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Transcript Overview
Name | rna-TanjilR_02803 |
Unique Name | rna-TanjilR_02803_La_Tanjil_v1.0 |
Type | mRNA |
Organism | Lupinus angustifolius (blue lupin) |
Sequence length | 1929 |
Product | hypothetical protein |
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks
Orthologs
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
Feature Name | Unique Name | Species | Type |
rna-TanjilR_02803 | rna-TanjilR_02803_La_Tanjil_v1.0-protein | Lupinus angustifolius | polypeptide |
rna-TanjilR_02803_La_Tanjil_v1.0 | rna-TanjilR_02803_La_Tanjil_v1.0 | Lupinus angustifolius | polypeptide |
The following exon feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type |
rna-TanjilR_02803_La_Tanjil_v1.0-exon-Chr_LG02-CM007362.1_La_Tanjil_v1.0-1579734366:20010962..20011585 | rna-TanjilR_02803_La_Tanjil_v1.0-exon-Chr_LG02-CM007362.1_La_Tanjil_v1.0-1579734366:20010962..20011585 | Lupinus angustifolius | exon |
rna-TanjilR_02803_La_Tanjil_v1.0-exon-Chr_LG02-CM007362.1_La_Tanjil_v1.0-1579734366:20012407..20012499 | rna-TanjilR_02803_La_Tanjil_v1.0-exon-Chr_LG02-CM007362.1_La_Tanjil_v1.0-1579734366:20012407..20012499 | Lupinus angustifolius | exon |
rna-TanjilR_02803_La_Tanjil_v1.0-exon-Chr_LG02-CM007362.1_La_Tanjil_v1.0-1579734366:20012604..20012671 | rna-TanjilR_02803_La_Tanjil_v1.0-exon-Chr_LG02-CM007362.1_La_Tanjil_v1.0-1579734366:20012604..20012671 | Lupinus angustifolius | exon |
rna-TanjilR_02803_La_Tanjil_v1.0-exon-Chr_LG02-CM007362.1_La_Tanjil_v1.0-1579734366:20012752..20012890 | rna-TanjilR_02803_La_Tanjil_v1.0-exon-Chr_LG02-CM007362.1_La_Tanjil_v1.0-1579734366:20012752..20012890 | Lupinus angustifolius | exon |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type |
rna-TanjilR_02803_La_Tanjil_v1.0-CDS-Chr_LG02-CM007362.1_La_Tanjil_v1.0-1579734366:20010962..20011585 | rna-TanjilR_02803_La_Tanjil_v1.0-CDS-Chr_LG02-CM007362.1_La_Tanjil_v1.0-1579734366:20010962..20011585 | Lupinus angustifolius | CDS |
rna-TanjilR_02803_La_Tanjil_v1.0-CDS-Chr_LG02-CM007362.1_La_Tanjil_v1.0-1579734366:20012407..20012499 | rna-TanjilR_02803_La_Tanjil_v1.0-CDS-Chr_LG02-CM007362.1_La_Tanjil_v1.0-1579734366:20012407..20012499 | Lupinus angustifolius | CDS |
rna-TanjilR_02803_La_Tanjil_v1.0-CDS-Chr_LG02-CM007362.1_La_Tanjil_v1.0-1579734366:20012604..20012671 | rna-TanjilR_02803_La_Tanjil_v1.0-CDS-Chr_LG02-CM007362.1_La_Tanjil_v1.0-1579734366:20012604..20012671 | Lupinus angustifolius | CDS |
rna-TanjilR_02803_La_Tanjil_v1.0-CDS-Chr_LG02-CM007362.1_La_Tanjil_v1.0-1579734366:20012752..20012890 | rna-TanjilR_02803_La_Tanjil_v1.0-CDS-Chr_LG02-CM007362.1_La_Tanjil_v1.0-1579734366:20012752..20012890 | Lupinus angustifolius | CDS |
