Homology
BLAST of rna-TanjilR_30696 vs. DB:Swiss
Match:
SDF2_ARATH (Stromal cell-derived factor 2-like protein OS=Arabidopsis thaliana OX=3702 GN=SDF2 PE=1 SV=1)
HSP 1 Score: 86.6557 bits (213), Expect = 7.731e-20
Identity = 38/45 (84.44%), Postives = 42/45 (93.33%), Query Frame = 1
Query: 2482 RLTIEGSGKTWKQDQKIRLQHVDTGGYLHSHDKKYTRIAGGQQEV 2616
+L IEGSGKTWKQDQ++RLQH+DT GYLHSHDKKY RIAGGQQEV
Sbjct: 147 KLIIEGSGKTWKQDQRVRLQHIDTSGYLHSHDKKYQRIAGGQQEV 191
HSP 2 Score: 34.2686 bits (77), Expect = 7.731e-20
Identity = 14/17 (82.35%), Postives = 15/17 (88.24%), Query Frame = 2
Query: 2351 VSCFGGETESDTGDHWK 2401
VSCFG +T SDTGDHWK
Sbjct: 131 VSCFGDDTNSDTGDHWK 147
HSP 3 Score: 90.8929 bits (224), Expect = 3.329e-19
Identity = 41/49 (83.67%), Postives = 45/49 (91.84%), Query Frame = 2
Query: 233 QITYGSVLKLMHEKTKVRLHSHEVPYGSGSGQQSVTGFPSVDDSNSYWV 379
+ITYGS +KLMHEKTK RLHSH+VPYGSGSGQQSVTGFP V DSNSYW+
Sbjct: 36 EITYGSAIKLMHEKTKFRLHSHDVPYGSGSGQQSVTGFPGVVDSNSYWI 84
HSP 4 Score: 78.5666 bits (192), Expect = 5.325e-15
Identity = 37/55 (67.27%), Postives = 43/55 (78.18%), Query Frame = 1
Query: 997 FQVVKPELESSAKQGDTIKSGTLIRLQHMRTRKWLHSHLHASPISHNLEVFRDCF 1161
+ +VKP ++ KQGD +KSG IRLQHM+TRKWLHSHLHASPIS NLEV CF
Sbjct: 82 YWIVKPVPGTTEKQGDAVKSGATIRLQHMKTRKWLHSHLHASPISGNLEV--SCF 134
BLAST of rna-TanjilR_30696 vs. DB:Swiss
Match:
SDF2_MOUSE (Stromal cell-derived factor 2 OS=Mus musculus OX=10090 GN=Sdf2 PE=1 SV=1)
HSP 1 Score: 72.4034 bits (176), Expect = 7.327e-13
Identity = 34/47 (72.34%), Postives = 40/47 (85.11%), Query Frame = 2
Query: 236 ITYGSVLKLMHEKTKVRLHSHEVPYGSGSGQQSVTGFPSVDDSNSYW 376
+T GSV+KL++ + VRLHSH+V YGSGSGQQSVTG SVDDSNSYW
Sbjct: 24 VTCGSVVKLLNTRHNVRLHSHDVRYGSGSGQQSVTGVTSVDDSNSYW 70
BLAST of rna-TanjilR_30696 vs. DB:Swiss
Match:
SDF2_BOVIN (Stromal cell-derived factor 2 OS=Bos taurus OX=9913 GN=SDF2 PE=2 SV=1)
HSP 1 Score: 72.0182 bits (175), Expect = 8.211e-13
Identity = 34/47 (72.34%), Postives = 40/47 (85.11%), Query Frame = 2
Query: 236 ITYGSVLKLMHEKTKVRLHSHEVPYGSGSGQQSVTGFPSVDDSNSYW 376
+T GSV+KL++ + VRLHSH+V YGSGSGQQSVTG SVDDSNSYW
Sbjct: 24 VTCGSVVKLLNTRHNVRLHSHDVRYGSGSGQQSVTGVTSVDDSNSYW 70
BLAST of rna-TanjilR_30696 vs. DB:Swiss
Match:
