rna-TanjilR_30716
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Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Homology
BLAST of rna-TanjilR_30716 vs. DB:Swiss
Match: EREL1_ARATH (PX domain-containing protein EREL1 OS=Arabidopsis thaliana OX=3702 GN=EREL1 PE=2 SV=1) HSP 1 Score: 192.2 bits (487), Expect = 4.774e-49 Identity = 119/236 (50.42%), Postives = 148/236 (62.71%), Query Frame = 3
Query: 3405 DYGSDTAYEPSELGTPTIGRDDNSEVGTDDLTLDEDMT--NPMEKLVKYGISNIDEGLFMSQTILDQLEGLPRHKVNARRDNYVTEKGKSNGNSYNASLLADNSLELFSELE---HAKAIDLAHILSNESFGSEGSSIRGSDMXXXXXXXXXXXXXXXXALVPRATYIMNHAELQFTGDAQVVLPLDQRNKLNRILLTMQRRLVTSKTDMEDLIVRLNQEIAAKDFLATKVYNLTG 4097
DYGSDTAYE SE+G+P++G+DD SE+GT+DLTLDED+T NP+EKLV + +SNIDEGL MS+TIL+QLE P+HKV +R N + K NGN+ LA+N L SE E H+ D S E F S + S + G V T ++ + E Q G AQ+VLPL+ RNKLNRILL RLV +KTDMEDLI RLNQEIA KD+L KV +L G
Sbjct: 208 DYGSDTAYETSEVGSPSVGQDDISEIGTEDLTLDEDLTLTNPIEKLVNFSMSNIDEGLSMSETILEQLEDFPKHKVRSRYVNNILGKDVYNGNASKGVFLANNGSRLLSEPEPSTHSVMHDRND--SAERFALHTGQTSTSGLLISSRDSHLDLRQGPG--VSLGTGLVCNPERQ--GSAQIVLPLELRNKLNRILLATNERLVNAKTDMEDLIARLNQEIAVKDYLNKKVNDLEG 437 HSP 2 Score: 87.8113 bits (216), Expect = 2.810e-27 Identity = 42/54 (77.78%), Postives = 47/54 (87.04%), Query Frame = 3
Query: 4293 QVKDLEVELEANKQKSKENLQQAILIERERFTQMQWDMEELRRKSLEMEMKLKS 4454
+V DLE ELE KQ+SKENL+QAI+ ERERF QMQWDMEELR+KS EMEMKLKS
Sbjct: 431 KVNDLEGELETTKQRSKENLEQAIMSERERFNQMQWDMEELRQKSYEMEMKLKS 484 HSP 3 Score: 59.3066 bits (142), Expect = 2.810e-27 Identity = 35/63 (55.56%), Postives = 43/63 (68.25%), Query Frame = 1
Query: 4549 QGGISSQNSITESLVQPKDVL-HNLNANKEQLEVLSKHYGELEAKSKADIKVLVKEVKSLRNT 4734
+ G S +S + K VL L+A K+QLE LS+ Y ELEAKSKAD+KVLVKEVKSLR +
Sbjct: 486 EDGSSHAEPTVQSTISEKHVLSKELDARKQQLEDLSRRYEELEAKSKADMKVLVKEVKSLRRS 548 HSP 4 Score: 68.9366 bits (167), Expect = 4.210e-10 Identity = 27/37 (72.97%), Postives = 33/37 (89.19%), Query Frame = 2
Query: 251 DGKDTAWPHNHGSGWSYCVTIPSWVFLPKSKNSDPVV 361
+G+DT WPH+ +GWSYCVTIPSW+ LPKS+NSDPVV
Sbjct: 32 NGRDTVWPHDPRTGWSYCVTIPSWIVLPKSRNSDPVV 68 HSP 5 Score: 66.6254 bits (161), Expect = 1.789e-9 Identity = 29/30 (96.67%), Postives = 29/30 (96.67%), Query Frame = 1
Query: 1 MQRRSPPKHRHDGTSPLPLGMDWSPAPRKW 90
MQRRSPPKHRHDGTSPLPLGMDWSP PRKW
Sbjct: 2 MQRRSPPKHRHDGTSPLPLGMDWSPPPRKW 31 HSP 6 Score: 64.6994 bits (156), Expect = 7.537e-9 Identity = 27/38 (71.05%), Postives = 32/38 (84.21%), Query Frame = 1
Query: 1660 FYRVQVGIQSPEGVTTLHGVLRRFNDFIKLFTDVSLLF 1773
FYRVQV +QSPEG+TT+ GVLRRFNDF+KL TD+ F
Sbjct: 69 FYRVQVSVQSPEGITTMRGVLRRFNDFLKLLTDLKRTF 106 HSP 7 Score: 61.2326 bits (147), Expect = 9.185e-8 Identity = 29/41 (70.73%), Postives = 34/41 (82.93%), Query Frame = 2
Query: 3032 CLLQRRCSLEEWMTKLLSDIDISRCAAVASFLGLEAAARSC 3154
L +RRCSLEEW+TKLLSDI+++R VASFL LEAAARS
Sbjct: 127 VLEERRCSLEEWITKLLSDIELARSVVVASFLELEAAARSA 167
BLAST of rna-TanjilR_30716 vs. DB:Swiss