Homology
BLAST of rna-TanjilR_02803 vs. DB:Swiss
Match: ABH51_CAEEL (Abhydrolase domain-containing protein abhd-5.1 OS=Caenorhabditis elegans OX=6239 GN=abhd-5.1 PE=3 SV=2) HSP 1 Score: 60.077 bits (144), Expect = 2.697e-8 Identity = 43/139 (30.94%), Postives = 68/139 (48.92%), Query Frame = 1
Query: 19 LTETRTRCYMSTFIGSGLRSAITDFKDGTV----MHCWVPKTRTESKPNLLLIHGLGANALWQWGDIIRNLTPLFNVYVPDLIFFGES----YTTRPERTEKFQAECVMRVLEANSVKKVSLVGLSYGGFVGYSMAEQY 411
L E R + + I FK+ + ++C + +SK ++LIHG GA + WG I+ L NVY DL FG S ++T PE EK E + + +++K++LVG S+GG++ S A +Y
Sbjct: 25 LAEAENRIFTALGIKFSSELVQIPFKNTEINTITVNCENESSELKSKYPIVLIHGFGA-GVALWGSAIKRLAQFQNVYAIDLPGFGRSSRTKFSTDPETAEKEMIEAIEQWRVKMNLEKMNLVGHSFGGYLSTSYALKY 162
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28
IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
IPR000073 | Alpha/beta hydrolase fold-1 | PRINTS | PR00111 | ABHYDROLASE | coord: 76..91 score: 33.19 coord: 241..255 score: 51.26 coord: 134..147 score: 25.86 coord: 120..133 score: 37.93 |
IPR000073 | Alpha/beta hydrolase fold-1 | PFAM | PF00561 | Abhydrolase_1 | coord: 50..152 e-value: 1.4E-12 score: 47.8 |
IPR029058 | Alpha/Beta hydrolase fold | GENE3D | 3.40.50.1820 | | coord: 33..305 e-value: 2.1E-45 score: 157.2 |
IPR029058 | Alpha/Beta hydrolase fold | SUPERFAMILY | 53474 | alpha/beta-Hydrolases | coord: 33..296 |
IPR013595 | Peptidase S33 tripeptidyl aminopeptidase-like, C-terminal | PFAM | PF08386 | Abhydrolase_4 | coord: 239..304 e-value: 1.0E-4 score: 22.4 |
Sequences
The
following sequences are available for this feature:
mRNA sequence >rna-TanjilR_02803_La_Tanjil_v1.0 ID=rna-TanjilR_02803_La_Tanjil_v1.0; Name=rna-TanjilR_02803; organism=Lupinus angustifolius; type=mRNA; length=1929bp ATGACCCAATGCTTCAGTTTAACCGAAACCAGAACCCGTTGCTACATGTC AACCTTCATCGGGTCGGGGCTCCGATCAGCCATAACAGACTTCAAAGACG GAACAGTGATGCATTGTTGGGTACCCAAGACCCGAACCGAGTCAAAACCG AACCTTCTCCTAATCCATGGTCTAGGAGCCAACGCTTTATGGCAATGGGG TGACATCATTCGCAACCTCACACCCTTGTTCAATGTCTACGTCCCAGACC TCATTTTCTTCGGTGAGTCCTACACGACCCGACCCGAACGAACCGAAAAG TTTCAAGCTGAGTGCGTGATGCGGGTATTGGAGGCTAATTCTGTAAAAAA AGTGAGCCTTGTGGGGCTGAGCTATGGTGGGTTTGTTGGGTACAGCATGG CGGAGCAGTATAGTGAGGTGGTGGAGAGGGTGGTGGTGTGTAGCTCAGGG GTGTGTATGGAAGAGAAGGATATTAAGGATGGGCTTTTCCCTGTTTCAGA TTTGGAAGAAGCTGTTAATATTTTGGTGCCACAAACGCCACAGAAGCTTA AGGAGCTTTTGGGGTATAGCTTTTTCAAACCTCCTAGATGGTTGCCATCT TGCTTTCTGTATGATTTCATCGAGGTAACAATTATTTTGCCTCTTAATTA CTGTTTGCTGTTAACCACTAATCATGTTATAAATCGTGTTAGTcacatta ttaattaattgatagCAAAGGGAAGTATGAGGCATAGGTTTATTGATATA AGTTTTGTTGGGAAGTAACTTCCCAACTGGCTGCTTCATTCTCATGGGTa aagtttaaatatttgttggcCACTTATTGTCAATTGGTTTCGAGATGAAA CTTTAAAACAGTATGAAAGCTATAGCACAACTTCTTTTCGCAGTTTAAGA