SDF2_HUMAN (Stromal cell-derived factor 2 OS=Homo sapiens OX=9606 GN=SDF2 PE=1 SV=2)
HSP 1 Score: 72.0182 bits (175), Expect = 9.115e-13
Identity = 34/47 (72.34%), Postives = 40/47 (85.11%), Query Frame = 2
Query: 236 ITYGSVLKLMHEKTKVRLHSHEVPYGSGSGQQSVTGFPSVDDSNSYW 376
+T GSV+KL++ + VRLHSH+V YGSGSGQQSVTG SVDDSNSYW
Sbjct: 24 VTCGSVVKLLNTRHNVRLHSHDVRYGSGSGQQSVTGVTSVDDSNSYW 70
BLAST of rna-TanjilR_30696 vs. DB:Swiss
Match:
SDF2L_MOUSE (Stromal cell-derived factor 2-like protein 1 OS=Mus musculus OX=10090 GN=Sdf2l1 PE=1 SV=2)
HSP 1 Score: 69.3218 bits (168), Expect = 1.076e-11
Identity = 32/47 (68.09%), Postives = 38/47 (80.85%), Query Frame = 2
Query: 236 ITYGSVLKLMHEKTKVRLHSHEVPYGSGSGQQSVTGFPSVDDSNSYW 376
+T GSVLKL++ KVRLHSH++ YGSGSGQQSVTG DD+NSYW
Sbjct: 36 VTCGSVLKLLNTHHKVRLHSHDIKYGSGSGQQSVTGVEESDDANSYW 82
BLAST of rna-TanjilR_30696 vs. DB:Swiss
Match:
SDF2L_BOVIN (Stromal cell-derived factor 2-like protein 1 OS=Bos taurus OX=9913 GN=SDF2L1 PE=2 SV=1)
HSP 1 Score: 68.9366 bits (167), Expect = 1.228e-11
Identity = 31/47 (65.96%), Postives = 39/47 (82.98%), Query Frame = 2
Query: 236 ITYGSVLKLMHEKTKVRLHSHEVPYGSGSGQQSVTGFPSVDDSNSYW 376
+T GSVLKL + + +VRLHSH++ YGSGSGQQSVTG + DD+NSYW
Sbjct: 36 VTCGSVLKLFNTQHRVRLHSHDIKYGSGSGQQSVTGVEASDDANSYW 82
BLAST of rna-TanjilR_30696 vs. DB:Swiss
Match:
SDF2L_HUMAN (Stromal cell-derived factor 2-like protein 1 OS=Homo sapiens OX=9606 GN=SDF2L1 PE=1 SV=2)
HSP 1 Score: 68.9366 bits (167), Expect = 1.415e-11
Identity = 31/47 (65.96%), Postives = 39/47 (82.98%), Query Frame = 2
Query: 236 ITYGSVLKLMHEKTKVRLHSHEVPYGSGSGQQSVTGFPSVDDSNSYW 376
+T GSVLKL++ +VRLHSH++ YGSGSGQQSVTG + DD+NSYW
Sbjct: 36 VTCGSVLKLLNTHHRVRLHSHDIKYGSGSGQQSVTGVEASDDANSYW 82
The following BLAST results are available for this feature:
BLAST of rna-TanjilR_30696 vs. DB:Swiss
Analysis Date: 2020-01-28 (
BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot)
Total hits: 7
Match Name | E-value | Identity | Description | |
SDF2_ARATH | 7.731e-20 | 84.44 | Stromal cell-derived factor 2-like protein OS=Arab... | [more] |
SDF2_MOUSE | 7.327e-13 | 72.34 | Stromal cell-derived factor 2 OS=Mus musculus OX=1... | [more] |
SDF2_BOVIN | 8.211e-13 | 72.34 | Stromal cell-derived factor 2 OS=Bos taurus OX=991... | [more] |
