rna-TanjilR_01097
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Homology
BLAST of rna-TanjilR_01097 vs. DB:Swiss
Match: RMS3_PEA (Strigolactone esterase RMS3 OS=Pisum sativum OX=3888 GN=RMS3 PE=1 SV=1) HSP 1 Score: 251.521 bits (641), Expect = 8.688e-79 Identity = 118/143 (82.52%), Postives = 132/143 (92.31%), Query Frame = 1 Query: 1180 RFMND-KDYHGGFDEGDFEQVFSAMESNYEAWVNGFAPLAIGADVPEAVREFSRTLFNMRPDISLFVSRTVYNTDLRGILGLVKVPCVIMQTARDCSVPATVAMYMLEHLGGRSTVLWLDTEGHLPHLSAPSYLASQLDIALS 1605 RF+ND ++YHGGF++G+ E VFSAME+NYEAWVNGFAPLA+GADVP AVREFSRTLFNMRPDISLFVSRTV+N+DLRGILGLV VPC IMQTARD SVPA+VA YM EH+GG+STV WLDTEGHLPHLSAPSYLA QL+IALS Sbjct: 124 RFLNDGENYHGGFEQGEIEHVFSAMEANYEAWVNGFAPLAVGADVPTAVREFSRTLFNMRPDISLFVSRTVFNSDLRGILGLVNVPCCIMQTARDMSVPASVATYMKEHIGGKSTVQWLDTEGHLPHLSAPSYLAHQLEIALS 266 HSP 2 Score: 227.639 bits (579), Expect = 1.211e-69 Identity = 107/124 (86.29%), Postives = 115/124 (92.74%), Query Frame = 1 Query: 1 MGTSILDALNVRVEGTGDRYLVLAHGFGTDKSAWQRVLPYFTTRYSVILYDLVCAGSVNPDYFDYRRYTTLDSYVDDLLNILDALLVTRCVYVGHSISAMIGMLASIRRPELFTKLILIGASPR 372 MGT ILDA NVRVEG+GD+YLV AHGFGTD+SAWQRVLPYFT Y VILYDLVCAGSVNPD+FD+RRYTTLD+YVDDLLNILD+L VTRC YVGHSISAM GMLASIRRPELF+KLILIGASPR Sbjct: 1 MGTPILDAFNVRVEGSGDKYLVFAHGFGTDQSAWQRVLPYFTRSYKVILYDLVCAGSVNPDHFDFRRYTTLDAYVDDLLNILDSLHVTRCAYVGHSISAMTGMLASIRRPELFSKLILIGASPR 124
BLAST of rna-TanjilR_01097 vs. DB:Swiss
Match: DAD2_PETHY (Probable strigolactone esterase DAD2 OS=Petunia hybrida OX=4102 GN=DAD2 PE=1 SV=1) HSP 1 Score: 236.884 bits (603), Expect = 4.324e-73 Identity = 108/144 (75.00%), Postives = 129/144 (89.58%), Query Frame = 1 Query: 1180 RFMNDKDYHGGFDEGDFEQVFSAMESNYEAWVNGFAPLAIGADVPEAVREFSRTLFNMRPDISLFVSRTVYNTDLRGILGLVKVPCVIMQTARDCSVPATVAMYMLEHLGGRSTVLWLDTEGHLPHLSAPSYLASQLDIALSSQ 1611 RF+ND+DYHGGF++G+ E+VFSAME+NYEAWVNGFAPLA+GADVP AVREFSRTLFNMRPDI+LFVSRTV+N+D+RG+LGLVKVPC I QTARD SVPA+VA Y+ HLGG++TV WL+ EGHLPHLSAP+ LA +L ALS + Sbjct: 124 RFLNDEDYHGGFEQGEIEKVFSAMEANYEAWVNGFAPLAVGADVPAAVREFSRTLFNMRPDITLFVSRTVFNSDMRGVLGLVKVPCHIFQTARDHSVPASVATYLKNHLGGKNTVHWLNIEGHLPHLSAPTLLAQELRRALSHR 267 HSP 2 Score: 205.297 bits (521), Expect = 4.945e-61 Identity = 96/124 (77.42%), Postives = 111/124 (89.52%), Query Frame = 1 Query: 1 MGTSILDALNVRVEGTGDRYLVLAHGFGTDKSAWQRVLPYFTTRYSVILYDLVCAGSVNPDYFDYRRYTTLDSYVDDLLNILDALLVTRCVYVGHSISAMIGMLASIRRPELFTKLILIGASPR 372 MG ++LDALNVRV G+G+R LVLAHGFGTD+SAW R+LP+F Y V+LYDLVCAGSVNPD+FD+RRYTTLD YVDDLL+ILDAL + C YVGHS+SAMIG+LASIRRPELF+KLILIGASPR Sbjct: 1 MGQTLLDALNVRVVGSGERVLVLAHGFGTDQSAWNRILPFFLRDYRVVLYDLVCAGSVNPDFFDFRRYTTLDPYVDDLLHILDALGIDCCAYVGHSVSAMIGILASIRRPELFSKLILIGASPR 124
