QTSG +ML++ CG ++ GF +R+TAF + NGV +G FY Y++VYV+GQCEG +G+SDCGECVK ++A+ ECG S SGQV+LQKCF+SYSYY +GVP Sbjct: 23 DDYKNLIFKGCANQKSPDPTGVFSQNLKNLFTSLVSQSSQSSFASVTSGTDNTTAVIGVFQCRGDLQNAQCYDCVSKIPKLVSKLCGGGRDDGNVVAARVHLAGCYIRYESSGFRQTSGTEMLFRVCGKKDSNDPGFVGKRETAFGMAENGVKTGSSGGGGGGGGFYAGQYESVYVLGQCEGSLGNSDCGECVKDGFEKAKSECGESNSGQVYLQKCFVSYSYYSHGVP 251
BLAST of rna-TanjilR_19229 vs. DB:Swiss
Match: CRR39_ARATH (Cysteine-rich repeat secretory protein 39 OS=Arabidopsis thaliana OX=3702 GN=CRRSP39 PE=1 SV=2) HSP 1 Score: 143.665 bits (361), Expect = 1.062e-39 Identity = 88/252 (34.92%), Postives = 134/252 (53.17%), Query Frame = 1 Query: 64 PPHLTESASDYTTLVYKGCS--------KETFTDPNGQ------YSQALSALFGSLVAQSTKTKFYKVTTGSGQNSITGLFQCRGDLTNSDCYSCISRLPVLSDKLCGKTIAARVQLLGCYLLYEIAGFS---------------QTSGMQMLYKTC-GASNAAGRGFEERRDTAFXXXXXXXXXXXXFYTSSYQNVYVMGQCEGDVGDSDCGECVKSAVQRAQVECGSSISGQVFLQKCFISYSYYPNGVP 729 P + S DY TLV+K C K T PN +QALS+ L ++S+++KF K G+ +++++G FQCR D + C+ C+ L +S + CG +AR+ L GC+L+Y+ +T +++K C GA+ GFEE R A + GVV GHGFY SY+ ++V+ QC+G V DCGEC+ SA A EC SI+GQ++L+ C + Y+Y+P+ +P Sbjct: 21 PSIINTSQLDYDTLVFKQCDPLDANILQKATTKSPNYSNQNLFLRAQALSSFLRKLESESSRSKFLKTLVGNEKHAVSGWFQCREDYPSEICHKCVGDLREISSRSCGNATSARIHLRGCHLIYKFERIDTPGAQVNNHHKYKLFETPEHGLIHKICDGATAETFPGFEEMRTEALTAAETGVVDGHGFYEDSYKLLHVVAQCDGHVEACDCGECISSAAAAAAEECRWSIAGQIYLEGCHVGYTYHPHELP 272
BLAST of rna-TanjilR_19229 vs. DB:Swiss
Match: CRR60_ARATH (Cysteine-rich repeat secretory protein 60 OS=Arabidopsis thaliana OX=3702 GN=CRRSP60 PE=1 SV=1) HSP 1 Score: 119.398 bits (298), Expect = 1.017e-30 Identity = 77/233 (33.05%), Postives = 118/233 (50.64%), Query Frame = 1 Query: 16 KPIFLPFILILCTHLNPPHLTESASDYTTLVYKGCSKETFTDPNGQYSQALSALFGSLVAQSTKTKF--YKVTTGSGQNSITGLFQCRGDLTNSDCYSCISRLPVLSDKLCGKTIAARVQLLGCYLLYEIAGFSQTSGMQMLYKTCGASNAAGRGFEERRDTAFXXXXXXXXXXXXFYTSSYQNVYVMGQCEGDVGDSDCGECVKSAVQRAQVECGSSISGQVFLQKCFISYS 708 K + + F LI T P L+ + S T V+ GCS++ F+ P Y L++L SLV +T + + + + S ++ GLFQCRGDL+ DC +C++R LC T +QL GCY+ Y+ F ++ K CG+S RRD V G F +V MGQC GD+ S+C +C+ +A+ R + +CG+++ G +FL KC+ YS Sbjct: 11 KTLSIFFFLIAAT---APSLSSATSATDTFVFGGCSQQKFS-PASAYESNLNSLLTSLVNSATYSSYNNFTIMGSSSSDTARGLFQCRGDLSMPDCATCVARAVSQVGPLCPFTCGGALQLAGCYIKYDNISFLGQEDKTVVLKKCGSSEGYNTDGISRRDAVL---TELVNGGGYFRAGGSGDVQGMGQCVGDLTVSECQDCLGTAIGRLKNDCGTAVFGDMFLAKCYARYS 236
BLAST of rna-TanjilR_19229 vs. DB:Swiss
Match: CRR15_ARATH (Cysteine-rich repeat secretory protein 15 OS=Arabidopsis thaliana OX=3702 GN=CRRSP15 PE=1 SV=1) HSP 1 Score: 90.1225 bits (222), Expect = 5.349e-20 Identity = 61/208 (29.33%), Postives = 95/208 (45.67%), Query Frame = 1 Query: 103 LVYKGCSKETFTDPNGQYSQALSALFGSLVAQSTKTKFYKVTTGSGQN------SITGLFQCRGDLTNSDCYSCISRLPVLSDKLCGKTIAARVQLLGCYLLYEIAGFSQTSGMQMLYKTCGASNAAGR-GFEERRDTAFXXXXXXXXXXXXFYTSSYQNVYVMGQCEGDVGDSDCGECVKSAVQRAQVECGSSISGQVFLQKCFISY 705 +Y GCS E +T PN + S+V S+ F G+ + ++ GL+QCR DL +SDC CI +C + A +QL GC+L YE F + YK C + + F +RRD + + G+ S V QC GD+ SDC C+ +V + + CGS+++ +V+L +C+ Y Sbjct: 29 FIYGGCSPEKYT-PNTPFESNRDTFLSSVVTSSSDASFNSFAVGNDSSSSSSSSAVFGLYQCRDDLRSSDCSKCIQTSVDQITLICPYSYGASLQLEGCFLRYETNDFLGKPDTSLRYKKCSSKSVENDYDFFKRRDDVL---SDLESTQLGYKVSRSGLVEGYAQCVGDLSPSDCTACLAESVGKLKNLCGSAVAAEVYLAQCYARY 232
