rna-TanjilR_19031
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Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Homology
BLAST of rna-TanjilR_19031 vs. DB:Swiss
Match: E131_ARATH (Glucan endo-1,3-beta-glucosidase 1 OS=Arabidopsis thaliana OX=3702 GN=At1g11820 PE=2 SV=3) HSP 1 Score: 88.5817 bits (218), Expect = 2.779e-17 Identity = 42/80 (52.50%), Postives = 53/80 (66.25%), Query Frame = 3
Query: 552 SYCIASPTASNTALQVALDYACGYGGADCSAIQSGGSCYNPNSIRDHASYAFNKYYQKN-PVPNSCNFGGTAVNTNTNPS 788
+YCIA LQ ALD+ACG G ++CS IQ G SCY PN+++ HAS+AFN YYQK SC+F G A+ T T+PS
Sbjct: 380 TYCIAMDGVDAKTLQAALDWACGPGRSNCSEIQPGESCYQPNNVKGHASFAFNSYYQKEGRASGSCDFKGVAMITTTDPS 459
BLAST of rna-TanjilR_19031 vs. DB:Swiss
Match: E137_ARATH (Glucan endo-1,3-beta-glucosidase 7 OS=Arabidopsis thaliana OX=3702 GN=At4g34480 PE=1 SV=2) HSP 1 Score: 86.2705 bits (212), Expect = 1.232e-16 Identity = 39/79 (49.37%), Postives = 54/79 (68.35%), Query Frame = 3
Query: 555 YCIASPTASNTALQVALDYACGYGGADCSAIQSGGSCYNPNSIRDHASYAFNKYYQKNPV-PNSCNFGGTAVNTNTNPS 788
+C+ A+N LQ +LD+ACG+G DC AIQ GG+C+ PN++ HA+YA N Y+QK+P P C+F TA T+ NPS
Sbjct: 364 WCVPKKGATNEELQASLDWACGHG-IDCGAIQPGGACFEPNNVVSHAAYAMNMYFQKSPKQPTDCDFSKTATVTSQNPS 441
BLAST of rna-TanjilR_19031 vs. DB:Swiss
Match: E133_ARATH (Glucan endo-1,3-beta-glucosidase 3 OS=Arabidopsis thaliana OX=3702 GN=At2g01630 PE=2 SV=2) HSP 1 Score: 85.5001 bits (210), Expect = 2.313e-16 Identity = 39/81 (48.15%), Postives = 50/81 (61.73%), Query Frame = 3
Query: 552 SYCIASPTASNTALQVALDYACGYGGADCSAIQSGGSCYNPNSIRDHASYAFNKYYQK-NPVPNSCNFGGTAVNTNTNPSK 791
++CIA LQ ALD+ACG G DCSA+ G SCY P+ + H++YAFN YYQK SC+F G A T T+PS+
Sbjct: 359 TFCIAKEKVDRKMLQAALDWACGPGKVDCSALMQGESCYEPDDVVAHSTYAFNAYYQKMGKASGSCDFKGVATVTTTDPSR 439
BLAST of rna-TanjilR_19031 vs. DB:Swiss
Match: PDCB5_ARATH (PLASMODESMATA CALLOSE-BINDING PROTEIN 5 OS=Arabidopsis thaliana OX=3702 GN=PDCB5 PE=2 SV=2) HSP 1 Score: 79.7221 bits (195), Expect = 5.834e-16 Identity = 36/81 (44.44%), Postives = 52/81 (64.20%), Query Frame = 3
Query: 555 YCIASPTASNTALQVALDYACGYGGADCSAIQSGGSCYNPNSIRDHASYAFNKYYQKNPVPN-SCNFGGTAVNTNTNPSKA 794
+C+A A +++LQ A+++ACG GGADC IQ GG C +P ++ AS+ FN YY KN + +CNF A T+ NPS+
Sbjct: 41 WCVAKNNAEDSSLQTAIEWACGQGGADCGPIQQGGPCNDPTDVQKMASFVFNNYYLKNGEEDEACNFNNNAALTSLNPSQG 121
BLAST of rna-TanjilR_19031 vs. DB:Swiss
Match: PDCB1_ARATH (PLASMODESMATA CALLOSE-BINDING PROTEIN 1 OS=Arabidopsis thaliana OX=3702 GN=PDCB1 PE=1 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 6.059e-16 Identity = 41/83 (49.40%), Postives = 55/83 (66.27%), Query Frame = 3
Query: 543 SGASYCIASPTASNTALQVALDYACGYGGADCSAIQSGGSCYNPNSIRDHASYAFNKYYQKN-PVPNSCNFGGTAVNTNTNPS 788
S AS+C+ S+T LQ LDYACG GADC+ + SC+NP+++R H +YA N ++QK P SCNF GTA TN++PS
Sbjct: 17 SSASWCVCKTGLSDTVLQATLDYACG-NGADCNPTKPKQSCFNPDNVRSHCNYAVNSFFQKKGQSPGSCNFDGTATPTNSDPS 98
BLAST of rna-TanjilR_19031 vs. DB:Swiss
Match: E1312_ARATH (Glucan endo-1,3-beta-glucosidase 12 OS=Arabidopsis thaliana OX=3702 GN=At4g29360 PE=2 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 6.264e-16 Identity = 39/79 (49.37%), Postives = 53/79 (67.09%), Query Frame = 3
Query: 555 YCIASPTASNTALQVALDYACGYGGADCSAIQSGGSCYNPNSIRDHASYAFNKYYQKNPVPN-SCNFGGTAVNTNTNPS 788
+CIAS AS T LQ ALD+ACG G DCSA+Q C+ P+++ HASYAFN YYQ++ + C+F G +V + +PS
Sbjct: 391 WCIASSQASVTELQTALDWACGPGNVDCSAVQPDQPCFEPDTVLSHASYAFNTYYQQSGASSIDCSFNGASVEVDKDPS 469
BLAST of rna-TanjilR_19031 vs. DB:Swiss