SDF2_HUMAN | 9.115e-13 | 72.34 | Stromal cell-derived factor 2 OS=Homo sapiens OX=9... | [more] |
SDF2L_MOUSE | 1.076e-11 | 68.09 | Stromal cell-derived factor 2-like protein 1 OS=Mu... | [more] |
SDF2L_BOVIN | 1.228e-11 | 65.96 | Stromal cell-derived factor 2-like protein 1 OS=Bo... | [more] |
SDF2L_HUMAN | 1.415e-11 | 65.96 | Stromal cell-derived factor 2-like protein 1 OS=Ho... | [more] |
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Sequences
The
following sequences are available for this feature:
mRNA sequence
>rna-TanjilR_30696_La_Tanjil_v1.0 ID=rna-TanjilR_30696_La_Tanjil_v1.0; Name=rna-TanjilR_30696; organism=Lupinus angustifolius; type=mRNA; length=3015bp
ATGGCTATCGCTTTCTTCTCTCTCGCACTCTTCCTTTTCCTCTCTCTTGA
TTCTGATTTACCTTATTCTCCTACTTCTTCTGTATCTGCTGCTTCTTCCG
AAGGCGTCGAGGTTTTTATTTAATTTTTAATTTTTGTCATTTTTGTTGCA
ATTAGGGTTATGGATCTTATAATTTATGTTTTGGTGGTGATTGATAGTTT
GATTTGTGTTTGATCTGGTGCGGTTATAGGTGCAGATTACTTATGGATCG
GTGTTGAAGCTTATGCATGAGAAGACGAAAGTTCGGTTGCATTCTCATGA
GGTGCCATATGGTTCTGGAAGTGGACAACAATCGGTTACTGGTTTTCCCA
GTGTTGATGATTCCAATAGTTACTGGGTACATTCCTTATATCTACGCTTT
AAGTTATAATTGTATTGGCTTGAAATTCTGGATATTAGAAATTTGCTTTG
GACTTTGATTAATCCGAGTCCATTTTGAAAGAATCATTTAAGGTGCATGT
TTTCTCAGGCTATAATTTTTTCATTCACAAGACTAGAACATGAGATTTTG
CTAATGTGAAACCTAGCTCTTTGTTACTGGAACCAACAGTTCTCAATTTT
GGCTTTTGTTCTTATAAGTAATTGGCTGCTAATATCTTATTTAAATATTT
TCTATAAATAGTTTTTTTTAAGAAACCTATGTCGATGTTTTTCCAGTGTC
ATGAGAGTCAATTTTGTTGTATTATGCATTTAAACCTATGTCTAAGTGAA
ATGATAGTGACGTTTATTTAAGTGCACTTGATGCCTCTCTTGTTGAAGGA
GGTTATTGTAATTTCAATCATCATGTAAGTATAACGATAATATAATCTTG
GAGGAAATTGGTAAAGCAAGAACAATGGGTGATTAAGTTATCCCCAAGGA
AGGTCATTATGATTCCCTATTTTCAGCAAATAAATTACTACTTGGCATTT
TATGTTTGTATTGAGTATTGAACTTGACTTGAGATATGTGTTCTTTTTTC
AGGTTGTTAAACCTGAGCTAGAATCTTCTGCTAAACAAGGTGACACCATT
AAAAGTGGAACACTCATTAGACTGCAGCATATGAGGACGAGGAAGTGGCT
GCATAGCCATTTGCATGCATCCCCAATATCACACAATCTTGAGGTATTTC
GTGATTGTTTTTTTTGGGTATTCCAACATCATTTTCTTTTGAGAAATGTT
TTTAGACAACATTTGATTTACGTGTGTAATAACATTTGATTTACGTGAAT
GTGATACCAAGGTAGACTAGATAAATGTATGTGAATATGATTTGTTTTCT
CAAAATTTGTCTAAATAGCAAAGCTGCTTGCTTTTTTAGTCCTGGAGTCT
CTATTATGTATTGTGGGAGTCCTTTTCATCTTAATTTAATTAAAAACCTC
TTATCATTGAACAAACGTATCCCCTATCATGAAGTTATCACTCATCTGTG