BLAST of rna-TanjilR_01097 vs. DB:Swiss
Match: D14_ARATH (Strigolactone esterase D14 OS=Arabidopsis thaliana OX=3702 GN=D14 PE=1 SV=1) HSP 1 Score: 222.246 bits (565), Expect = 1.845e-67 Identity = 108/149 (72.48%), Postives = 127/149 (85.23%), Query Frame = 1 Query: 1156 LINFV*SFRFMNDKDYHGGFDEGDFEQVFSAMESNYEAWVNGFAPLAIGADVPEAVREFSRTLFNMRPDISLFVSRTVYNTDLRGILGLVKVPCVIMQTARDCSVPATVAMYMLEHLGGRSTVLWLDTEGHLPHLSAPSYLASQLDIAL 1602 LI F S RF+ND+DYHGGF+EG+ E+VFSAME+NYEAWV+GFAPLA+GADVP AVREFSRTLFNMRPDISLFVSRTV+N+DLRG+LGLV+VP ++QTA+D SVPA+VA Y+ HLGG +TV L TEGHLP LSAP+ LA L AL Sbjct: 119 LIGF--SPRFLNDEDYHGGFEEGEIEKVFSAMEANYEAWVHGFAPLAVGADVPAAVREFSRTLFNMRPDISLFVSRTVFNSDLRGVLGLVRVPTCVIQTAKDVSVPASVAEYLRSHLGGDTTVETLKTEGHLPQLSAPAQLAQFLRRAL 265 HSP 2 Score: 200.29 bits (508), Expect = 4.188e-59 Identity = 93/121 (76.86%), Postives = 106/121 (87.60%), Query Frame = 1 Query: 10 SILDALNVRVEGTGDRYLVLAHGFGTDKSAWQRVLPYFTTRYSVILYDLVCAGSVNPDYFDYRRYTTLDSYVDDLLNILDALLVTRCVYVGHSISAMIGMLASIRRPELFTKLILIGASPR 372 +IL+ALNVRV GTGDR L LAHGFGTD+SAW +LPYFT Y V+LYDLVCAGSVNPDYFD+ RYTTLD YVDDLLNI+D+L + C YVGHS+SAMIG++ASIRRPELF+KLILIG SPR Sbjct: 5 NILEALNVRVVGTGDRILFLAHGFGTDQSAWHLILPYFTQNYRVVLYDLVCAGSVNPDYFDFNRYTTLDPYVDDLLNIVDSLGIQNCAYVGHSVSAMIGIIASIRRPELFSKLILIGFSPR 125
BLAST of rna-TanjilR_01097 vs. DB:Swiss
Match: D14_ORYSJ (Strigolactone esterase D14 OS=Oryza sativa subsp. japonica OX=39947 GN=D14 PE=1 SV=1) HSP 1 Score: 209.534 bits (532), Expect = 6.229e-62 Identity = 96/142 (67.61%), Postives = 116/142 (81.69%), Query Frame = 1 Query: 1180 RFMNDKDYHGGFDEGDFEQVFSAMESNYEAWVNGFAPLAIGADVPEAVREFSRTLFNMRPDISLFVSRTVYNTDLRGILGLVKVPCVIMQTARDCSVPATVAMYMLEHLGGRSTVLWLDTEGHLPHLSAPSYLASQLDIALS 1605 RF+ND DYHGGF+ + +QVF AM +NY AW G+APLA+GADVP AV+EFSRTLFNMRPDISL V +TV+ TDLRG+LG+V+ PCV++QT RD SVPA+VA Y+ HLGGR+TV +L TEGHLPHLSAPS LA L AL+ Sbjct: 175 RFLNDSDYHGGFELEEIQQVFDAMGANYSAWATGYAPLAVGADVPAAVQEFSRTLFNMRPDISLHVCQTVFKTDLRGVLGMVRAPCVVVQTTRDVSVPASVAAYLKAHLGGRTTVEFLQTEGHLPHLSAPSLLAQVLRRALA 316 HSP 2 Score: 190.274 bits (482), Expect = 1.142e-54 Identity = 87/121 (71.90%), Postives = 104/121 (85.95%), Query Frame = 1 Query: 10 SILDALNVRVEGTGDRYLVLAHGFGTDKSAWQRVLPYFTTRYSVILYDLVCAGSVNPDYFDYRRYTTLDSYVDDLLNILDALLVTRCVYVGHSISAMIGMLASIRRPELFTKLILIGASPR 372 +L LNVRV G+G+R +VL+HGFGTD+SAW RVLPY T + V+LYDLVCAGSVNPD+FD+RRY LD+YVDDLL ILDAL + RC +VGHS+SAMIG+LASIRRP+LF KL+LIGASPR Sbjct: 55 KLLQILNVRVVGSGERVVVLSHGFGTDQSAWSRVLPYLTRDHRVVLYDLVCAGSVNPDHFDFRRYDNLDAYVDDLLAILDALRIPRCAFVGHSVSAMIGILASIRRPDLFAKLVLIGASPR 175