GTGATAATTGTTGGGAGCGATAGCGAACTATCTGAAAATGAGTGGTTCCT TAGAGTTATTCCAAAAAACAATTGATAGCAAAGGCCACCACTTAACTTTT GGAGTATTTGAAGACCAATGAAAGAAGTTTATTAGCTAAAACTAAAATGG AAGCTAACATTTTAAAGACAAAAACATGATTAAGCAATTAGCTAGTTTAA TCTTGTTATGATCAATTCCACCCTAGTTCAGTTGTTAATTactttgtttg aatttaaaagAAAACTGACATTTTTACCTATTTTTGTGCAATTTTACAAG TGGTTGGCTGATAAAATCTAAGCATAATGGGTGTACATATATAGTATATT ACTGTAGTAGTGACACCATCCACAAGCATGATTATAggaggaaaaaatat aatgatggGGCAGTCATAGATCATAGAAGTGGAACTAGATGATGATGTTT CAGCAGTCATTTTTAACTAAGACATATAATATTATGGTGGATATTTGTAA ATGAAAAGGGATTTAGAGTGAGCTAAAGTTGGTGAATTTGGGTAGGCAAT GTGCATGGACTATATTGAAGATAAAAGAGAGTTGGTTCGAATCATTGCAA AGGGAAGAAAACTTTCTGACCTCCCAAAGATTTGTCAGGTTCATTTCAAT TTCCCTCTCAGTAGCATAGCCTATATTTGTATTTGAATTTTTCCCCATTG TAACAGCTTAAATAGATAGCTTCATTTAATCTTTGATTGCAGCCTACTCT AATTATCTGGGGAGAACATGATAGAGTATTCCCTTTAGAATTGGGTCACA GATTGAAAAGGTTAAGACCTAAAAACACTCTGATTGTACTAGTTACCATT ATATTTGAACTCAGAACTGATTGGATTGGTTGAAACACAGGCATTTGGGG GAGCAAGCTCAATTAGTTGTCATCAGTAATGCAGGGCATGCCTTCAGTTC GGAGAAGAGGAAGGAGTTCTACGAAAACTTGAAGTCGTTTCTCATGGATT TGAAGCCACCTGCAGAAAAGAGAACATaa back to topprotein sequence of rna-TanjilR_02803_La_Tanjil_v1.0 >rna-TanjilR_02803_La_Tanjil_v1.0 ID=rna-TanjilR_02803_La_Tanjil_v1.0; Name=rna-TanjilR_02803_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=307bp MTQCFSLTETRTRCYMSTFIGSGLRSAITDFKDGTVMHCWVPKTRTESKP NLLLIHGLGANALWQWGDIIRNLTPLFNVYVPDLIFFGESYTTRPERTEK FQAECVMRVLEANSVKKVSLVGLSYGGFVGYSMAEQYSEVVERVVVCSSG VCMEEKDIKDGLFPVSDLEEAVNILVPQTPQKLKELLGYSFFKPPRWLPS CFLYDFIEAMCMDYIEDKRELVRIIAKGRKLSDLPKICQPTLIIWGEHDR VFPLELGHRLKRHLGEQAQLVVISNAGHAFSSEKRKEFYENLKSFLMDLK PPAEKRT back to topmRNA from alignment at Chr_LG02-CM007362.1:20010962..20012890+ Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna-TanjilR_02803_La_Tanjil_v1.0 ID=rna-TanjilR_02803_La_Tanjil_v1.0; Name=rna-TanjilR_02803; organism=Lupinus angustifolius; type=mRNA; length=1929bp; location=Sequence derived from: Chr_LG02-CM007362.1:20010962..20012890+ (Lupinus angustifolius ATGACCCAATGCTTCAGTTTAACCGAAACCAGAACCCGTTGCTACATGTC
AACCTTCATCGGGTCGGGGCTCCGATCAGCCATAACAGACTTCAAAGACG
GAACAGTGATGCATTGTTGGGTACCCAAGACCCGAACCGAGTCAAAACCG
AACCTTCTCCTAATCCATGGTCTAGGAGCCAACGCTTTATGGCAATGGGG
TGACATCATTCGCAACCTCACACCCTTGTTCAATGTCTACGTCCCAGACC
TCATTTTCTTCGGTGAGTCCTACACGACCCGACCCGAACGAACCGAAAAG
TTTCAAGCTGAGTGCGTGATGCGGGTATTGGAGGCTAATTCTGTAAAAAA
AGTGAGCCTTGTGGGGCTGAGCTATGGTGGGTTTGTTGGGTACAGCATGG
CGGAGCAGTATAGTGAGGTGGTGGAGAGGGTGGTGGTGTGTAGCTCAGGG
GTGTGTATGGAAGAGAAGGATATTAAGGATGGGCTTTTCCCTGTTTCAGA
TTTGGAAGAAGCTGTTAATATTTTGGTGCCACAAACGCCACAGAAGCTTA
AGGAGCTTTTGGGGTATAGCTTTTTCAAACCTCCTAGATGGTTGCCATCT
TGCTTTCTGTATGATTTCATCGAGGTAACAATTATTTTGCCTCTTAATTA
CTGTTTGCTGTTAACCACTAATCATGTTATAAATCGTGTTAGTcacatta