Match: EREL2_ARATH (PX domain-containing protein EREL2 OS=Arabidopsis thaliana OX=3702 GN=EREL2 PE=3 SV=1) HSP 1 Score: 181.415 bits (459), Expect = 4.560e-46 Identity = 109/229 (47.60%), Postives = 145/229 (63.32%), Query Frame = 3
Query: 3405 DYGSDTAYEPSELGTPTIGRDDNSEVGTDDLTLDEDMTNPMEKLVKYGISNIDEGLFMSQTILDQLEGLPRHKVNARRDNYVTEKGKSNGNSYNASLLADNSLELFSELEHAKAIDLAHILSNESFGSEGSSIRGSDMXXXXXXXXXXXXXXXXALVPRATYIMNHAELQFTGDAQVVLPLDQRNKLNRILLTMQRRLVTSKTDMEDLIVRLNQEIAAKDFLATKVYNL 4091
DYGSDTAYE SELG+ ++G+DD SE T DLTLDED+TNP EKLVK+ +SNIDEGL MSQTI++QLE P+H+V+ N +TE NG + A+N L SE E + ++ LS ES ++G S+ + S S + +S + ++ L+ G+ ++VLPL +KLNRILLTM RL+ SKTDMEDLI RLNQE A K++L KV +L
Sbjct: 203 DYGSDTAYETSELGSASLGQDDVSETDTGDLTLDEDLTNPTEKLVKFSMSNIDEGLSMSQTIIEQLEDFPKHRVHLGYANDITETNSYNGKASKGVFRANNDLRCRSESETSHSVMHDRKLSLES--ADGVSLLAGETSTSSILSSIVHSQLD------VNHDISVGNLEIPGNGRIVLPLKMHSKLNRILLTMNERLLNSKTDMEDLIARLNQETAVKEYLNRKVDDL 423 HSP 2 Score: 80.4925 bits (197), Expect = 9.801e-26 Identity = 36/55 (65.45%), Postives = 48/55 (87.27%), Query Frame = 3
Query: 4293 QVKDLEVELEANKQKSKENLQQAILIERERFTQMQWDMEELRRKSLEMEMKLKSE 4457
+V DLEVELE KQ++KENL+QA++ ER+ T+MQWDMEELR+K+ EME+KLKS+
Sbjct: 419 KVDDLEVELETTKQRNKENLEQALMTERQSVTKMQWDMEELRQKTFEMELKLKSK 473 HSP 3 Score: 61.2326 bits (147), Expect = 9.801e-26 Identity = 32/61 (52.46%), Postives = 44/61 (72.13%), Query Frame = 1
Query: 4552 GGISSQNSITESLVQPKDVLHNLNANKEQLEVLSKHYGELEAKSKADIKVLVKEVKSLRNT 4734
G S+ S ++ + ++L ++A K+QLE LS+ Y ELEAKSKADIKVLV+EVKSLR +
Sbjct: 476 GSSDSKTSGNSTISESHELLQEMDATKQQLEDLSRRYVELEAKSKADIKVLVREVKSLRRS 536 HSP 4 Score: 66.6254 bits (161), Expect = 1.909e-9 Identity = 26/37 (70.27%), Postives = 31/37 (83.78%), Query Frame = 2
Query: 251 DGKDTAWPHNHGSGWSYCVTIPSWVFLPKSKNSDPVV 361
+G+DT WPH+ +GWSYCVTIPSW L KSKNSDP+V
Sbjct: 31 NGRDTIWPHDFRTGWSYCVTIPSWTLLSKSKNSDPIV 67 HSP 5 Score: 63.1586 bits (152), Expect = 2.429e-8 Identity = 27/30 (90.00%), Postives = 27/30 (90.00%), Query Frame = 1
Query: 1 MQRRSPPKHRHDGTSPLPLGMDWSPAPRKW 90
MQRRSPPKHRHDG SPLPLGMDWSP PR W
Sbjct: 1 MQRRSPPKHRHDGASPLPLGMDWSPPPRNW 30 HSP 6 Score: 62.3882 bits (150), Expect = 3.658e-8 Identity = 25/38 (65.79%), Postives = 31/38 (81.58%), Query Frame = 1
Query: 1660 FYRVQVGIQSPEGVTTLHGVLRRFNDFIKLFTDVSLLF 1773
FYRVQV +QSPEGV+T+ G+LRRFNDF+KL D+ F
Sbjct: 68 FYRVQVSVQSPEGVSTMRGILRRFNDFVKLLADLKRAF 105 HSP 7 Score: 59.6918 bits (143), Expect = 2.288e-7 Identity = 28/40 (70.00%), Postives = 33/40 (82.50%), Query Frame = 2
Query: 3035 LLQRRCSLEEWMTKLLSDIDISRCAAVASFLGLEAAARSC 3154
L +RRCSLE+WMTKLLSDI+++R VASFL LEA ARS
Sbjct: 127 LEERRCSLEDWMTKLLSDIELARSVVVASFLELEATARSA 166
BLAST of rna-TanjilR_30716 vs. DB:Swiss
Match: EREX_ARATH (PX domain-containing protein EREX OS=Arabidopsis thaliana OX=3702 GN=EREX PE=1 SV=1) HSP 1 Score: 66.6254 bits (161), Expect = 2.370e-9 Identity = 30/56 (53.57%), Postives = 44/56 (78.57%), Query Frame = 3
Query: 4287 SVQVKDLEVELEANKQKSKENLQQAILIERERFTQMQWDMEELRRKSLEMEMKLKS 4454
