rna-TanjilR_17738
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Homology
BLAST of rna-TanjilR_17738 vs. DB:Swiss
Match: AHL17_ARATH (AT-hook motif nuclear-localized protein 17 OS=Arabidopsis thaliana OX=3702 GN=AHL17 PE=2 SV=1) HSP 1 Score: 228.409 bits (581), Expect = 3.131e-73 Identity = 129/233 (55.36%), Postives = 171/233 (73.39%), Query Frame = 1 Query: 133 DGGTIEAVPKLRGRPPGSKNKPKPPVMLTQEPEPVMSPYILEVPAGSDVVEALKRFSVRKNKGLCILSGKGTVANVTLRQPXXXXXXXXXXXXXXFYGRFDILSISATIFP-----NSSIPIPDGFSISVAGPQGQVVGGFVAGSLIAAGTVFLIALSFNNMSYHRLPSEVDVRNNNSVSGDGVVQSLPVSGGGGAENGHVQGE-------SMYSGNL-PSDVIWAPTAMPPP 792 D +IE V + RGRPPGSKNKPKPPV +T++ +P MSPYILEVP+G+DVVEA+ RF RK+ G+C+LSG G+VANVTLRQP S + +TF+G+FD+LS+SAT P + S P+ + F++S+AGPQGQ++GGFVAG LI+AGTV++IA SFNN SYHRLP+E + + +++ +G+ QS PVS GGG E+G + G SMYS ++ SDVIWAPTA PP Sbjct: 48 DDSSIEVVRRPRGRPPGSKNKPKPPVFVTRDTDPPMSPYILEVPSGNDVVEAINRFCRRKSIGVCVLSGSGSVANVTLRQP----SPAALGSTITFHGKFDLLSVSATFLPPPPRTSLSPPVSNFFTVSLAGPQGQIIGGFVAGPLISAGTVYVIAASFNNPSYHRLPAE-EEQKHSAGTGEREGQSPPVS-GGGEESGQMAGSGGESCGVSMYSCHMGGSDVIWAPTARAPP 274
BLAST of rna-TanjilR_17738 vs. DB:Swiss
Match: AHL28_ARATH (AT-hook motif nuclear-localized protein 28 OS=Arabidopsis thaliana OX=3702 GN=AHL28 PE=2 SV=1) HSP 1 Score: 191.43 bits (485), Expect = 8.646e-60 Identity = 118/220 (53.64%), Postives = 146/220 (66.36%), Query Frame = 1 Query: 145 IEAVPKLRGRPPGSKNKPKPPVMLTQEPEPVMSPYILEVPAGSDVVEALKRFSVRKNKGLCILSGKGTVANVTLRQPXXXXXXXXXXXXXXFYGRFDILSISATIFPNSSIP-----IPDGFSISVAGPQGQVVGGFVAGSLIAAGTVFLIALSFNNMSYHRLPSEVDVRNNNSVSGDGVVQSLPVSGGGGAENGHVQGESMYSGNLPSDVIWAPTAMPP 789 +E V + RGRP GSKNKPK P+ +T +P MSPYILEVP+G+DVVEAL RF K G C+LSG G+VA+VTLRQPS A +T T F+G+FD+LS+SAT P + + F++S+AGPQG+V+GGFVAG L+AAGTV+ +A SF N SYHRLP+ + NS G+ QS PVSGGG GESMY G SDVIW P A P Sbjct: 1 METVGRPRGRPRGSKNKPKAPIFVTIDPP--MSPYILEVPSGNDVVEALNRFCRGKAIGFCVLSGSGSVADVTLRQPSPAAPGSTIT----FHGKFDLLSVSATFLPPLPPTSLSPPVSNFFTVSLAGPQGKVIGGFVAGPLVAAGTVYFVATSFKNPSYHRLPA-TEEEQRNSAEGEEEGQSPPVSGGG--------GESMYVGG--SDVIWDPNAKAP 203
BLAST of rna-TanjilR_17738 vs. DB:Swiss
Match: AHL29_ARATH (AT-hook motif nuclear-localized protein 29 OS=Arabidopsis thaliana OX=3702 GN=AHL29 PE=1 SV=1) HSP 1 Score: 142.51 bits (358), Expect = 1.424e-39 Identity = 82/189 (43.39%), Postives = 123/189 (65.08%), Query Frame = 1 Query: 70 QTSEEGDSSGGPTQKPASSSGDGGTIEAVPKLRGRPPGSKNKPKPPVMLTQEPEPVMSPYILEVPAGSDVVEALKRFSVRKNKGLCILSGKGTVANVTLRQPXXXXXXXXXXXX---XXFYGRFDILSISATIFPNSSIPIPDGFSISVAGPQGQVVGGFVAGSLIAAGTVFLIALSFNNMSYHRLPSE 