LR48_mrnaVigan04g037900

Transcript Overview
NameLR48_mrnaVigan04g037900
Unique NameLR48_mrnaVigan04g037900_Va_Jingnong6_v1.1
TypemRNA
OrganismVigna angularis (Adzuki bean, red mung bean, azuki)
Sequence length525
Producthypothetical protein
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr_4-CM003374.1supercontigChr_4-CM003374.1:4616040..4616564 +Vigna angularis Jingnong 6 genome v1.1n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Vigna angularis Jingnong 6 genome v1.12020-05-19
InterProScan: Vigna angularis Jingnong 6 genome v1.12020-05-21
BLAST: V. angularis Jingnong 6 genome v1.12020-05-21
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
ascaR596Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
asasL044Vigna angularis Jingnong 6 genome v1.1Vigna angularis
ascaiR722Cicer arietinum ICC 4958 genome v2Cicer arietinum
asccR0807Cajanus cajan Asha genome v1.0Cajanus cajan
asccR0825Cajanus cajan Asha genome v1.0Cajanus cajan
ascrR675Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
aspsR515Pisum sativum Cameor genome v1aPisum sativum
aspsR517Pisum sativum Cameor genome v1aPisum sativum
aspsR522Pisum sativum Cameor genome v1aPisum sativum
aspsR533Pisum sativum Cameor genome v1aPisum sativum
aspvR614Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
aspvR647Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
asvuR503Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
asvuR540Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
astifR598Vicia faba cv. Tiffany genome v1.0Vicia faba
asvfhR612Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
asvrvR484Vigna radiata cv. VC1973A genome v6.0Vigna radiata
asvrvR521Vigna radiata cv. VC1973A genome v6.0Vigna radiata
asvssR595Vicia sativa cv. Studenica genome v1.0Vicia sativa
asvssR596Vicia sativa cv. Studenica genome v1.0Vicia sativa
asvssR662Vicia sativa cv. Studenica genome v1.0Vicia sativa
asvuaR479Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
asvuaR514Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
ascanR541Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
gene-LR48_Vigan04g037900gene-LR48_Vigan04g037900_Va_Jingnong6_v1.1Vigna angularisgene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
LR48_mrnaVigan04g037900LR48_mrnaVigan04g037900_Va_Jingnong6_v1.1-proteinVigna angularispolypeptide
LR48_mrnaVigan04g037900_Va_Jingnong6_v1.1LR48_mrnaVigan04g037900_Va_Jingnong6_v1.1Vigna angularispolypeptide


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
LR48_mrnaVigan04g037900_Va_Jingnong6_v1.1-start_codon-Chr_4-CM003374.1_Va_Jingnong6_v1.1-1589992784:4616040..4616042LR48_mrnaVigan04g037900_Va_Jingnong6_v1.1-start_codon-Chr_4-CM003374.1_Va_Jingnong6_v1.1-1589992784:4616040..4616042Vigna angularisstart_codon


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
LR48_mrnaVigan04g037900_Va_Jingnong6_v1.1-exon-Chr_4-CM003374.1_Va_Jingnong6_v1.1-1589992784:4616040..4616564LR48_mrnaVigan04g037900_Va_Jingnong6_v1.1-exon-Chr_4-CM003374.1_Va_Jingnong6_v1.1-1589992784:4616040..4616564Vigna angularisexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
LR48_mrnaVigan04g037900_Va_Jingnong6_v1.1-CDS-Chr_4-CM003374.1_Va_Jingnong6_v1.1-1589992784:4616040..4616564LR48_mrnaVigan04g037900_Va_Jingnong6_v1.1-CDS-Chr_4-CM003374.1_Va_Jingnong6_v1.1-1589992784:4616040..4616564Vigna angularisCDS


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
LR48_mrnaVigan04g037900_Va_Jingnong6_v1.1-stop_codon-Chr_4-CM003374.1_Va_Jingnong6_v1.1-1589992784:4616562..4616564LR48_mrnaVigan04g037900_Va_Jingnong6_v1.1-stop_codon-Chr_4-CM003374.1_Va_Jingnong6_v1.1-1589992784:4616562..4616564Vigna angularisstop_codon


Homology
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BLAST of LR48_mrnaVigan04g037900 vs. DB:Swiss
Match: E70A1_ARATH (Exocyst complex component EXO70A1 OS=Arabidopsis thaliana OX=3702 GN=EXO70A1 PE=1 SV=1)

