LR48_mrnaVigan04g198800
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Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following start_codon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
Homology
BLAST of LR48_mrnaVigan04g198800 vs. DB:Swiss
Match: BH143_ARATH (Transcription factor bHLH143 OS=Arabidopsis thaliana OX=3702 GN=BHLH143 PE=1 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 3.619e-18 Identity = 95/251 (37.85%), Postives = 131/251 (52.19%), Query Frame = 1
Query: 322 APFGESSSPRKQFLVIDQTADQTTVVYSSRFGSPCECLASWHSKLHGGNNWRGDEPSFKGDLNLNSMNEPTLADKVHENHETSIESEMHEDTEEINALLYXXXXXXXXXXXXXXXXXXXXEVTSTGHSPSTMTTHDDCKTSRDETVNEVASSAKKTKKRKLLDGCYDDIQLTDTASSQNMNKSSATCDDX--XXXXXXXXXXXXXXXXXXXXXEKIQDVLSILQSIIPGGKDKGPVMLLDDAIRSLKSLKQ 1068
AP G S RK+F+V DQ+ +QT ++ + G P +S ++ GN P KG +++ E L + HEN E +SEMHEDTEEINALLYSD DD + DD+ V STGHSP T+ T+ + E K++KLLD Y D + S K D++ ES SS GS S+++ +K+KI L IL+S++PG K K ++LLD+AI LK LKQ
Sbjct: 83 APEGALKSSRKRFIVFDQSGEQTRLL---QCGFPLRFPSSMDAER--GNILGALHPE-KGFSKDHAIQEKILQHEDHENGEE--DSEMHEDTEEINALLYSDDDDNDDWESDDE-------VMSTGHSPFTVEQQACNITTEELDETESTVDGPLLKRQKLLDHSYRD----SSPSLVGTTKVKGLSDENLPESNISSKQETGSGLSDEQSRKDKIHTALRILESVVPGAKGKEALLLLDEAIDYLKLLKQ 314
BLAST of LR48_mrnaVigan04g198800 vs. DB:Swiss
Match: SAC51_ARATH (Transcription factor SAC51 OS=Arabidopsis thaliana OX=3702 GN=SAC51 PE=2 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 4.270e-13 Identity = 85/254 (33.46%), Postives = 123/254 (48.43%), Query Frame = 1
Query: 325 PFGESSSPRKQFLVIDQTADQTTVV---YSSRFGSPCECLASWHSKLHGGNNWRGDEPSFKGDLNLNSMNEPTLADKVHENHETSIESEMHEDTEEINALLYXXXXXXXXXXXXXXXXXXXXEVTSTGHSPSTMTTHDDCKTSRDETVNEVASSAKKTKKRKLLDGCYDDIQLTDTASSQNMNKSSATCDDXXXXXXXXXXXXXX---XXXXXXXXEKIQDVLSILQSIIPGGKDKGPVMLLDDAIRSLKSLKQ 1068
P G S +K+ L+ DQ+ DQT ++ + RF S A+ KL + +G E +FK D ++ H++ T ESEMHEDTEEINALLYSD D + DD+ V STGHSP + + + E+ K+ K ++ D L T SS +N SS D + + SN++ KK+KI+ L IL+S++PG K ++LLD+AI LK LK+
Sbjct: 89 PLGALESSQKRLLIFDQSGDQTRLLQCPFPLRFPSHA---AAEPVKL---SELQGIEKAFKED-----------GEEFHKSDGT--ESEMHEDTEEINALLYSDDDYDDDCESDDE-------VMSTGHSP-----YPNEGVCNKRELEEIDGPCKRQKLLDKVNNISDLSSLVGTESSTQLNGSSFLKDKKLPESKTISTKEDTGSGLSNEQSKKDKIRTALKILESVVPGAKGNEALLLLDEAIDYLKLLKR 311
BLAST of LR48_mrnaVigan04g198800 vs. DB:Swiss
Match: BH145_ARATH (Transcription factor bHLH145 OS=Arabidopsis thaliana OX=3702 GN=BHLH145 PE=1 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 1.039e-12 Identity = 80/291 (27.49%), Postives = 133/291 (45.70%), Query Frame = 1
Query: 211 GWFYCLPRFRQEFSPAPNFTVEGKTPFDHVRGFDDKNAPFGESSSPRKQFLVIDQTADQTTVVYSSRFGSPCECLASWHSKLHGGNNWRGDEPSFKGDLNLNSMNEPTLADKVHENHETSIESEMHEDTEEINALLYXXXXXXXXXXXXXXXXXXXXEVTSTGHSPSTMTTHDDCKTSRDETVNEVASSAK--KTKKRKLLDGCYDDIQLTDTASSQNMNKSSATCDDXXXXXXXXXXXXXXXXXXXXXXEKIQDVLSILQSIIPGGKDKGPVMLLDDAIRSLKSLKQKAQ 1077
GW + +Q+F P N ++ + P V G K E +K+FLV DQ+ DQTT++ +S E L K H + + + DL V + + E ++ ED+EE+NALLYS+ + ++D EVTS HSPS + + R++ + S + KKRK+L+ T S ++ S +CD++ + S + EKI + +S+L+S++PG + P++++D AI LKSLK +A+
Sbjct: 66 GWVHGSSHLQQQFLPPQNQCMK-QVPL-QVDGVISK----AEEQCSQKRFLVFDQSGDQTTLLLASDIRKSFETL-----KQHACPDMKEELQRSNKDLF------------VCHGMQGNSEPDLKEDSEELNALLYSEDESGYCSEED--------EVTSADHSPSIVVS------GREDQKTFLGSYGQPLNAKKRKILE--------TSNESMRDAESSCGSCDNTRISFLKRSKLSSNKIGE----EKIFETVSLLRSVVPGEELVDPILVIDRAIDYLKSLKMEAK 307 The following BLAST results are available for this feature:
BLAST of LR48_mrnaVigan04g198800 vs. DB:Swiss
Analysis Date: 2020-05-21 (BLAST: V. angularis Jingnong 6 genome v1.1) Total hits: 3
InterPro
Analysis Name: InterProScan: Vigna angularis Jingnong 6 genome v1.1
Date Performed: 2020-05-21
Sequences
The
following sequences are available for this feature:
mRNA sequence >LR48_mrnaVigan04g198800_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan04g198800_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan04g198800; organism=Vigna angularis; type=mRNA; length=1101bpback to top protein sequence of LR48_mrnaVigan04g198800_Va_Jingnong6_v1.1 >LR48_mrnaVigan04g198800_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan04g198800_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan04g198800_Va_Jingnong6_v1.1; organism=Vigna angularis; type=polypeptide; length=366bpback to top mRNA from alignment at Chr_4-CM003374.1:29024070..29025170- Legend: polypeptideCDSexonstart_codonstop_codon Hold the cursor over a type above to highlight its positions in the sequence below.>LR48_mrnaVigan04g198800_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan04g198800_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan04g198800; organism=Vigna angularis; type=mRNA; length=1101bp; location=Sequence derived from: Chr_4-CM003374.1:29024070..29025170- (Vigna angularisback to top Coding sequence (CDS) from alignment at Chr_4-CM003374.1:29024070..29025170- >LR48_mrnaVigan04g198800_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan04g198800_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan04g198800; organism=Vigna angularis; type=CDS; length=1101bp; location=Sequence derived from: Chr_4-CM003374.1:29024070..29025170- (Vigna angularisback to top |