BLAST of rna-TanjilR_19229 vs. DB:Swiss
Match: CRR12_ARATH (Cysteine-rich repeat secretory protein 12 OS=Arabidopsis thaliana OX=3702 GN=CRRSP12 PE=1 SV=2) HSP 1 Score: 90.1225 bits (222), Expect = 7.089e-20 Identity = 64/238 (26.89%), Postives = 111/238 (46.64%), Query Frame = 1 Query: 10 TRKPIFLPFILILCTHLNPPHLTESASDYTTLVYKGCSKETFTDPNGQYSQALSALFGSLVAQSTKTKFYKVTTG--SGQNS-ITGLFQCRGDLTNS--DCYSCISRLPVLSDKLCGKTIAARVQLLGCYLLYEIAGFSQTSGMQMLYKTCGASNAAGRGFEERRDTAFXXXXXXXXXXXXFYTSSYQNVYVMGQCEGDVGDSDCGECVKSAVQRAQVECGSSISGQVFLQKCFISYS 708 T+ +F+ + +L T S++ T +Y GCS+E + P Y +++L S V+ ++ + TT SG +S + GL+QCRGDL++ DC C++R LC +QL GC++ Y+ F ++ + CG RRD+ + + S + + QC GD+ ++C +C+ A+ R + +CG + G V+L KC+ YS Sbjct: 4 TKTVLFIAVVSLLGTF--------SSAAVDTFIYGGCSQEKYF-PGSPYESNVNSLLTSFVSSASLYTYNNFTTNGISGDSSSVYGLYQCRGDLSSGSGDCARCVARAVSRLGSLCAMASGGALQLEGCFVKYDNTTFLGVEDKTVVVRRCGPPVGYNSDEMTRRDSVVGSLAASSGGSYRVGVSG--ELQGVAQCTGDLSATECQDCLMEAIGRLRTDCGGAAWGDVYLAKCYARYS 230
BLAST of rna-TanjilR_19229 vs. DB:Swiss
Match: CRRS2_ARATH (Cysteine-rich repeat secretory protein 2 OS=Arabidopsis thaliana OX=3702 GN=CRRSP2 PE=1 SV=1) HSP 1 Score: 88.9669 bits (219), Expect = 1.869e-19 Identity = 64/237 (27.00%), Postives = 110/237 (46.41%), Query Frame = 1 Query: 10 TRKPIFLPFILILCTHLNPPHLTESASDYTTLVYKGCSKETFTDPNGQYSQALSALFGSLVAQSTKTKF--YKVTTGSGQNSIT--GLFQCRGDLTNSDCYSCISRLPVLSDKLCGKTIAARVQLLGCYLLYEIAGFSQTSGMQMLYKTCGASNAAGRGFEERRDTAFXXXXXXXXXXXXFYTSSYQNVYVMGQCEGDVGDSDCGECVKSAVQRAQVECGSSISGQVFLQKCFISYS 708 T+ L F+L +NP S+S +Y CS F+ P+ Y L++L S V + +T++ + V TG + ++T G++QCRGDL + C +C+S LC + + +Q+ C + Y+ F ++ CG ++ A V+G+ + T NV + QC GD+ S C +C+ A+ R + +CG + G V+L KC+ +S Sbjct: 4 TKTTSLLCFLLTAVILMNP----SSSSPTDNYIYAVCSPAKFS-PSSGYETNLNSLLSSFVTSTAQTRYANFTVPTGKPEPTVTVYGIYQCRGDLDPTACSTCVSSAVAQVGALCSNSYSGFLQMENCLIRYDNKSFLGVQDKTLILNKCGQPMEFND--QDALTKASDVIGSLGTGDGSYRTGGNGNVQGVAQCSGDLSTSQCQDCLSDAIGRLKSDCGMAQGGYVYLSKCYARFS 233
BLAST of rna-TanjilR_19229 vs. DB:Swiss