S +V+DLEVELE ++ K+ +++ +L E+ERFTQ+QWDMEELR++ +EME L S
Sbjct: 459 STKVRDLEVELETTRESCKQGMEKTVLDEKERFTQIQWDMEELRKQCMEMESFLNS 514 HSP 2 Score: 65.4698 bits (158), Expect = 4.881e-9 Identity = 26/37 (70.27%), Postives = 31/37 (83.78%), Query Frame = 2
Query: 251 DGKDTAWPHNHGSGWSYCVTIPSWVFLPKSKNSDPVV 361
+G+DT WPH+H +GWSYCVT+PSWV LPKS SDP V
Sbjct: 91 EGRDTVWPHDHRTGWSYCVTVPSWVDLPKSSVSDPAV 127 HSP 3 Score: 62.3882 bits (150), Expect = 4.050e-8 Identity = 31/78 (39.74%), Postives = 55/78 (70.51%), Query Frame = 2
Query: 5297 KLLQHEREKRVQAETAWRNLVPKCRLLFNQLQECNVNLSIEDEDRKILNSSSLTDTFNQLALSDDQIDILLEEVQVIS 5530
+++Q E+++ A+ A + L+ +C +L N+LQECNV IE+E + I++SSSL++ LA SD++I +L+ E Q++S
Sbjct: 598 RIVQREKDREETAKNADKKLLHECDVLQNRLQECNVKFDIEEEGKLIMDSSSLSEAIELLATSDNRIGLLIAETQLLS 675 HSP 4 Score: 61.2326 bits (147), Expect = 9.965e-8 Identity = 30/45 (66.67%), Postives = 37/45 (82.22%), Query Frame = 2
Query: 3020 LRHLCLLQ-RRCSLEEWMTKLLSDIDISRCAAVASFLGLEAAARS 3151
+R+ LL+ RRCSLE+WM +LLSDIDISR A +A+FL LEAA RS
Sbjct: 181 MRNQTLLEERRCSLEDWMNRLLSDIDISRSALIATFLELEAAVRS 225 HSP 5 Score: 57.7658 bits (138), Expect = 9.869e-7 Identity = 28/56 (50.00%), Postives = 42/56 (75.00%), Query Frame = 3
Query: 3924 DAQVVLPLDQRNKLNRILLTMQRRLVTSKTDMEDLIVRLNQEIAAKDFLATKVYNL 4091
D +V ++R+KL R++ T+++RL T+K D EDLI RLNQE+A + FL+TKV +L
Sbjct: 410 DLAIVFQSEERHKLKRVIDTLKQRLETAKADTEDLISRLNQELAVRQFLSTKVRDL 465 The following BLAST results are available for this feature:
BLAST of rna-TanjilR_30716 vs. DB:Swiss
Analysis Date: 2020-01-28 (BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot) Total hits: 3
InterPro
Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28
Sequences
The
following sequences are available for this feature:
mRNA sequence >rna-TanjilR_30716_La_Tanjil_v1.0 ID=rna-TanjilR_30716_La_Tanjil_v1.0; Name=rna-TanjilR_30716; organism=Lupinus angustifolius; type=mRNA; length=5870bpback to top protein sequence of rna-TanjilR_30716_La_Tanjil_v1.0 >rna-TanjilR_30716_La_Tanjil_v1.0 ID=rna-TanjilR_30716_La_Tanjil_v1.0; Name=rna-TanjilR_30716_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=709bpback to top mRNA from alignment at Chr_LG03-CM007363.1:23256202..23262071- Legend: polypeptideCDSexonmRNA Hold the cursor over a type above to highlight its positions in the sequence below.>rna-TanjilR_30716_La_Tanjil_v1.0 ID=rna-TanjilR_30716_La_Tanjil_v1.0; Name=rna-TanjilR_30716; organism=Lupinus angustifolius; type=mRNA; length=5870bp; location=Sequence derived from: Chr_LG03-CM007363.1:23256202..23262071- (Lupinus angustifoliusback to top Coding sequence (CDS) from alignment at Chr_LG03-CM007363.1:23256202..23262071- >rna-TanjilR_30716_La_Tanjil_v1.0 ID=rna-TanjilR_30716_La_Tanjil_v1.0; Name=rna-TanjilR_30716; organism=Lupinus angustifolius; type=CDS; length=2130bp; location=Sequence derived from: Chr_LG03-CM007363.1:23256202..23262071- (Lupinus angustifoliusback to top |