BLAST of rna-TanjilR_01097 vs. DB:Swiss
Match: D14L_ORYSJ (Probable esterase D14L OS=Oryza sativa subsp. japonica OX=39947 GN=D14L PE=1 SV=1) HSP 1 Score: 157.918 bits (398), Expect = 4.168e-43 Identity = 71/133 (53.38%), Postives = 103/133 (77.44%), Query Frame = 1 Query: 1174 SFRFMNDKDYHGGFDEGDFEQVFSAMESNYEAWVNGFAPLAIGADVPE-AVREFSRTLFNMRPDISLFVSRTVYNTDLRGILGLVKVPCVIMQTARDCSVPATVAMYMLEHLGGRSTVLWLDTEGHLPHLSAP 1569 S R++ND DY+GGF++ D +++F AM SNY+AW +GFAPL +G D+ AV+EFSRTLFN+RPDI+L V++T++ +D+R +L LV VPC I+Q+ +D +VP V+ Y+ +HLGG S V + +EGHLP LS+P Sbjct: 122 SPRYLNDVDYYGGFEQEDLDELFEAMGSNYKAWCSGFAPLCVGGDMESVAVQEFSRTLFNIRPDIALSVAQTIFQSDVRSLLPLVTVPCHIVQSTKDLAVPVVVSEYLHKHLGGDSIVEVMPSEGHLPQLSSP 254 HSP 2 Score: 143.665 bits (361), Expect = 7.839e-38 Identity = 67/119 (56.30%), Postives = 88/119 (73.95%), Query Frame = 1 Query: 19 DALNVRVEGTGDR-YLVLAHGFGTDKSAWQRVLPYFTTRYSVILYDLVCAGSVNPDYFDYRRYTTLDSYVDDLLNILDALLVTRCVYVGHSISAMIGMLASIRRPELFTKLILIGASPR 372 +A N+RV G G R +VLAHGFGTD+S W+ ++P+ Y V+L+D + AG NPDYFD+ RY TL+ Y DLL IL L V C+YVGHS+SA+IG +ASI RP+LF+KL+L+ ASPR Sbjct: 6 EAHNLRVVGEGKRGVIVLAHGFGTDQSVWKHLVPHLVADYRVVLFDTMGAGPTNPDYFDFSRYATLEGYALDLLAILQELRVASCIYVGHSVSAVIGAIASISRPDLFSKLVLLSASPR 124
BLAST of rna-TanjilR_01097 vs. DB:Swiss
Match: KAI2_ARATH (Probable esterase KAI2 OS=Arabidopsis thaliana OX=3702 GN=KAI2 PE=1 SV=1) HSP 1 Score: 150.599 bits (379), Expect = 2.295e-40 Identity = 69/131 (52.67%), Postives = 96/131 (73.28%), Query Frame = 1 Query: 1180 RFMNDKDYHGGFDEGDFEQVFSAMESNYEAWVNGFAPLAIGADVPE-AVREFSRTLFNMRPDISLFVSRTVYNTDLRGILGLVKVPCVIMQTARDCSVPATVAMYMLEHLGGRSTVLWLDTEGHLPHLSAP 1569 R++ND DY GGF++ D Q+F A+ SNY+AW GFAPLA+G D+ AV+EFSRTLFNMRPDI+L V +T++ +D+R IL V VPC I+Q+ +D +VP V+ Y+ +LG S V + ++GHLP LS+P Sbjct: 123 RYVNDVDYQGGFEQEDLNQLFEAIRSNYKAWCLGFAPLAVGGDMDSIAVQEFSRTLFNMRPDIALSVGQTIFQSDMRQILPFVTVPCHILQSVKDLAVPVVVSEYLHANLGCESVVEVIPSDGHLPQLSSP 253 HSP 2 Score: 143.28 bits (360), Expect = 1.026e-37 Identity = 62/118 (52.54%), Postives = 91/118 (77.12%), Query Frame = 1 Query: 19 DALNVRVEGTGDRYLVLAHGFGTDKSAWQRVLPYFTTRYSVILYDLVCAGSVNPDYFDYRRYTTLDSYVDDLLNILDALLVTRCVYVGHSISAMIGMLASIRRPELFTKLILIGASPR 372 +A NV+V G+G+ +VL HGFGTD+S W+ ++P+ Y V+LYD + AG+ NPDYFD+ RY+ L+ Y DL+ IL+ L + C++VGHS+SAMIG+LAS+ RP+LF+K+++I ASPR Sbjct: 6 EAHNVKVIGSGEATIVLGHGFGTDQSVWKHLVPHLVDDYRVVLYDNMGAGTTNPDYFDFDRYSNLEGYSFDLIAILEDLKIESCIFVGHSVSAMIGVLASLNRPDLFSKIVMISASPR 123