627 + +E DS+ P P +S G + RGRPPGSKNKPKPPV++T++ V+ ++LEV +G+D+VE++ ++ R+ +G+ ILSG GTVANV+LRQP++ A+ V +GRF+ILS++ T+ P + P G SI ++G QGQV+GG V L+A+G V L+A SF+N ++ RLP E Sbjct: 49 NSDDESDSNKDPGSDPVTSGSTG------KRPRGRPPGSKNKPKPPVIVTRDSPNVLRSHVLEVSSGADIVESVTTYARRRGRGVSILSGNGTVANVSLRQPATTAAHGANGGTGGVVALHGRFEILSLTGTVLPPPAPPGSGGLSIFLSGVQGQVIGGNVVAPLVASGPVILMAASFSNATFERLPLE 231
BLAST of rna-TanjilR_17738 vs. DB:Swiss
Match: AHL19_ARATH (AT-hook motif nuclear-localized protein 19 OS=Arabidopsis thaliana OX=3702 GN=AHL19 PE=2 SV=1) HSP 1 Score: 125.176 bits (313), Expect = 8.173e-33 Identity = 81/164 (49.39%), Postives = 113/164 (68.90%), Query Frame = 1 Query: 139 GTIEA-VPKLRGRPPGSKNKPKPPVMLTQEPEPVMSPYILEVPAGSDVVEALKRFSVRKNKGLCILSGKGTVANVTLRQPXX--XXXXXXXXXXXXFYGRFDILSISATIFPNSSIPIPDGFSISVAGPQGQVVGGFVAGSLIAAGTVFLIALSFNNMSYHRLP 621 G +EA + RGRP GSKNKPKPP+ +T++ + +++E+ +G+DV+E L F+ R+ +G+CILSG GTVANVTLRQPS+ VA+A + GRF+ILS++ + P + P G +I +AG QGQVVGG V G L+AAG V LIA +F+N +Y RLP Sbjct: 73 GAVEAPTRRPRGRPAGSKNKPKPPIFVTRDSPNALKSHVMEIASGTDVIETLATFARRRQRGICILSGNGTVANVTLRQPSTAAVAAAPGGAAVLALQGRFEILSLTGSFLPGPAPPGSTGLTIYLAGGQGQVVGGSVVGPLMAAGPVMLIAATFSNATYERLP 236
BLAST of rna-TanjilR_17738 vs. DB:Swiss
Match: AHL20_ARATH (AT-hook motif nuclear-localized protein 20 OS=Arabidopsis thaliana OX=3702 GN=AHL20 PE=2 SV=1) HSP 1 Score: 119.398 bits (298), Expect = 5.401e-31 Identity = 76/164 (46.34%), Postives = 106/164 (64.63%), Query Frame = 1 Query: 139 GTIEAVPKL-RGRPPGSKNKPKPPVMLTQEPEPVMSPYILEVPAGSDVVEALKRFSVRKNKGLCILSGKGTVANVTLRQPXXXXXXXXXXXXXXFYGRFDILSISATIFPNSSIPIPDGFSISVAGPQGQVVGGFVAGSLIAAGTVFLIALSFNNMSYHRLPSE 627 G +E V + RGRPPGSKNKPK P+ +T++ + ++LE+ GSDV + + FS R+ +G+C+LSG G+VANVTLRQ A V+ GRF+ILS++ P S P G ++ +AG QGQVVGG V G L+A G+V +IA +F+N +Y RLP E Sbjct: 60 GAVEVVNRRPRGRPPGSKNKPKAPIFVTRDSPNALRSHVLEISDGSDVADTIAHFSRRRQRGVCVLSGTGSVANVTLRQ------AAAPGGVVSLQGRFEILSLTGAFLPGPSPPGSTGLTVYLAGVQGQVVGGSVVGPLLAIGSVMVIAATFSNATYERLPME 217
BLAST of rna-TanjilR_17738 vs. DB:Swiss
Match: AHL18_ARATH (AT-hook motif nuclear-localized protein 18 OS=Arabidopsis thaliana OX=3702 GN=AHL18 PE=2 SV=1) HSP 1 Score: 119.013 bits (297), Expect = 6.022e-31 Identity = 62/148 (41.89%), Postives = 92/148 (62.16%), Query Frame = 1 Query: 166 RGRPPGSKNKPKPPVMLTQEPEPVMSPYILEVPAGSDVVEALKRFSVRKNKGLCILSGKGTVANVTLRQPXXXXXXXXXXXXXXFYGRFDILSISATIFPNSSIPIPDGFSISVAGPQGQVVGGFVAGSLIAAGTVFLIALSFNNMSY 609 RGRP GSKNKPK P+++T++ +++E+ DV+E+L F+ R+ +G+C+L+G G V NVT+RQP V+ +GRF+ILS+S + P + P G + +AG QGQV+GG V G L A+ V ++A SF N SY Sbjct: 62 RGRPAGSKNKPKAPIIVTRDSANAFRCHVMEITNACDVMESLAVFARRRQRGVCVLTGNGAVTNVTVRQP--------GGGVVSLHGRFEILSLSGSFLPPPAPPAASGLKVYLAGGQGQVIGGSVVGPLTASSPVVVMAASFGNASY 201