ttaattaattgatagCAAAGGGAAGTATGAGGCATAGGTTTATTGATATA
AGTTTTGTTGGGAAGTAACTTCCCAACTGGCTGCTTCATTCTCATGGGTa
aagtttaaatatttgttggcCACTTATTGTCAATTGGTTTCGAGATGAAA
CTTTAAAACAGTATGAAAGCTATAGCACAACTTCTTTTCGCAGTTTAAGA
GTGATAATTGTTGGGAGCGATAGCGAACTATCTGAAAATGAGTGGTTCCT
TAGAGTTATTCCAAAAAACAATTGATAGCAAAGGCCACCACTTAACTTTT
GGAGTATTTGAAGACCAATGAAAGAAGTTTATTAGCTAAAACTAAAATGG
AAGCTAACATTTTAAAGACAAAAACATGATTAAGCAATTAGCTAGTTTAA
TCTTGTTATGATCAATTCCACCCTAGTTCAGTTGTTAATTactttgtttg
aatttaaaagAAAACTGACATTTTTACCTATTTTTGTGCAATTTTACAAG
TGGTTGGCTGATAAAATCTAAGCATAATGGGTGTACATATATAGTATATT
ACTGTAGTAGTGACACCATCCACAAGCATGATTATAggaggaaaaaatat
aatgatggGGCAGTCATAGATCATAGAAGTGGAACTAGATGATGATGTTT
CAGCAGTCATTTTTAACTAAGACATATAATATTATGGTGGATATTTGTAA
ATGAAAAGGGATTTAGAGTGAGCTAAAGTTGGTGAATTTGGGTAGGCAAT
GTGCATGGACTATATTGAAGATAAAAGAGAGTTGGTTCGAATCATTGCAA
AGGGAAGAAAACTTTCTGACCTCCCAAAGATTTGTCAGGTTCATTTCAAT
TTCCCTCTCAGTAGCATAGCCTATATTTGTATTTGAATTTTTCCCCATTG
TAACAGCTTAAATAGATAGCTTCATTTAATCTTTGATTGCAGCCTACTCT
AATTATCTGGGGAGAACATGATAGAGTATTCCCTTTAGAATTGGGTCACA
GATTGAAAAGGTTAAGACCTAAAAACACTCTGATTGTACTAGTTACCATT
ATATTTGAACTCAGAACTGATTGGATTGGTTGAAACACAGGCATTTGGGG
GAGCAAGCTCAATTAGTTGTCATCAGTAATGCAGGGCATGCCTTCAGTTC
GGAGAAGAGGAAGGAGTTCTACGAAAACTTGAAGTCGTTTCTCATGGATT
TGAAGCCACCTGCAGAAAAGAGAACATaa back to topCoding sequence (CDS) from alignment at Chr_LG02-CM007362.1:20010962..20012890+ >rna-TanjilR_02803_La_Tanjil_v1.0 ID=rna-TanjilR_02803_La_Tanjil_v1.0; Name=rna-TanjilR_02803; organism=Lupinus angustifolius; type=CDS; length=924bp; location=Sequence derived from: Chr_LG02-CM007362.1:20010962..20012890+ (Lupinus angustifolius ATGACCCAATGCTTCAGTTTAACCGAAACCAGAACCCGTTGCTACATGTC AACCTTCATCGGGTCGGGGCTCCGATCAGCCATAACAGACTTCAAAGACG GAACAGTGATGCATTGTTGGGTACCCAAGACCCGAACCGAGTCAAAACCG AACCTTCTCCTAATCCATGGTCTAGGAGCCAACGCTTTATGGCAATGGGG TGACATCATTCGCAACCTCACACCCTTGTTCAATGTCTACGTCCCAGACC TCATTTTCTTCGGTGAGTCCTACACGACCCGACCCGAACGAACCGAAAAG TTTCAAGCTGAGTGCGTGATGCGGGTATTGGAGGCTAATTCTGTAAAAAA AGTGAGCCTTGTGGGGCTGAGCTATGGTGGGTTTGTTGGGTACAGCATGG CGGAGCAGTATAGTGAGGTGGTGGAGAGGGTGGTGGTGTGTAGCTCAGGG GTGTGTATGGAAGAGAAGGATATTAAGGATGGGCTTTTCCCTGTTTCAGA TTTGGAAGAAGCTGTTAATATTTTGGTGCCACAAACGCCACAGAAGCTTA AGGAGCTTTTGGGGTATAGCTTTTTCAAACCTCCTAGATGGTTGCCATCT TGCTTTCTGTATGATTTCATCGAGGCAATGTGCATGGACTATATTGAAGA TAAAAGAGAGTTGGTTCGAATCATTGCAAAGGGAAGAAAACTTTCTGACC TCCCAAAGATTTGTCAGCCTACTCTAATTATCTGGGGAGAACATGATAGA GTATTCCCTTTAGAATTGGGTCACAGATTGAAAAGGCATTTGGGGGAGCA AGCTCAATTAGTTGTCATCAGTAATGCAGGGCATGCCTTCAGTTCGGAGA AGAGGAAGGAGTTCTACGAAAACTTGAAGTCGTTTCTCATGGATTTGAAG CCACCTGCAGAAAAGAGAACATaa back to top
Annotated Terms
The
following terms have been associated with
this mRNA:
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