Match: CRR55_ARATH (Cysteine-rich repeat secretory protein 55 OS=Arabidopsis thaliana OX=3702 GN=CRRSP55 PE=2 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 3.896e-13 Identity = 55/218 (25.23%), Postives = 98/218 (44.95%), Query Frame = 1 Query: 106 VYKGCSKETFTDPNGQYSQALSALFGSLVAQSTKTKFYKVTTGSGQNS---ITGLFQCRGDLTNSDCYSCISRLPVLSDKLCGKTIAARVQLLGCYLLYEIAGF--SQTSGMQMLYKTCGA---------SNAAGRGFEERRDTAFXXXXXXXXXXXXFYTSSYQNVYVMGQCEGDVGDSDCGECVKSAVQRAQVECGSSISGQVFLQKCFISYSYYP 717 +++ C+ + + Q S+ + +L +LV++ T +K +K TT S N+ + GL QCRGD++N+DC +CI ++C +R+ C+L Y F +G ++Y N G F++ R A G+ G T + + + QC D+ + DC +C +AV C + +V C++ Y +YP Sbjct: 24 IWQLCNTNSNISASSQVSKNIDSLLATLVSK-TPSKGFKTTTSSSYNNKEKVYGLAQCRGDISNTDCSTCIQDAAKKIREVCQNQSDSRILYDFCFLRYSQENFIGKLDTGAGLIYFNVANVTEIDPKKFDNELGALFDKIRSEAVLPKNKGLGKGKTKLT-PFVTLNGLVQCTRDLSELDCAQCFATAVGSFMTTCHNKKGCRVLYSSCYVRYEFYP 239
BLAST of rna-TanjilR_19229 vs. DB:Swiss
Match: CRR58_ARATH (Cysteine-rich repeat secretory protein 58 OS=Arabidopsis thaliana OX=3702 GN=CRRSP58 PE=3 SV=1) HSP 1 Score: 66.6254 bits (161), Expect = 1.843e-11 Identity = 48/208 (23.08%), Postives = 88/208 (42.31%), Query Frame = 1 Query: 136 TDPNGQYSQALSALFGSLVAQSTKTKFYKVTTGSGQNSITGLFQCRGDLTNSDCYSCISRLPVLSDKLCGKTIAARVQLLGCYLLYEIAGFSQT---------SGMQMLYKTCGASNAAGRGFEERRDTAFXXXXXXXXXXXXFY---TSSYQNVYVMG---QCEGDVGDSDCGECVKSAVQRAQVECGSSISGQVFLQKCFISYSYY 714 T N Y++ L+ L +L QS+ +Y +TTG +++ G+F C GD+ + C +C+ + K C A + + C + Y F T S ++ K+ G G+ ++ S +Y T+ + N+Y + QC D+ +C C+K A+Q CG+ + ++ C +S+ Y Sbjct: 40 TTSNTTYNKNLNTLLSTLSNQSSFANYYNLTTGLASDTVHGMFLCTGDVNRTTCNACVKNATIEIAKNCTNHREAIIYNVDCMVRYSDKFFLTTLETNPSYWWSSNDLIPKSFG---KFGQRLSDKMGEVIVRSSLLSSSFTPYYLMDTTRFDNLYDLESIVQCTPDLDPRNCTTCLKLALQELTECCGNQVWAFIYTPNCMVSFDTY 244 The following BLAST results are available for this feature:
BLAST of rna-TanjilR_19229 vs. DB:Swiss
Analysis Date: 2020-01-28 (BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot) Total hits: 10
InterPro
Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28
Sequences
The
following sequences are available for this feature:
mRNA sequence >rna-TanjilR_19229_La_Tanjil_v1.0 ID=rna-TanjilR_19229_La_Tanjil_v1.0; Name=rna-TanjilR_19229; organism=Lupinus angustifolius; type=mRNA; length=810bpback to top protein sequence of rna-TanjilR_19229_La_Tanjil_v1.0 >rna-TanjilR_19229_La_Tanjil_v1.0 ID=rna-TanjilR_19229_La_Tanjil_v1.0; Name=rna-TanjilR_19229_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=269bpback to top mRNA from alignment at Chr_LG02-CM007362.1:11141980..11142789+ Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>rna-TanjilR_19229_La_Tanjil_v1.0 ID=rna-TanjilR_19229_La_Tanjil_v1.0; Name=rna-TanjilR_19229; organism=Lupinus angustifolius; type=mRNA; length=810bp; location=Sequence derived from: Chr_LG02-CM007362.1:11141980..11142789+ (Lupinus angustifoliusback to top Coding sequence (CDS) from alignment at Chr_LG02-CM007362.1:11141980..11142789+ >rna-TanjilR_19229_La_Tanjil_v1.0 ID=rna-TanjilR_19229_La_Tanjil_v1.0; Name=rna-TanjilR_19229; organism=Lupinus angustifolius; type=CDS; length=810bp; location=Sequence derived from: Chr_LG02-CM007362.1:11141980..11142789+ (Lupinus angustifoliusback to top |