rna-TanjilR_30696
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Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Homology
BLAST of rna-TanjilR_30696 vs. DB:Swiss
Match: SDF2_ARATH (Stromal cell-derived factor 2-like protein OS=Arabidopsis thaliana OX=3702 GN=SDF2 PE=1 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 7.731e-20 Identity = 38/45 (84.44%), Postives = 42/45 (93.33%), Query Frame = 1
Query: 2482 RLTIEGSGKTWKQDQKIRLQHVDTGGYLHSHDKKYTRIAGGQQEV 2616
+L IEGSGKTWKQDQ++RLQH+DT GYLHSHDKKY RIAGGQQEV
Sbjct: 147 KLIIEGSGKTWKQDQRVRLQHIDTSGYLHSHDKKYQRIAGGQQEV 191 HSP 2 Score: 34.2686 bits (77), Expect = 7.731e-20 Identity = 14/17 (82.35%), Postives = 15/17 (88.24%), Query Frame = 2
Query: 2351 VSCFGGETESDTGDHWK 2401
VSCFG +T SDTGDHWK
Sbjct: 131 VSCFGDDTNSDTGDHWK 147 HSP 3 Score: 90.8929 bits (224), Expect = 3.329e-19 Identity = 41/49 (83.67%), Postives = 45/49 (91.84%), Query Frame = 2
Query: 233 QITYGSVLKLMHEKTKVRLHSHEVPYGSGSGQQSVTGFPSVDDSNSYWV 379
+ITYGS +KLMHEKTK RLHSH+VPYGSGSGQQSVTGFP V DSNSYW+
Sbjct: 36 EITYGSAIKLMHEKTKFRLHSHDVPYGSGSGQQSVTGFPGVVDSNSYWI 84 HSP 4 Score: 78.5666 bits (192), Expect = 5.325e-15 Identity = 37/55 (67.27%), Postives = 43/55 (78.18%), Query Frame = 1
Query: 997 FQVVKPELESSAKQGDTIKSGTLIRLQHMRTRKWLHSHLHASPISHNLEVFRDCF 1161
+ +VKP ++ KQGD +KSG IRLQHM+TRKWLHSHLHASPIS NLEV CF
Sbjct: 82 YWIVKPVPGTTEKQGDAVKSGATIRLQHMKTRKWLHSHLHASPISGNLEV--SCF 134
BLAST of rna-TanjilR_30696 vs. DB:Swiss
Match: SDF2_MOUSE (Stromal cell-derived factor 2 OS=Mus musculus OX=10090 GN=Sdf2 PE=1 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 7.327e-13 Identity = 34/47 (72.34%), Postives = 40/47 (85.11%), Query Frame = 2
Query: 236 ITYGSVLKLMHEKTKVRLHSHEVPYGSGSGQQSVTGFPSVDDSNSYW 376
+T GSV+KL++ + VRLHSH+V YGSGSGQQSVTG SVDDSNSYW
Sbjct: 24 VTCGSVVKLLNTRHNVRLHSHDVRYGSGSGQQSVTGVTSVDDSNSYW 70
BLAST of rna-TanjilR_30696 vs. DB:Swiss
Match: SDF2_BOVIN (Stromal cell-derived factor 2 OS=Bos taurus OX=9913 GN=SDF2 PE=2 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 8.211e-13 Identity = 34/47 (72.34%), Postives = 40/47 (85.11%), Query Frame = 2
Query: 236 ITYGSVLKLMHEKTKVRLHSHEVPYGSGSGQQSVTGFPSVDDSNSYW 376
+T GSV+KL++ + VRLHSH+V YGSGSGQQSVTG SVDDSNSYW
Sbjct: 24 VTCGSVVKLLNTRHNVRLHSHDVRYGSGSGQQSVTGVTSVDDSNSYW 70
BLAST of rna-TanjilR_30696 vs. DB:Swiss
Match: SDF2_HUMAN (Stromal cell-derived factor 2 OS=Homo sapiens OX=9606 GN=SDF2 PE=1 SV=2) HSP 1 Score: 72.0182 bits (175), Expect = 9.115e-13 Identity = 34/47 (72.34%), Postives = 40/47 (85.11%), Query Frame = 2
Query: 236 ITYGSVLKLMHEKTKVRLHSHEVPYGSGSGQQSVTGFPSVDDSNSYW 376
+T GSV+KL++ + VRLHSH+V YGSGSGQQSVTG SVDDSNSYW
Sbjct: 24 VTCGSVVKLLNTRHNVRLHSHDVRYGSGSGQQSVTGVTSVDDSNSYW 70
BLAST of rna-TanjilR_30696 vs. DB:Swiss