BLAST of rna-TanjilR_17738 vs. DB:Swiss
Match: AHL21_ARATH (AT-hook motif nuclear-localized protein 21 OS=Arabidopsis thaliana OX=3702 GN=AHL21 PE=2 SV=1) HSP 1 Score: 119.013 bits (297), Expect = 7.987e-31 Identity = 74/152 (48.68%), Postives = 100/152 (65.79%), Query Frame = 1 Query: 166 RGRPPGSKNKPKPPVMLTQEPEPVMSPYILEVPAGSDVVEALKRFSVRKNKGLCILSGKGTVANVTLRQPXXXXXXXXXXXXXXFYGRFDILSISATIFPNSSIPIPDGFSISVAGPQGQVVGGFVAGSLIAAGTVFLIALSFNNMSYHRLP 621 RGRP GSKNKPKPPV++T+E + +ILEV +G DV E + ++ R+ +G+C+LSG GTV NV++RQP T VT G F+ILS+S + P + P +I +AG QGQVVGG V G L+AAG V ++A SF N++Y RLP Sbjct: 81 RGRPAGSKNKPKPPVIVTRESANTLRAHILEVGSGCDVFECISTYARRRQRGICVLSGTGTVTNVSIRQP------TAAGAVVTLRGTFEILSLSGSFLPPPAPPGATSLTIFLAGAQGQVVGGNVVGELMAAGPVMVMAASFTNVAYERLP 226
BLAST of rna-TanjilR_17738 vs. DB:Swiss
Match: AHL16_ARATH (AT-hook motif nuclear-localized protein 16 OS=Arabidopsis thaliana OX=3702 GN=AHL16 PE=1 SV=1) HSP 1 Score: 115.546 bits (288), Expect = 1.058e-29 Identity = 77/165 (46.67%), Postives = 102/165 (61.82%), Query Frame = 1 Query: 148 EAVPKLRGRPPGSKNKPKPPVMLTQEPEPVMSPYILEVPAGSDVVEALKRFSVRKNKGLCILSGKGTVANVTLRQPXXXXXXXXXXXXXXFYGRFDILSISATIFPNSSIPIP---DGFSISVAGPQGQVVGGFVAGSLIAAGTVFLIALSFNNMSYHRLPSEVD 633 E + RGRP GSKNKPKPP+++T + + +E+ +G D+ E L F+ RK +GLCILS G V NVTLRQP ++ VT +GR++ILS+ +I P P P G +I +AGPQGQVVGG V G LIA+G V L+A SF N + RLP + D Sbjct: 50 EMAKRPRGRPAGSKNKPKPPIIVTHDSPNSLRANAVEISSGCDICETLSDFARRKQRGLCILSANGCVTNVTLRQP------ASSGAIVTLHGRYEILSLLGSILPP---PAPLGITGLTIYLAGPQGQVVGGGVVGGLIASGPVVLMAASFMNAVFDRLPMDDD 205
BLAST of rna-TanjilR_17738 vs. DB:Swiss
Match: AHL25_ARATH (AT-hook motif nuclear-localized protein 25 OS=Arabidopsis thaliana OX=3702 GN=AHL25 PE=1 SV=1) HSP 1 Score: 115.546 bits (288), Expect = 2.277e-29 Identity = 76/151 (50.33%), Postives = 103/151 (68.21%), Query Frame = 1 Query: 166 RGRPPGSKNKPKPPVMLTQEPEPVMSPYILEVPAGSDVVEALKRFSVRKNKGLCILSGKGTVANVTLRQPXXXXXXXXXXXXXXFYGRFDILSISATIFPNSSIPIPDGFSISVAGPQGQVVGGFVAGSLIAAGTVFLIALSFNNMSYHRL 618 RGRP GSKNKPKPP ++T++ V+ ++LEV +GSD+ EA+ ++ R+ G+CI+SG G V NVT+RQP +A +T +GRFDILS++ T P + P G ++ +AG QGQVVGG VAGSLIA+G V L+A SF N Y RL Sbjct: 66 RGRPAGSKNKPKPPTIITRDSPNVLRSHVLEVTSGSDISEAVSTYATRRGCGVCIISGTGAVTNVTIRQP----AAPAGGGVITLHGRFDILSLTGTALPPPAPPGAGGLTVYLAGGQGQVVGGNVAGSLIASGPVVLMAASFANAVYDRL 212