HSP 1 Score: 57.3806 bits (137), Expect = 8.821e-9
Identity = 33/119 (27.73%), Postives = 65/119 (54.62%), Query Frame = 1 
Query:   88 HFEVVIKKVLFS-ENKLCEKVLGDFMEGLVWPECFIKISDKILVVFFRFGEGGARSRKEPQKLFKLLEVFESLEKLKPHISQIFEGEPGADICTRFRELEKLIIDASSKVLWEFELQIE 441
            HF  +  K+LF+ E ++C+++   F    +  +CF +++   + +   FG+  ARS++ P+KLF LL+++E + +L   I  IF+G+   +I      L K +   + +   +FE  +E
Sbjct:  272 HFMRIAVKLLFAGERQVCDQIFRGFDS--LSDQCFAEVTVSSVSMLLSFGDAIARSKRSPEKLFVLLDMYEIMRELHTEIETIFKGKACLEIRDSATGLTKRLAQTAQETFGDFEEAVE 388
[Close]
BLAST of LR48_mrnaVigan04g037900 vs. DB:Swiss
Match: E70E2_ARATH (Exocyst complex component EXO70E2 OS=Arabidopsis thaliana OX=3702 GN=EXO70E2 PE=1 SV=1)

HSP 1 Score: 53.9138 bits (128), Expect = 1.109e-7
Identity = 29/112 (25.89%), Postives = 57/112 (50.89%), Query Frame = 1 
Query:   94 EVVIKKVLFSENKLCEKVLGDFMEGLVWPECFIKISDKILVVFFRFGEGGARSRKEPQKLFKLLEVFESLEKLKPHISQIFEGEPGADICTRFRELEKLIIDASSKVLWEFE 429
            +++ +  L SE +LC+++LGDF    +   CFI+IS   ++    FGE       +P+ L + L ++E   ++   +  +F  E G+ +   F  L K + D ++    +F+
Sbjct:  280 KIITQVYLASEKQLCDQILGDFES--ISTACFIEISKDAILSLLNFGEAVVLRSCKPEMLERFLSMYEVSAEILVDVDNLFPDETGSSLRIAFHNLSKKLADHTTTTFLKFK 389
The following BLAST results are available for this feature:
BLAST of LR48_mrnaVigan04g037900 vs. DB:Swiss
Analysis Date: 2020-05-21 (BLAST: V. angularis Jingnong 6 genome v1.1)
Total hits: 2
Match NameE-valueIdentityDescription
E70A1_ARATH8.821e-927.73Exocyst complex component EXO70A1 OS=Arabidopsis t... [more]
E70E2_ARATH1.109e-725.89Exocyst complex component EXO70E2 OS=Arabidopsis t... [more]
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InterPro
Analysis Name: InterProScan: Vigna angularis Jingnong 6 genome v1.1
Date Performed: 2020-05-21
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004140Exocyst complex component Exo70PFAMPF03081Exo70coord: 29..164
e-value: 2.6E-21
score: 76.0
NoneNo IPR availableGENE3D1.20.1280.170coord: 5..168
e-value: 2.6E-29
score: 104.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..23
IPR016159Cullin repeat-like-containing domain superfamilySUPERFAMILY74788Cullin repeat-likecoord: 33..164

Sequences
The following sequences are available for this feature:

mRNA sequence

>LR48_mrnaVigan04g037900_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan04g037900_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan04g037900; organism=Vigna angularis; type=mRNA; length=525bp
ATGGTGAAGCACGAGGATGAGAATCCTTCGAGCTTGAACGTTCGGAGCAG
TCCCATTTCGTCAATGACGAAGGCTGAGAGCGATCAACACTTCGAAGTCG
TAATCAAGAAGGTCTTGTTTTCAGAAAATAAACTCTGCGAGAAAGTCCTG
GGCGATTTCATGGAGGGTCTAGTTTGGCCAGAATGCTTCATCAAAATCTC
CGACAAGATCTTGGTCGTGTTCTTCCGCTTCGGAGAAGGCGGGGCCCGAA
GCAGGAAAGAGCCCCAGAAGCTCTTCAAACTATTGGAAGTATTTGAATCC
CTAGAAAAACTCAAACCCCATATATCACAAATCTTCGAAGGAGAACCTGG
CGCAGACATATGCACGCGGTTCCGTGAGTTGGAGAAGCTCATAATCGATG
CTTCGAGTAAAGTCTTATGGGAATTCGAACTCCAAATAGAAGGCAACATC
GACGGTCTCCCCCCTCCGCAAGATGGTTCCGTTCCGAAACTAAAGAACCT
AATTTTCAAGAAACCCCTGTTctga
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protein sequence of LR48_mrnaVigan04g037900_Va_Jingnong6_v1.1