Match: SDF2L_MOUSE (Stromal cell-derived factor 2-like protein 1 OS=Mus musculus OX=10090 GN=Sdf2l1 PE=1 SV=2) HSP 1 Score: 69.3218 bits (168), Expect = 1.076e-11 Identity = 32/47 (68.09%), Postives = 38/47 (80.85%), Query Frame = 2
Query: 236 ITYGSVLKLMHEKTKVRLHSHEVPYGSGSGQQSVTGFPSVDDSNSYW 376
+T GSVLKL++ KVRLHSH++ YGSGSGQQSVTG DD+NSYW
Sbjct: 36 VTCGSVLKLLNTHHKVRLHSHDIKYGSGSGQQSVTGVEESDDANSYW 82
BLAST of rna-TanjilR_30696 vs. DB:Swiss
Match: SDF2L_BOVIN (Stromal cell-derived factor 2-like protein 1 OS=Bos taurus OX=9913 GN=SDF2L1 PE=2 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 1.228e-11 Identity = 31/47 (65.96%), Postives = 39/47 (82.98%), Query Frame = 2
Query: 236 ITYGSVLKLMHEKTKVRLHSHEVPYGSGSGQQSVTGFPSVDDSNSYW 376
+T GSVLKL + + +VRLHSH++ YGSGSGQQSVTG + DD+NSYW
Sbjct: 36 VTCGSVLKLFNTQHRVRLHSHDIKYGSGSGQQSVTGVEASDDANSYW 82
BLAST of rna-TanjilR_30696 vs. DB:Swiss
Match: SDF2L_HUMAN (Stromal cell-derived factor 2-like protein 1 OS=Homo sapiens OX=9606 GN=SDF2L1 PE=1 SV=2) HSP 1 Score: 68.9366 bits (167), Expect = 1.415e-11 Identity = 31/47 (65.96%), Postives = 39/47 (82.98%), Query Frame = 2
Query: 236 ITYGSVLKLMHEKTKVRLHSHEVPYGSGSGQQSVTGFPSVDDSNSYW 376
+T GSVLKL++ +VRLHSH++ YGSGSGQQSVTG + DD+NSYW
Sbjct: 36 VTCGSVLKLLNTHHRVRLHSHDIKYGSGSGQQSVTGVEASDDANSYW 82 The following BLAST results are available for this feature:
BLAST of rna-TanjilR_30696 vs. DB:Swiss
Analysis Date: 2020-01-28 (BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot) Total hits: 7
InterPro
Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28
Sequences
The
following sequences are available for this feature:
mRNA sequence >rna-TanjilR_30696_La_Tanjil_v1.0 ID=rna-TanjilR_30696_La_Tanjil_v1.0; Name=rna-TanjilR_30696; organism=Lupinus angustifolius; type=mRNA; length=3015bpback to top protein sequence of rna-TanjilR_30696_La_Tanjil_v1.0 >rna-TanjilR_30696_La_Tanjil_v1.0 ID=rna-TanjilR_30696_La_Tanjil_v1.0; Name=rna-TanjilR_30696_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=220bpback to top mRNA from alignment at Chr_LG03-CM007363.1:23429911..23432925- Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below.>rna-TanjilR_30696_La_Tanjil_v1.0 ID=rna-TanjilR_30696_La_Tanjil_v1.0; Name=rna-TanjilR_30696; organism=Lupinus angustifolius; type=mRNA; length=3015bp; location=Sequence derived from: Chr_LG03-CM007363.1:23429911..23432925- (Lupinus angustifoliusback to top Coding sequence (CDS) from alignment at Chr_LG03-CM007363.1:23429911..23432925- >rna-TanjilR_30696_La_Tanjil_v1.0 ID=rna-TanjilR_30696_La_Tanjil_v1.0; Name=rna-TanjilR_30696; organism=Lupinus angustifolius; type=CDS; length=663bp; location=Sequence derived from: Chr_LG03-CM007363.1:23429911..23432925- (Lupinus angustifoliusback to top |