TTACTTGAACGTACTCTTATGCTCTACACTCTTGCCGAGATATGTTCCTG
AAACAGTCCAACTTTGTTTTTTAAAGCTTGCCACTTGATAGACATGCAAA
TTGGTTGAACAAAATTTTGCACTTGTAATACTGTATACTCTTAAGCAACT
CATCTTAGGCCTATTAATTGTGATAGACATTCTATGAATTTTTATTTGTG
CTCTGCATTGCATATTACTTGTTAGCCATTTACCACAGATAATGAAAATG
CCCCGTTTTGATATATCTCGACGTTTTGCCTAATAATCAAAAGTTCTCAC
CCTCGCTAATTTAATGCTTTAATGTACCATGTAGCAAAAGTTCTATGTTC
TCTTATATAACATAAAGACTATAATATTTTAAATCTTCTCTATATTCCCA
CTAGGTTTTATTAGCTTTTGGTCTCAACTAACATATATCTTCAAATGTGT
CCTATGGATTGAGCCTAATCTTATCCTCCACCTTTAGCAAAATGGACTAC
TGTAACACTTTGAGGCATCTCTTTTTCTCTTTTATGATATAAATCAAAAT
AAAGACTATCATCTCAGTGGCATCCATTGATCTTTCATCTATGTTACTGA
CCATATGGTTCGTTAGATCTTGCATGTTGTACTATAAATCAACACTTGTG
CAATCCACCACCACTTCTGAGTTATTTCGTCATGTCTATATCTTCCCTCT
AAATTCTAATAGACTGGTGCAAGAAAATTTTGACCATGCTACATTTTTGA
ACTATGGAGAACATAGATTGAAACATGCATTTTTGTAATCCTTTATATCT
TTTTTATTGTCCTTTGTATTTGAATGAGCTCATGATTAAAGTTAGAATTT
TGATTCAAGTATAATATTTTCCCGAGTTTGTCAATTTGAATTGAATATAG
GTGAGCTGCTTTGGAGGAGAGACCGAGTCTGACACTGGGGACCATTGGAA
GTAAGATATAATAAAACAATAAATAATGATATTTCCAACTCAATATTCTG
TAAGGTGATTTATATTGGTTTTATTTTCACCAGGCTTACAATAGAAGGAA
GCGGGAAGACTTGGAAGCAAGATCAAAAGATTCGGCTTCAACATGTTGAC
ACTGGAGGCTATCTGCACAGTCATGATAAGAAATACACTCGAATTGCTGG
AGGGCAGCAGGAGGTAAGAAATGACTTGGAAACCGAAATTTTGTATTCTC
TTGTAATCAATTATATATTGAAGAACTATACGAGTGCAAATAAATTCTAT
TCTCTGATTCTTTTTTGGTATTTGCTGCTTTTGCTTTTTCATATATGTAA
GTATTATATACTTTAGAGTGCAGCAACAAAAGAAGTATTCTGCAAATGAT
TTAAGCACGTATCTATAATTTTGTTATGTCCAAGGAATAGTGACGGTGGG
ATTTACAGTCCATTTTATGTCATATGTAACTAAAATGTTGGAAGTGGATC
ATCAATTTTGTCATTTGCTGTGTTTTATTAGGTTTGTGGTGTTCGAGAAA
AGCGTGCCGAGAATGTCTGGTTGGCAGCAGAAGGCGTCTACCTTCCAATT
ACTGAAAGCAAATGA
back to topprotein sequence of rna-TanjilR_30696_La_Tanjil_v1.0
>rna-TanjilR_30696_La_Tanjil_v1.0 ID=rna-TanjilR_30696_La_Tanjil_v1.0; Name=rna-TanjilR_30696_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=220bp
MAIAFFSLALFLFLSLDSDLPYSPTSSVSAASSEGVEVQITYGSVLKLMH
EKTKVRLHSHEVPYGSGSGQQSVTGFPSVDDSNSYWVVKPELESSAKQGD
TIKSGTLIRLQHMRTRKWLHSHLHASPISHNLEVSCFGGETESDTGDHWK
LTIEGSGKTWKQDQKIRLQHVDTGGYLHSHDKKYTRIAGGQQEVCGVREK
RAENVWLAAEGVYLPITESK
back to topmRNA from alignment at Chr_LG03-CM007363.1:23429911..23432925-
Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna-TanjilR_30696_La_Tanjil_v1.0 ID=rna-TanjilR_30696_La_Tanjil_v1.0; Name=rna-TanjilR_30696; organism=Lupinus angustifolius; type=mRNA; length=3015bp; location=Sequence derived from: Chr_LG03-CM007363.1:23429911..23432925- (Lupinus angustifolius
ATGGCTATCGCTTTCTTCTCTCTCGCACTCTTCCTTTTCCTCTCTCTTGA
TTCTGATTTACCTTATTCTCCTACTTCTTCTGTATCTGCTGCTTCTTCCG
AAGGCGTCGAGGTTTTTATTTAATTTTTAATTTTTGTCATTTTTGTTGCA
ATTAGGGTTATGGATCTTATAATTTATGTTTTGGTGGTGATTGATAGTTT
GATTTGTGTTTGATCTGGTGCGGTTATAGGTGCAGATTACTTATGGATCG
GTGTTGAAGCTTATGCATGAGAAGACGAAAGTTCGGTTGCATTCTCATGA
GGTGCCATATGGTTCTGGAAGTGGACAACAATCGGTTACTGGTTTTCCCA
GTGTTGATGATTCCAATAGTTACTGGGTACATTCCTTATATCTACGCTTT
AAGTTATAATTGTATTGGCTTGAAATTCTGGATATTAGAAATTTGCTTTG
GACTTTGATTAATCCGAGTCCATTTTGAAAGAATCATTTAAGGTGCATGT
TTTCTCAGGCTATAATTTTTTCATTCACAAGACTAGAACATGAGATTTTG
CTAATGTGAAACCTAGCTCTTTGTTACTGGAACCAACAGTTCTCAATTTT
GGCTTTTGTTCTTATAAGTAATTGGCTGCTAATATCTTATTTAAATATTT
TCTATAAATAGTTTTTTTTAAGAAACCTATGTCGATGTTTTTCCAGTGTC
ATGAGAGTCAATTTTGTTGTATTATGCATTTAAACCTATGTCTAAGTGAA
ATGATAGTGACGTTTATTTAAGTGCACTTGATGCCTCTCTTGTTGAAGGA
GGTTATTGTAATTTCAATCATCATGTAAGTATAACGATAATATAATCTTG
GAGGAAATTGGTAAAGCAAGAACAATGGGTGATTAAGTTATCCCCAAGGA
AGGTCATTATGATTCCCTATTTTCAGCAAATAAATTACTACTTGGCATTT
TATGTTTGTATTGAGTATTGAACTTGACTTGAGATATGTGTTCTTTTTTC
AGGTTGTTAAACCTGAGCTAGAATCTTCTGCTAAACAAGGTGACACCATT
AAAAGTGGAACACTCATTAGACTGCAGCATATGAGGACGAGGAAGTGGCT
GCATAGCCATTTGCATGCATCCCCAATATCACACAATCTTGAGGTATTTC
GTGATTGTTTTTTTTGGGTATTCCAACATCATTTTCTTTTGAGAAATGTT
TTTAGACAACATTTGATTTACGTGTGTAATAACATTTGATTTACGTGAAT
GTGATACCAAGGTAGACTAGATAAATGTATGTGAATATGATTTGTTTTCT
CAAAATTTGTCTAAATAGCAAAGCTGCTTGCTTTTTTAGTCCTGGAGTCT
CTATTATGTATTGTGGGAGTCCTTTTCATCTTAATTTAATTAAAAACCTC
TTATCATTGAACAAACGTATCCCCTATCATGAAGTTATCACTCATCTGTG
TTACTTGAACGTACTCTTATGCTCTACACTCTTGCCGAGATATGTTCCTG
AAACAGTCCAACTTTGTTTTTTAAAGCTTGCCACTTGATAGACATGCAAA
TTGGTTGAACAAAATTTTGCACTTGTAATACTGTATACTCTTAAGCAACT
CATCTTAGGCCTATTAATTGTGATAGACATTCTATGAATTTTTATTTGTG
CTCTGCATTGCATATTACTTGTTAGCCATTTACCACAGATAATGAAAATG
CCCCGTTTTGATATATCTCGACGTTTTGCCTAATAATCAAAAGTTCTCAC
CCTCGCTAATTTAATGCTTTAATGTACCATGTAGCAAAAGTTCTATGTTC
TCTTATATAACATAAAGACTATAATATTTTAAATCTTCTCTATATTCCCA
CTAGGTTTTATTAGCTTTTGGTCTCAACTAACATATATCTTCAAATGTGT