BLAST of rna-TanjilR_01097 vs. DB:Swiss
Match: RSBQ_BACSU (Sigma factor SigB regulation protein RsbQ OS=Bacillus subtilis (strain 168) OX=224308 GN=rsbQ PE=1 SV=1) HSP 1 Score: 122.865 bits (307), Expect = 2.942e-30 Identity = 57/123 (46.34%), Postives = 82/123 (66.67%), Query Frame = 1 Query: 1 MGTSILDALNVRVEGTGDRYLVLAHGFGTDKSAWQRVLPYFTTRYSVILYDLVCAGSVNPDYFDYRRYTTLDSYVDDLLNILDALLVTRCVYVGHSISAMIGMLASIRRPELFTKLILIGASP 369 M +IL +V+V+G+G ++ A GFG D+S W V P F + VIL+D V +G + +D RY TLD Y D+L++ +AL + V+VGHS+ A+IGMLASIRRPELF+ L+++G SP Sbjct: 1 MNEAILSRNHVKVKGSGKASIMFAPGFGCDQSVWNAVAPAFEEDHRVILFDYVGSGHSDLRAYDLNRYQTLDGYAQDVLDVCEALDLKETVFVGHSVGALIGMLASIRRPELFSHLVMVGPSP 123 HSP 2 Score: 73.1738 bits (178), Expect = 4.004e-13 Identity = 45/131 (34.35%), Postives = 66/131 (50.38%), Query Frame = 1 Query: 1183 FMNDK-DYHGGFDEGDFEQVFSAMESNYEAWVNGFAPLAIGA-DVPEAVREFSRTLFNMRPDISLFVSRTVYNTDLRGILGLVKVPCVIMQTARDCSVPATVAMYMLEHLGGRSTVLWLDTEGHLPHLSAP 1569 ++ND +Y+GGF+E + ME NY W FA + D PE E + P I+ ++ + +D R L V VP +I+Q A D PATV YM +HL S++ ++ GH PH+S P Sbjct: 125 YLNDPPEYYGGFEEEQLLGLLEMMEKNYIGWATVFAATVLNQPDRPEIKEELESRFCSTDPVIARQFAKAAFFSDHREDLSKVTVPSLILQCADDIIAPATVGKYMHQHL-PYSSLKQMEARGHCPHMSHP 254
BLAST of rna-TanjilR_01097 vs. DB:Swiss
Match: YUGF_BACSU (Uncharacterized hydrolase YugF OS=Bacillus subtilis (strain 168) OX=224308 GN=yugF PE=3 SV=1) HSP 1 Score: 61.6178 bits (148), Expect = 3.195e-9 Identity = 38/120 (31.67%), Postives = 63/120 (52.50%), Query Frame = 1 Query: 16 LDALNVRVE---GTGDRYLVLAHGFGTDKSAWQRVLPYFTTRYSVILYDLVCAGSVNPDYFDYRRYTTLDSYVDDLLNILDALLVTRCVYVGHSISAMIGMLASIRRPELFTKLILIGAS 366 +D +NV E G + LV HGF + ++++V+P +Y +I DL G Y L V + IL+ L V + V VGHS+ I + A++++PELF+K++L+ +S Sbjct: 12 VDGVNVYYEHYQNPGRQTLVCVHGFLSSAFSFRKVIPLLRDKYDIIALDLPPFGQSEKSRTFIYTYQNLAKLV---IGILEHLQVKQAVLVGHSMGGQISLSAALQKPELFSKVVLLCSS 128
BLAST of rna-TanjilR_01097 vs. DB:Swiss