>LR48_mrnaVigan04g037900_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan04g037900_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan04g037900_Va_Jingnong6_v1.1; organism=Vigna angularis; type=polypeptide; length=174bp
MVKHEDENPSSLNVRSSPISSMTKAESDQHFEVVIKKVLFSENKLCEKVL
GDFMEGLVWPECFIKISDKILVVFFRFGEGGARSRKEPQKLFKLLEVFES
LEKLKPHISQIFEGEPGADICTRFRELEKLIIDASSKVLWEFELQIEGNI
DGLPPPQDGSVPKLKNLIFKKPLF
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mRNA from alignment at Chr_4-CM003374.1:4616040..4616564+

Legend: polypeptidestart_codonexonCDSstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>LR48_mrnaVigan04g037900_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan04g037900_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan04g037900; organism=Vigna angularis; type=mRNA; length=525bp; location=Sequence derived from: Chr_4-CM003374.1:4616040..4616564+ (Vigna angularis
ATGGTGAAGCACGAGGATGAGAATCCTTCGAGCTTGAACGTTCGGAGCAG
TCCCATTTCGTCAATGACGAAGGCTGAGAGCGATCAACACTTCGAAGTCG
TAATCAAGAAGGTCTTGTTTTCAGAAAATAAACTCTGCGAGAAAGTCCTG
GGCGATTTCATGGAGGGTCTAGTTTGGCCAGAATGCTTCATCAAAATCTC
CGACAAGATCTTGGTCGTGTTCTTCCGCTTCGGAGAAGGCGGGGCCCGAA
GCAGGAAAGAGCCCCAGAAGCTCTTCAAACTATTGGAAGTATTTGAATCC
CTAGAAAAACTCAAACCCCATATATCACAAATCTTCGAAGGAGAACCTGG
CGCAGACATATGCACGCGGTTCCGTGAGTTGGAGAAGCTCATAATCGATG
CTTCGAGTAAAGTCTTATGGGAATTCGAACTCCAAATAGAAGGCAACATC
GACGGTCTCCCCCCTCCGCAAGATGGTTCCGTTCCGAAACTAAAGAACCT
AATTTTCAAGAAACCCCTGTTctga
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Coding sequence (CDS) from alignment at Chr_4-CM003374.1:4616040..4616564+

>LR48_mrnaVigan04g037900_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan04g037900_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan04g037900; organism=Vigna angularis; type=CDS; length=525bp; location=Sequence derived from: Chr_4-CM003374.1:4616040..4616564+ (Vigna angularis
ATGGTGAAGCACGAGGATGAGAATCCTTCGAGCTTGAACGTTCGGAGCAG
TCCCATTTCGTCAATGACGAAGGCTGAGAGCGATCAACACTTCGAAGTCG
TAATCAAGAAGGTCTTGTTTTCAGAAAATAAACTCTGCGAGAAAGTCCTG
GGCGATTTCATGGAGGGTCTAGTTTGGCCAGAATGCTTCATCAAAATCTC
CGACAAGATCTTGGTCGTGTTCTTCCGCTTCGGAGAAGGCGGGGCCCGAA
GCAGGAAAGAGCCCCAGAAGCTCTTCAAACTATTGGAAGTATTTGAATCC
CTAGAAAAACTCAAACCCCATATATCACAAATCTTCGAAGGAGAACCTGG
CGCAGACATATGCACGCGGTTCCGTGAGTTGGAGAAGCTCATAATCGATG
CTTCGAGTAAAGTCTTATGGGAATTCGAACTCCAAATAGAAGGCAACATC
GACGGTCTCCCCCCTCCGCAAGATGGTTCCGTTCCGAAACTAAAGAACCT
AATTTTCAAGAAACCCCTGTTctga
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR004140Exo70
IPR016159Cullin_repeat-like_dom_sf
Vocabulary: Cellular Component
TermDefinition
GO:0000145exocyst
Vocabulary: Biological Process
TermDefinition
GO:0006887exocytosis