CCTATGGATTGAGCCTAATCTTATCCTCCACCTTTAGCAAAATGGACTAC
TGTAACACTTTGAGGCATCTCTTTTTCTCTTTTATGATATAAATCAAAAT
AAAGACTATCATCTCAGTGGCATCCATTGATCTTTCATCTATGTTACTGA
CCATATGGTTCGTTAGATCTTGCATGTTGTACTATAAATCAACACTTGTG
CAATCCACCACCACTTCTGAGTTATTTCGTCATGTCTATATCTTCCCTCT
AAATTCTAATAGACTGGTGCAAGAAAATTTTGACCATGCTACATTTTTGA
ACTATGGAGAACATAGATTGAAACATGCATTTTTGTAATCCTTTATATCT
TTTTTATTGTCCTTTGTATTTGAATGAGCTCATGATTAAAGTTAGAATTT
TGATTCAAGTATAATATTTTCCCGAGTTTGTCAATTTGAATTGAATATAG
GTGAGCTGCTTTGGAGGAGAGACCGAGTCTGACACTGGGGACCATTGGAA
GTAAGATATAATAAAACAATAAATAATGATATTTCCAACTCAATATTCTG
TAAGGTGATTTATATTGGTTTTATTTTCACCAGGCTTACAATAGAAGGAA
GCGGGAAGACTTGGAAGCAAGATCAAAAGATTCGGCTTCAACATGTTGAC
ACTGGAGGCTATCTGCACAGTCATGATAAGAAATACACTCGAATTGCTGG
AGGGCAGCAGGAGGTAAGAAATGACTTGGAAACCGAAATTTTGTATTCTC
TTGTAATCAATTATATATTGAAGAACTATACGAGTGCAAATAAATTCTAT
TCTCTGATTCTTTTTTGGTATTTGCTGCTTTTGCTTTTTCATATATGTAA
GTATTATATACTTTAGAGTGCAGCAACAAAAGAAGTATTCTGCAAATGAT
TTAAGCACGTATCTATAATTTTGTTATGTCCAAGGAATAGTGACGGTGGG
ATTTACAGTCCATTTTATGTCATATGTAACTAAAATGTTGGAAGTGGATC
ATCAATTTTGTCATTTGCTGTGTTTTATTAGGTTTGTGGTGTTCGAGAAA
AGCGTGCCGAGAATGTCTGGTTGGCAGCAGAAGGCGTCTACCTTCCAATT
ACTGAAAGCAAATGA
back to topCoding sequence (CDS) from alignment at Chr_LG03-CM007363.1:23429911..23432925-
>rna-TanjilR_30696_La_Tanjil_v1.0 ID=rna-TanjilR_30696_La_Tanjil_v1.0; Name=rna-TanjilR_30696; organism=Lupinus angustifolius; type=CDS; length=663bp; location=Sequence derived from: Chr_LG03-CM007363.1:23429911..23432925- (Lupinus angustifolius
ATGGCTATCGCTTTCTTCTCTCTCGCACTCTTCCTTTTCCTCTCTCTTGA
TTCTGATTTACCTTATTCTCCTACTTCTTCTGTATCTGCTGCTTCTTCCG
AAGGCGTCGAGGTGCAGATTACTTATGGATCGGTGTTGAAGCTTATGCAT
GAGAAGACGAAAGTTCGGTTGCATTCTCATGAGGTGCCATATGGTTCTGG
AAGTGGACAACAATCGGTTACTGGTTTTCCCAGTGTTGATGATTCCAATA
GTTACTGGGTTGTTAAACCTGAGCTAGAATCTTCTGCTAAACAAGGTGAC
ACCATTAAAAGTGGAACACTCATTAGACTGCAGCATATGAGGACGAGGAA
GTGGCTGCATAGCCATTTGCATGCATCCCCAATATCACACAATCTTGAGG
TGAGCTGCTTTGGAGGAGAGACCGAGTCTGACACTGGGGACCATTGGAAG
CTTACAATAGAAGGAAGCGGGAAGACTTGGAAGCAAGATCAAAAGATTCG
GCTTCAACATGTTGACACTGGAGGCTATCTGCACAGTCATGATAAGAAAT
ACACTCGAATTGCTGGAGGGCAGCAGGAGGTTTGTGGTGTTCGAGAAAAG
CGTGCCGAGAATGTCTGGTTGGCAGCAGAAGGCGTCTACCTTCCAATTAC
TGAAAGCAAATGA
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