rna-TanjilR_08186

Transcript Overview
Namerna-TanjilR_08186
Unique Namerna-TanjilR_08186_La_Tanjil_v1.0
TypemRNA
OrganismLupinus angustifolius (blue lupin)
Sequence length563
Producthypothetical protein
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr_LG03-CM007363.1supercontigChr_LG03-CM007363.1:4263182..4263744 -Lupinus angustifolius L. Tanjil genome v1.0n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Lupinus angustifolius L. Tanjil genome v1.02019-09-17
InterProScan: L. angustifolius cv. Tanjil genome v1.02020-01-28
BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot2020-01-28
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
ananL089Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ananL279Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ananR520Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaiR0895Cicer arietinum ICC 4958 genome v2Cicer arietinum
anccR0930Cajanus cajan Asha genome v1.0Cajanus cajan
ancaR0747Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ancaR0757Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
anccR1002Cajanus cajan Asha genome v1.0Cajanus cajan
ancaR0802Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ancrR0906Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
anpsR0626Pisum sativum Cameor genome v1aPisum sativum
anpsR0628Pisum sativum Cameor genome v1aPisum sativum
anpsR0654Pisum sativum Cameor genome v1aPisum sativum
anpvR0819Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
anvuR0743Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
anvuR0772Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
anasR0822Vigna angularis Jingnong 6 genome v1.1Vigna angularis
anasR0846Vigna angularis Jingnong 6 genome v1.1Vigna angularis
anasR0875Vigna angularis Jingnong 6 genome v1.1Vigna angularis
anzwsR0709Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
anzwsR0733Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
antifR0743Vicia faba cv. Tiffany genome v1.0Vicia faba
anvfhR0749Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
anvfhR0761Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
antifR0760Vicia faba cv. Tiffany genome v1.0Vicia faba
anvfhR0771Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
anvrvR0711Vigna radiata cv. VC1973A genome v6.0Vigna radiata
anvuaR0719Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
anvuaR0728Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
anvssR0842Vicia sativa cv. Studenica genome v1.0Vicia sativa
anvssR0854Vicia sativa cv. Studenica genome v1.0Vicia sativa
anvssR0890Vicia sativa cv. Studenica genome v1.0Vicia sativa
ancanR0686Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
ancanR0696Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
anavjR0810Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
anavjR0831Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
ancarR0726Cicer arietinum
ancarR0744Cicer arietinum
anccaR0747Cajanus cajan cv. Asha genome v2.0Cajanus cajan
anccaR0759Cajanus cajan cv. Asha genome v2.0Cajanus cajan
anvumR0822Vigna umbellata FF25 genome v1.0Vigna umbellata
anvumR0846Vigna umbellata FF25 genome v1.0Vigna umbellata
anvvaR0785Vicia villosa cv. AU Merit genome v1.0Vicia villosa
anvvaR0786Vicia villosa cv. AU Merit genome v1.0Vicia villosa
anvvaR0801Vicia villosa cv. AU Merit genome v1.0Vicia villosa
anvstR0803Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
anvstR0825Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
anvasR0835Vigna angularis cv. Shumari genome v1.a1Vigna angularis
anvstR0849Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
anpvfR0859Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
anvunR0708Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
anvunR0737Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata

Orthologs
Gene/TranscriptAssemblySpecies
Cc_v2.0_15195.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
Psat6g009640.1Pisum sativum Cameor genome v1aPisum sativum
Cc_v2.0_10930.2Cajanus cajan cv. Asha genome v2.0Cajanus cajan
evm.model.Chr09.1281.2.62113175Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
rna-TanjilR_27329Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
gene-TanjilG_08186gene-TanjilG_08186_La_Tanjil_v1.0Lupinus angustifoliusgene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_08186rna-TanjilR_08186_La_Tanjil_v1.0-proteinLupinus angustifoliuspolypeptide
rna-TanjilR_08186_La_Tanjil_v1.0rna-TanjilR_08186_La_Tanjil_v1.0Lupinus angustifoliuspolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_08186_La_Tanjil_v1.0-CDS-Chr_LG03-CM007363.1_La_Tanjil_v1.0-1579734366:4263603..4263744rna-TanjilR_08186_La_Tanjil_v1.0-CDS-Chr_LG03-CM007363.1_La_Tanjil_v1.0-1579734366:4263603..4263744Lupinus angustifoliusCDS
rna-TanjilR_08186_La_Tanjil_v1.0-CDS-Chr_LG03-CM007363.1_La_Tanjil_v1.0-1579734366:4263182..4263204rna-TanjilR_08186_La_Tanjil_v1.0-CDS-Chr_LG03-CM007363.1_La_Tanjil_v1.0-1579734366:4263182..4263204Lupinus angustifoliusCDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_08186_La_Tanjil_v1.0-exon-Chr_LG03-CM007363.1_La_Tanjil_v1.0-1579734366:4263603..4263744rna-TanjilR_08186_La_Tanjil_v1.0-exon-Chr_LG03-CM007363.1_La_Tanjil_v1.0-1579734366:4263603..4263744Lupinus angustifoliusexon
rna-TanjilR_08186_La_Tanjil_v1.0-exon-Chr_LG03-CM007363.1_La_Tanjil_v1.0-1579734366:4263182..4263204rna-TanjilR_08186_La_Tanjil_v1.0-exon-Chr_LG03-CM007363.1_La_Tanjil_v1.0-1579734366:4263182..4263204Lupinus angustifoliusexon


