LR48_mrnaVigan04g117700

Transcript Overview
NameLR48_mrnaVigan04g117700
Unique NameLR48_mrnaVigan04g117700_Va_Jingnong6_v1.1
TypemRNA
OrganismVigna angularis (Adzuki bean, red mung bean, azuki)
Sequence length819
Producthypothetical protein
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr_4-CM003374.1supercontigChr_4-CM003374.1:17519821..17520639 +Vigna angularis Jingnong 6 genome v1.1n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Vigna angularis Jingnong 6 genome v1.12020-05-19
InterProScan: Vigna angularis Jingnong 6 genome v1.12020-05-21
BLAST: V. angularis Jingnong 6 genome v1.12020-05-21
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
ascaR542Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ascaR555Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
asasR225Vigna angularis Jingnong 6 genome v1.1Vigna angularis
ascaiR640Cicer arietinum ICC 4958 genome v2Cicer arietinum
ascaiR658Cicer arietinum ICC 4958 genome v2Cicer arietinum
asccR0803Cajanus cajan Asha genome v1.0Cajanus cajan
asccR0859Cajanus cajan Asha genome v1.0Cajanus cajan
ascrR622Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
ascrR658Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
aspvR627Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
aspvR634Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
asvuR534Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
asvuR554Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
astifR541Vicia faba cv. Tiffany genome v1.0Vicia faba
astifR558Vicia faba cv. Tiffany genome v1.0Vicia faba
asvfhR554Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
asvfhR572Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
asvrvR508Vigna radiata cv. VC1973A genome v6.0Vigna radiata
asvssR622Vicia sativa cv. Studenica genome v1.0Vicia sativa
asvssR644Vicia sativa cv. Studenica genome v1.0Vicia sativa
asvuaR490Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
asvuaR501Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
gene-LR48_Vigan04g117700gene-LR48_Vigan04g117700_Va_Jingnong6_v1.1Vigna angularisgene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
LR48_mrnaVigan04g117700LR48_mrnaVigan04g117700_Va_Jingnong6_v1.1-proteinVigna angularispolypeptide
LR48_mrnaVigan04g117700_Va_Jingnong6_v1.1LR48_mrnaVigan04g117700_Va_Jingnong6_v1.1Vigna angularispolypeptide


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
LR48_mrnaVigan04g117700_Va_Jingnong6_v1.1-start_codon-Chr_4-CM003374.1_Va_Jingnong6_v1.1-1589992784:17519821..17519823LR48_mrnaVigan04g117700_Va_Jingnong6_v1.1-start_codon-Chr_4-CM003374.1_Va_Jingnong6_v1.1-1589992784:17519821..17519823Vigna angularisstart_codon


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
LR48_mrnaVigan04g117700_Va_Jingnong6_v1.1-exon-Chr_4-CM003374.1_Va_Jingnong6_v1.1-1589992784:17519821..17520639LR48_mrnaVigan04g117700_Va_Jingnong6_v1.1-exon-Chr_4-CM003374.1_Va_Jingnong6_v1.1-1589992784:17519821..17520639Vigna angularisexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
LR48_mrnaVigan04g117700_Va_Jingnong6_v1.1-CDS-Chr_4-CM003374.1_Va_Jingnong6_v1.1-1589992784:17519821..17520639LR48_mrnaVigan04g117700_Va_Jingnong6_v1.1-CDS-Chr_4-CM003374.1_Va_Jingnong6_v1.1-1589992784:17519821..17520639Vigna angularisCDS


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
LR48_mrnaVigan04g117700_Va_Jingnong6_v1.1-stop_codon-Chr_4-CM003374.1_Va_Jingnong6_v1.1-1589992784:17520637..17520639LR48_mrnaVigan04g117700_Va_Jingnong6_v1.1-stop_codon-Chr_4-CM003374.1_Va_Jingnong6_v1.1-1589992784:17520637..17520639Vigna angularisstop_codon


Homology
The following BLAST results are available for this feature:
BLAST of LR48_mrnaVigan04g117700 vs.
Analysis Date: 2020-05-21 (BLAST: V. angularis Jingnong 6 genome v1.1)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan: Vigna angularis Jingnong 6 genome v1.1
Date Performed: 2020-05-21
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 242..262
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 142..173
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 231..272
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 244..272

Sequences
The following sequences are available for this feature:

mRNA sequence

>LR48_mrnaVigan04g117700_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan04g117700_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan04g117700; organism=Vigna angularis; type=mRNA; length=819bp
atggaggaaggtgctgattttgaggatgtggagagagtgttgtgtatacc
tggaggacactttcAAAGGAATAtatctggctcagtggttaacattagga
ggacagATTTAACTCCTCTGGCaaaatattggatggcattttctcatgcc
aacattcagccatgttcacatgtgtcagatattactctcagcagggcact
attcatctactgtgctatcagaaatttgaatgttaatattgggcaggtga
tagctgatgaaatTAGTGTATGTGCTAacacctcaaacaacaaagcacca
ctaggacatccttctttgatcactcacctttgcaagctagctggggtgga
cacttctgttccaccatttgagaggccaagaaaagctattgatgaggctt
attatagacagtactgtggaggtgaggatgtagctcagccagttccacca
cgccgggctcgtagagagagagggcccgcacagagccagacatctgctga
tacacatgaagcagaaccattccagatgagggacatgtatatgtctctta
taggtgctcaattgcagtccattcacagagggcaggtggccactactgag
atgatagtggggatgtatgatacacctccagcccacaggtggactatgga
tgaattccacaatgtagtagcttggccagaagatCCAGTACATGGaggag
gagctggagcagctgaagctttagctagagatatggaagaagatgaagct
gaggaggaggatgcatttgatgatgatgaagatcaggaggaagaggaaga
tacagagagctcagactga
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protein sequence of LR48_mrnaVigan04g117700_Va_Jingnong6_v1.1

>LR48_mrnaVigan04g117700_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan04g117700_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan04g117700_Va_Jingnong6_v1.1; organism=Vigna angularis; type=polypeptide; length=272bp
MEEGADFEDVERVLCIPGGHFQRNISGSVVNIRRTDLTPLAKYWMAFSHA
NIQPCSHVSDITLSRALFIYCAIRNLNVNIGQVIADEISVCANTSNNKAP
LGHPSLITHLCKLAGVDTSVPPFERPRKAIDEAYYRQYCGGEDVAQPVPP
RRARRERGPAQSQTSADTHEAEPFQMRDMYMSLIGAQLQSIHRGQVATTE
MIVGMYDTPPAHRWTMDEFHNVVAWPEDPVHGGGAGAAEALARDMEEDEA
EEEDAFDDDEDQEEEEDTESSD
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mRNA from alignment at Chr_4-CM003374.1:17519821..17520639+

Legend: polypeptidestart_codonexonCDSstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>LR48_mrnaVigan04g117700_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan04g117700_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan04g117700; organism=Vigna angularis; type=mRNA; length=819bp; location=Sequence derived from: Chr_4-CM003374.1:17519821..17520639+ (Vigna angularis
atggaggaaggtgctgattttgaggatgtggagagagtgttgtgtatacc
tggaggacactttcAAAGGAATAtatctggctcagtggttaacattagga
ggacagATTTAACTCCTCTGGCaaaatattggatggcattttctcatgcc
aacattcagccatgttcacatgtgtcagatattactctcagcagggcact
attcatctactgtgctatcagaaatttgaatgttaatattgggcaggtga
tagctgatgaaatTAGTGTATGTGCTAacacctcaaacaacaaagcacca
ctaggacatccttctttgatcactcacctttgcaagctagctggggtgga
cacttctgttccaccatttgagaggccaagaaaagctattgatgaggctt
attatagacagtactgtggaggtgaggatgtagctcagccagttccacca
cgccgggctcgtagagagagagggcccgcacagagccagacatctgctga
tacacatgaagcagaaccattccagatgagggacatgtatatgtctctta
taggtgctcaattgcagtccattcacagagggcaggtggccactactgag
atgatagtggggatgtatgatacacctccagcccacaggtggactatgga
tgaattccacaatgtagtagcttggccagaagatCCAGTACATGGaggag
gagctggagcagctgaagctttagctagagatatggaagaagatgaagct
gaggaggaggatgcatttgatgatgatgaagatcaggaggaagaggaaga
tacagagagctcagactga
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Coding sequence (CDS) from alignment at Chr_4-CM003374.1:17519821..17520639+

>LR48_mrnaVigan04g117700_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan04g117700_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan04g117700; organism=Vigna angularis; type=CDS; length=819bp; location=Sequence derived from: Chr_4-CM003374.1:17519821..17520639+ (Vigna angularis
atggaggaaggtgctgattttgaggatgtggagagagtgttgtgtatacc
tggaggacactttcAAAGGAATAtatctggctcagtggttaacattagga
ggacagATTTAACTCCTCTGGCaaaatattggatggcattttctcatgcc
aacattcagccatgttcacatgtgtcagatattactctcagcagggcact
attcatctactgtgctatcagaaatttgaatgttaatattgggcaggtga
tagctgatgaaatTAGTGTATGTGCTAacacctcaaacaacaaagcacca
ctaggacatccttctttgatcactcacctttgcaagctagctggggtgga
cacttctgttccaccatttgagaggccaagaaaagctattgatgaggctt
attatagacagtactgtggaggtgaggatgtagctcagccagttccacca
cgccgggctcgtagagagagagggcccgcacagagccagacatctgctga
tacacatgaagcagaaccattccagatgagggacatgtatatgtctctta
taggtgctcaattgcagtccattcacagagggcaggtggccactactgag
atgatagtggggatgtatgatacacctccagcccacaggtggactatgga
tgaattccacaatgtagtagcttggccagaagatCCAGTACATGGaggag
gagctggagcagctgaagctttagctagagatatggaagaagatgaagct
gaggaggaggatgcatttgatgatgatgaagatcaggaggaagaggaaga
tacagagagctcagactga
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