rna-TanjilR_13980
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Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Homology
BLAST of rna-TanjilR_13980 vs. DB:Swiss
Match: FLZ10_ARATH (FCS-Like Zinc finger 10 OS=Arabidopsis thaliana OX=3702 GN=FLZ10 PE=1 SV=1) HSP 1 Score: 114.775 bits (286), Expect = 4.136e-27 Identity = 102/319 (31.97%), Postives = 147/319 (46.08%), Query Frame = 1
Query: 118 MKSHSIFNHPCLFVGLGPKILLDSDSMRSPTSPLDARVLSNLGNPVITPRSTISTLESGNHRSWDYCKVGLSIIDSLEDCSKHHSLSPQIMIKTPN-----FKTYMDSFESSKSLPKDFCKSPYTQNGSTFHKGESSVVFEIGESSLEHELFGKTRSCSLYSCSPFKTLSGLTDSDNGNNFALKDKDSITQMSTPPHFIGGXXXXXXXXXXXXXXXEFIRTLSASEIELSEDYTCVISHGSNPKTTHIFGDCILET--HSXXXXXXXXXXXXXXGGVTLMDNMLHNTHTPIQY-PSIDFLTFCQHCNKKLLEGKDIYIY 1050
++SH + + +F G P D +S SPTSPLD R+ S LGNP S+ ++ G RSWD KVGLSI+ SL D H S I++ +P+ F + M S + L + F K+ ++ + VFEIG ++ K+ S CS NF++ + P GG + S++E+SEDYTCVISHG NPKTTH +GD ++E+ K+E++ V +D TP+ P DFL+FC C+KKL G+DIY+Y
Sbjct: 25 IRSHKLISS--VFEGKCPS---DYESAWSPTSPLDFRLFSTLGNPFAA--SSSRSIWRGKQRSWDSGKVGLSIVHSLVD-DHHTDSSATIVLPSPDSKNIIFGSLMRSGQKPHLLSQPFTKALMPKDVIP------NAVFEIGHDVIDVLELRKSGSVDAAYCS------------GAENFSVNNNACQVTKQDPGSLNGG---------------------TESDMEISEDYTCVISHGPNPKTTHFYGDQVMESVEREELKNRCCKNEKESIFAVAPLD-----LTTPVDVLPPKDFLSFCYGCSKKLGMGEDIYMY 291
BLAST of rna-TanjilR_13980 vs. DB:Swiss
Match: FLZ11_ARATH (FCS-Like Zinc finger 11 OS=Arabidopsis thaliana OX=3702 GN=FLZ11 PE=1 SV=1) HSP 1 Score: 97.0561 bits (240), Expect = 4.640e-21 Identity = 111/358 (31.01%), Postives = 151/358 (42.18%), Query Frame = 1
Query: 1 MLKNKTKSLHKDQQQMGLMTNLDVNLDNHFSQSHTLGHNMKSHSIFNHPCLFVGLG----PKILLDSDSMRSPTSPLDARVLSNLGNPVI--TPRSTISTLESGNHRSWDYCKVGLSIIDSLEDCSKHHSLSPQIMIKTPNFKTYMDSFESSKSLPKDFCKSPYTQNGSTFHKGESSVVFEIGESSLEHELFG-KTRSCSLYSCSPFKTLSGLTDSDNGNNFALKDKDSITQMSTPPHFIGGXXXXXXXXXXXXXXXEFIRTLSASEIELSEDYTCVISHGSNPKTTHIFGDCILETHSXXXXXXXXXXXXXXGGVTLMDNMLHNTHTPIQYPSIDFLTFCQHCNKKLLEGKDIYIYR 1053
MLK + HKDQ + ++LD QS + + + I N L + +G K + DSD +RSP SPL+ RVLS + + +PRS+++ N KVGLSI+DSL D L P I+ P + + E PK P S VVFEIG++S E E G + RS S C + L+ S G S S SE ++ EDYTC+I+HG NPKTTHI+GD +LE H + +++ G V +PS +FL C CNKKL G DIY+YR
Sbjct: 1 MLKTRAMFPHKDQA-------MSLSLD---PQSDLVVGHTNNRPITNPLALSLLIGLNNKNKCISDSDFVRSPKSPLEFRVLSTMADSFFLRSPRSSLTA--HLNCCCGPAAKVGLSIVDSLGD---DRCLLPDIVF-GPALR--IKCSEVMDKHPKLL--FPVANKSKKIENERSGVVFEIGDNSSETEPVGLRNRSFSANDC--LRKTRVLSRSKLGQEGDFPGSGSDNAFS-------------------------------SEDDM-EDYTCIIAHGPNPKTTHIYGDRVLECHK-NELKGDEDNKEKFGSV---------------FPSDNFLGICNFCNKKLGGGDDIYMYR 288
BLAST of rna-TanjilR_13980 vs. DB:Swiss
Match: FLZ8_ARATH (FCS-Like Zinc finger 8 OS=Arabidopsis thaliana OX=3702 GN=FLZ8 PE=1 SV=1) HSP 1 Score: 63.5438 bits (153), Expect = 5.057e-10 Identity = 36/94 (38.30%), Postives = 47/94 (50.00%), Query Frame = 1
Query: 772 ASEIELSEDYTCVISHGSNPKTTHIFGDCILETHSXXXXXXXXXXXXXXGGVTLMDNMLHNTHTPIQYPSIDFLTFCQHCNKKLLEGKDIYIYR 1053
AS++ELSEDYTCV HG NP+T HIF +CI+E+ G V + N P FL+ C +C K L DI++YR
Sbjct: 164 ASDMELSEDYTCVTCHGPNPRTIHIFDNCIVESQP--------------GVVFFRSSDPVNESDSDYSPPDSFLSCCCNCKKSLGPRDDIFMYR 243 The following BLAST results are available for this feature:
BLAST of rna-TanjilR_13980 vs. DB:Swiss
Analysis Date: 2020-01-28 (BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot) Total hits: 3
InterPro
Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28
Sequences
The
following sequences are available for this feature:
mRNA sequence >rna-TanjilR_13980_La_Tanjil_v1.0 ID=rna-TanjilR_13980_La_Tanjil_v1.0; Name=rna-TanjilR_13980; organism=Lupinus angustifolius; type=mRNA; length=1405bpback to top protein sequence of rna-TanjilR_13980_La_Tanjil_v1.0 >rna-TanjilR_13980_La_Tanjil_v1.0 ID=rna-TanjilR_13980_La_Tanjil_v1.0; Name=rna-TanjilR_13980_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=399bpback to top mRNA from alignment at Chr_LG03-CM007363.1:22758128..22759532- Legend: polypeptideCDSexonmRNA Hold the cursor over a type above to highlight its positions in the sequence below.>rna-TanjilR_13980_La_Tanjil_v1.0 ID=rna-TanjilR_13980_La_Tanjil_v1.0; Name=rna-TanjilR_13980; organism=Lupinus angustifolius; type=mRNA; length=1405bp; location=Sequence derived from: Chr_LG03-CM007363.1:22758128..22759532- (Lupinus angustifoliusback to top Coding sequence (CDS) from alignment at Chr_LG03-CM007363.1:22758128..22759532- >rna-TanjilR_13980_La_Tanjil_v1.0 ID=rna-TanjilR_13980_La_Tanjil_v1.0; Name=rna-TanjilR_13980; organism=Lupinus angustifolius; type=CDS; length=1200bp; location=Sequence derived from: Chr_LG03-CM007363.1:22758128..22759532- (Lupinus angustifoliusback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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