BLAST of rna-TanjilR_17738 vs. DB:Swiss
Match: AHL22_ARATH (AT-hook motif nuclear-localized protein 22 OS=Arabidopsis thaliana OX=3702 GN=AHL22 PE=1 SV=1) HSP 1 Score: 115.161 bits (287), Expect = 4.836e-29 Identity = 72/156 (46.15%), Postives = 105/156 (67.31%), Query Frame = 1 Query: 166 RGRPPGSKNKPKPPVMLTQEPEPVMSPYILEVPAGSDVVEALKRFSVRKNKGLCILSGKGTVANVTLRQPXXXXXXXXXXXXXXFYGRFDILSISATIFPNSSIPIPDGFSISVAGPQGQVVGGFVAGSLIAAGTVFLIALSFNNMSYHRLPSEVD 633 RGRP GSKNKPKPP+++T++ + +++EV G DV+E++ F+ R+ +G+C+LSG G V NVT+RQP + ++ V +GRF+ILS+S + P + P G +I +AG QGQVVGG V G L+A+G V ++A SF N +Y RLP E D Sbjct: 92 RGRPAGSKNKPKPPIIITRDSANALKSHVMEVANGCDVMESVTVFARRRQRGICVLSGNGAVTNVTIRQP--ASVPGGGSSVVNLHGRFEILSLSGSFLPPPAPPAASGLTIYLAGGQGQVVGGSVVGPLMASGPVVIMAASFGNAAYERLPLEED 245 The following BLAST results are available for this feature:
BLAST of rna-TanjilR_17738 vs. DB:Swiss
Analysis Date: 2020-01-28 (BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot) Total hits: 10
InterPro
Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28
Sequences
The
following sequences are available for this feature:
mRNA sequence >rna-TanjilR_17738_La_Tanjil_v1.0 ID=rna-TanjilR_17738_La_Tanjil_v1.0; Name=rna-TanjilR_17738; organism=Lupinus angustifolius; type=mRNA; length=798bpback to top protein sequence of rna-TanjilR_17738_La_Tanjil_v1.0 >rna-TanjilR_17738_La_Tanjil_v1.0 ID=rna-TanjilR_17738_La_Tanjil_v1.0; Name=rna-TanjilR_17738_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=265bpback to top mRNA from alignment at Chr_LG02-CM007362.1:20464981..20465778- Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below.>rna-TanjilR_17738_La_Tanjil_v1.0 ID=rna-TanjilR_17738_La_Tanjil_v1.0; Name=rna-TanjilR_17738; organism=Lupinus angustifolius; type=mRNA; length=798bp; location=Sequence derived from: Chr_LG02-CM007362.1:20464981..20465778- (Lupinus angustifoliusback to top Coding sequence (CDS) from alignment at Chr_LG02-CM007362.1:20464981..20465778- >rna-TanjilR_17738_La_Tanjil_v1.0 ID=rna-TanjilR_17738_La_Tanjil_v1.0; Name=rna-TanjilR_17738; organism=Lupinus angustifolius; type=CDS; length=798bp; location=Sequence derived from: Chr_LG02-CM007362.1:20464981..20465778- (Lupinus angustifoliusback to top |