Match: E1313_ARATH (Glucan endo-1,3-beta-glucosidase 13 OS=Arabidopsis thaliana OX=3702 GN=At5g56590 PE=2 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 2.711e-15 Identity = 37/79 (46.84%), Postives = 52/79 (65.82%), Query Frame = 3
Query: 555 YCIASPTASNTALQVALDYACGYGGADCSAIQSGGSCYNPNSIRDHASYAFNKYYQKNPVPN-SCNFGGTAVNTNTNPS 788
+CIAS AS L+ ALD+ACG G DC+AIQ C+ P+++ HAS+ FN Y+Q+N + +C+FGG V N +PS
Sbjct: 369 WCIASSKASERDLKGALDWACGPGNVDCTAIQPSQPCFQPDTLVSHASFVFNSYFQQNRATDVACSFGGAGVKVNKDPS 447
BLAST of rna-TanjilR_19031 vs. DB:Swiss
Match: ALL10_OLEEU (Major pollen allergen Ole e 10 OS=Olea europaea OX=4146 PE=1 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 5.669e-15 Identity = 35/86 (40.70%), Postives = 50/86 (58.14%), Query Frame = 3
Query: 534 PMSSGASYCIASPTASNTALQVALDYACGYGGADCSAIQSGGSCYNPNSIRDHASYAFNKYYQ-KNPVPNSCNFGGTAVNTNTNPS 788
P +C+ A++ LQ +DY C G DC IQ+ G+C+NPN++R HASYA N +YQ K C+F GT T+++PS
Sbjct: 30 PTQGNKKWCVPKAEATDAQLQSNIDYVCSQSGMDCGPIQANGACFNPNTVRAHASYAMNSWYQSKGRNDFDCDFSGTGAITSSDPS 115
BLAST of rna-TanjilR_19031 vs. DB:Swiss
Match: E132_ARATH (Glucan endo-1,3-beta-glucosidase 2 OS=Arabidopsis thaliana OX=3702 GN=At1g66250 PE=2 SV=2) HSP 1 Score: 80.8777 bits (198), Expect = 7.558e-15 Identity = 39/80 (48.75%), Postives = 51/80 (63.75%), Query Frame = 3
Query: 552 SYCIASPTASNTALQVALDYACGYGGADCSAIQSGGSCYNPNSIRDHASYAFNKYY-QKNPVPNSCNFGGTAVNTNTNPS 788
+YC A A LQ ALD+ACG G DCS I+ G +CY P+++ HA+YAF+ YY Q P++CNF G A T T+PS
Sbjct: 367 TYCTAREGADTKMLQAALDWACGPGKIDCSPIKQGETCYEPDNVVAHANYAFDTYYHQTGNNPDACNFNGVASITTTDPS 446
BLAST of rna-TanjilR_19031 vs. DB:Swiss
Match: E134_ARATH (Glucan endo-1,3-beta-glucosidase 4 OS=Arabidopsis thaliana OX=3702 GN=At3g13560 PE=2 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 1.241e-14 Identity = 37/79 (46.84%), Postives = 51/79 (64.56%), Query Frame = 3
Query: 555 YCIASPTASNTALQVALDYACGYGGADCSAIQSGGSCYNPNSIRDHASYAFNKYYQK-NPVPNSCNFGGTAVNTNTNPS 788
+C+A A + L L++ACG G A+C+AIQ G CY PN ++ HAS+AFN YYQK +C+F GTA+ T +PS
Sbjct: 362 FCVAKADADDDKLVDGLNWACGQGRANCAAIQPGQPCYLPNDVKSHASFAFNDYYQKMKSAGGTCDFDGTAITTTRDPS 440 The following BLAST results are available for this feature:
BLAST of rna-TanjilR_19031 vs. DB:Swiss
Analysis Date: 2020-01-28 (BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot) Total hits: 10
InterPro
Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28
Sequences
The
following sequences are available for this feature:
mRNA sequence >rna-TanjilR_19031_La_Tanjil_v1.0 ID=rna-TanjilR_19031_La_Tanjil_v1.0; Name=rna-TanjilR_19031; organism=Lupinus angustifolius; type=mRNA; length=1638bpback to top protein sequence of rna-TanjilR_19031_La_Tanjil_v1.0 >rna-TanjilR_19031_La_Tanjil_v1.0 ID=rna-TanjilR_19031_La_Tanjil_v1.0; Name=rna-TanjilR_19031_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=257bpback to top mRNA from alignment at Chr_LG02-CM007362.1:23704657..23706294+ Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>rna-TanjilR_19031_La_Tanjil_v1.0 ID=rna-TanjilR_19031_La_Tanjil_v1.0; Name=rna-TanjilR_19031; organism=Lupinus angustifolius; type=mRNA; length=1638bp; location=Sequence derived from: Chr_LG02-CM007362.1:23704657..23706294+ (Lupinus angustifoliusback to top Coding sequence (CDS) from alignment at Chr_LG02-CM007362.1:23704657..23706294+ >rna-TanjilR_19031_La_Tanjil_v1.0 ID=rna-TanjilR_19031_La_Tanjil_v1.0; Name=rna-TanjilR_19031; organism=Lupinus angustifolius; type=CDS; length=774bp; location=Sequence derived from: Chr_LG02-CM007362.1:23704657..23706294+ (Lupinus angustifoliusback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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