Homology
The following BLAST results are available for this feature:
BLAST of rna-TanjilR_08186 vs.
Analysis Date: 2020-01-28 (BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..28
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 12..28

Sequences
The following sequences are available for this feature:

mRNA sequence

>rna-TanjilR_08186_La_Tanjil_v1.0 ID=rna-TanjilR_08186_La_Tanjil_v1.0; Name=rna-TanjilR_08186; organism=Lupinus angustifolius; type=mRNA; length=563bp
ATGGAGTTAAAAGGTTCATTAAGTTATGGAAGAGGTAATTTATCTGATGA
GGGCAACACTCTAGAGAATTCTGTAACTCCTATTTCTCACAAGTCCCCTG
TTGACGAAGCACTGGTTGCAAATCTTATGACTCCATCTTCAGGTATATGT
TTAACCCTAAACTCCGATATTCTTTTGTCGTTTACCATAAACATAATGTT
TGTTGGTTCTTAGTTACAAGATTTAGGTTTTCCACCCTCCCATTCTTTTG
GAAATTAGAATCTTACTTTTTGGTCACATCAAAGGGGATACATCAATTAC
AACTGGTGGAGAGCAATATCTCTTTTCTGAAAACCTTTTATGTGGAATAA
TCATCCCACATAAAATACTTTTTGCTTCCCAACATTCTCTTCATCATTGA
AGCCCTTTGAGTATGCCTATCTAAAAATAAATGCATGGCAATATTCCACT
TGAAAGAGATAGGGCTGAAAGCTGAATACAAATAGGCGCAACATCACACA
TGCTCATGAGTTATGCAATAAAACATTGGGTTTGTAACAGAATTGATATC
TTTATTCTTGTAA
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protein sequence of rna-TanjilR_08186_La_Tanjil_v1.0

>rna-TanjilR_08186_La_Tanjil_v1.0 ID=rna-TanjilR_08186_La_Tanjil_v1.0; Name=rna-TanjilR_08186_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=54bp
MELKGSLSYGRGNLSDEGNTLENSVTPISHKSPVDEALVANLMTPSSELI
SLFL
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mRNA from alignment at Chr_LG03-CM007363.1:4263182..4263744-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna-TanjilR_08186_La_Tanjil_v1.0 ID=rna-TanjilR_08186_La_Tanjil_v1.0; Name=rna-TanjilR_08186; organism=Lupinus angustifolius; type=mRNA; length=563bp; location=Sequence derived from: Chr_LG03-CM007363.1:4263182..4263744- (Lupinus angustifolius
ATGGAGTTAAAAGGTTCATTAAGTTATGGAAGAGGTAATTTATCTGATGA
GGGCAACACTCTAGAGAATTCTGTAACTCCTATTTCTCACAAGTCCCCTG
TTGACGAAGCACTGGTTGCAAATCTTATGACTCCATCTTCAGGTATATGT
TTAACCCTAAACTCCGATATTCTTTTGTCGTTTACCATAAACATAATGTT
TGTTGGTTCTTAGTTACAAGATTTAGGTTTTCCACCCTCCCATTCTTTTG
GAAATTAGAATCTTACTTTTTGGTCACATCAAAGGGGATACATCAATTAC
AACTGGTGGAGAGCAATATCTCTTTTCTGAAAACCTTTTATGTGGAATAA
TCATCCCACATAAAATACTTTTTGCTTCCCAACATTCTCTTCATCATTGA
AGCCCTTTGAGTATGCCTATCTAAAAATAAATGCATGGCAATATTCCACT
TGAAAGAGATAGGGCTGAAAGCTGAATACAAATAGGCGCAACATCACACA
TGCTCATGAGTTATGCAATAAAACATTGGGTTTGTAACAGAATTGATATC
TTTATTCTTGTAA
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Coding sequence (CDS) from alignment at Chr_LG03-CM007363.1:4263182..4263744-

>rna-TanjilR_08186_La_Tanjil_v1.0 ID=rna-TanjilR_08186_La_Tanjil_v1.0; Name=rna-TanjilR_08186; organism=Lupinus angustifolius; type=CDS; length=165bp; location=Sequence derived from: Chr_LG03-CM007363.1:4263182..4263744- (Lupinus angustifolius
ATGGAGTTAAAAGGTTCATTAAGTTATGGAAGAGGTAATTTATCTGATGA
GGGCAACACTCTAGAGAATTCTGTAACTCCTATTTCTCACAAGTCCCCTG
TTGACGAAGCACTGGTTGCAAATCTTATGACTCCATCTTCAGAATTGATA
TCTTTATTCTTGTAA
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