Match: ELH2_ACIAD (3-oxoadipate enol-lactonase 2 OS=Acinetobacter baylyi (strain ATCC 33305 / BD413 / ADP1) OX=62977 GN=catD PE=1 SV=3) HSP 1 Score: 60.077 bits (144), Expect = 1.111e-8 Identity = 35/118 (29.66%), Postives = 59/118 (50.00%), Query Frame = 1 Query: 22 ALNVRVEGTGDR-YLVLAHGFGTDKSAWQRVLPYFTTRYSVILYDLVCAGSVNPDYFDYRRYTTLDSYVDDLLNILDALLVTRCVYVGHSISAMIGMLASIRRPELFTKLILIGASPR 372 ALN G DR L+ ++ GT+ S WQ+ + YF +Y VI YD G+ + YR +D D++ +LD L + + + G S+ + G +I PE F ++I+ + + Sbjct: 16 ALNYATFGQADRPALIFSNSLGTNLSMWQQQIAYFQDKYFVICYDTRGHGASSTPVGPYR----IDQLGTDVIALLDHLQIPQATFCGISMGGLTGQWLAIHFPERFNQVIVANTAAK 129
BLAST of rna-TanjilR_01097 vs. DB:Swiss
Match: RUTD_PSEU5 (Putative aminoacrylate hydrolase RutD OS=Pseudomonas stutzeri (strain A1501) OX=379731 GN=rutD PE=3 SV=1) HSP 1 Score: 59.3066 bits (142), Expect = 2.074e-8 Identity = 31/101 (30.69%), Postives = 54/101 (53.47%), Query Frame = 1 Query: 61 LVLAHGFGTDKSAWQRVLPYFTTRYSVILYDLVCAGSVNPDYFDYRRYTTLDSYVDDLLNILDALLVTRCVYVGHSISAMIGMLASIRRPELFTKLILIGA 363 LVL+ G G + W LP T Y V++YD + N + +++S +LL +LD L + RC ++GH++ ++G+ ++ RP+L L+ I A Sbjct: 16 LVLSSGLGGAAAFWLPQLPALTQDYRVLVYDQL---GTNKSPANLPAGYSIESMAVELLELLDTLGIRRCHFIGHALGGLVGLQIALLRPQLLQSLVPINA 113 The following BLAST results are available for this feature:
BLAST of rna-TanjilR_01097 vs. DB:Swiss
Analysis Date: 2020-01-28 (BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot) Total hits: 10
InterPro
Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28
Sequences
The
following sequences are available for this feature:
mRNA sequence >rna-TanjilR_01097_La_Tanjil_v1.0 ID=rna-TanjilR_01097_La_Tanjil_v1.0; Name=rna-TanjilR_01097; organism=Lupinus angustifolius; type=mRNA; length=1614bpback to top protein sequence of rna-TanjilR_01097_La_Tanjil_v1.0 >rna-TanjilR_01097_La_Tanjil_v1.0 ID=rna-TanjilR_01097_La_Tanjil_v1.0; Name=rna-TanjilR_01097_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=267bpback to top mRNA from alignment at Chr_LG03-CM007363.1:4921685..4923298- Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below.>rna-TanjilR_01097_La_Tanjil_v1.0 ID=rna-TanjilR_01097_La_Tanjil_v1.0; Name=rna-TanjilR_01097; organism=Lupinus angustifolius; type=mRNA; length=1614bp; location=Sequence derived from: Chr_LG03-CM007363.1:4921685..4923298- (Lupinus angustifoliusback to top Coding sequence (CDS) from alignment at Chr_LG03-CM007363.1:4921685..4923298- >rna-TanjilR_01097_La_Tanjil_v1.0 ID=rna-TanjilR_01097_La_Tanjil_v1.0; Name=rna-TanjilR_01097; organism=Lupinus angustifolius; type=CDS; length=804bp; location=Sequence derived from: Chr_LG03-CM007363.1:4921685..4923298- (Lupinus angustifoliusback to top |