LR48_mrnaVigan04g211700
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Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following start_codon feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following intron feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
Homology
BLAST of LR48_mrnaVigan04g211700 vs. DB:Swiss
Match: FLZ10_ARATH (FCS-Like Zinc finger 10 OS=Arabidopsis thaliana OX=3702 GN=FLZ10 PE=1 SV=1) HSP 1 Score: 132.109 bits (331), Expect = 1.084e-33 Identity = 114/353 (32.29%), Postives = 156/353 (44.19%), Query Frame = 1 Query: 121 IKRHSIFNVPCLFVGLGPKGLLDSDSVRSPTSPLDARVLSNLGNPVRKPRS-SPHEGHPRSWDCCKVGLGIVESLED---CSRFSGKILQSPESKRVNLSPQMMIKAPNCQIHRDFLEGSKSLPKDFCKAPYAPKNGSVTHKGESEFTVLFEIGESGLDHELFGRTRTRSCSLDSCSPLKELSGLNTSFSDSDTENFAVKDVNMQLCSPPHFIGGSQYSNTFPPPTKLNTNPLSISSSNEFINSLSATEIELSEDYTCVISYGPNPKTTHIFGDCILET-HSNAFK---IHEEKEKVVNTVANRSGSP-NPYPSSDFLSFCHHCNKKLEEGKDIYIYGGEKAFCSLTCRAMEI 1152
I+ H + + +F G P D +S SPTSPLD R+ S LGNP S S G RSWD KVGL IV SL D + +L SP+SK + M + + F + +PKD +FEIG +D + ++ S CS ENF+V + Q+ +P S++ E +++E+SEDYTCVIS+GPNPKTTH +GD ++E+ K EKE + +P + P DFLSFC+ C+KKL G+DIY+Y G KAFCS CR+ EI
Sbjct: 25 IRSHKL--ISSVFEGKCPS---DYESAWSPTSPLDFRLFSTLGNPFAASSSRSIWRGKQRSWDSGKVGLSIVHSLVDDHHTDSSATIVLPSPDSKNIIFGSLMRSGQKPHLLSQPFTKAL--MPKDVIP------------------NAVFEIGHDVID--VLELRKSGSVDAAYCS---------------GAENFSVNNNACQVT---------------------KQDPGSLNGGTE-------SDMEISEDYTCVISHGPNPKTTHFYGDQVMESVEREELKNRCCKNEKESIFAVAPLDLTTPVDVLPPKDFLSFCYGCSKKLGMGEDIYMYSGYKAFCSSECRSKEI 307
BLAST of LR48_mrnaVigan04g211700 vs. DB:Swiss
Match: FLZ11_ARATH (FCS-Like Zinc finger 11 OS=Arabidopsis thaliana OX=3702 GN=FLZ11 PE=1 SV=1) HSP 1 Score: 105.145 bits (261), Expect = 4.670e-24 Identity = 52/100 (52.00%), Postives = 68/100 (68.00%), Query Frame = 1 Query: 868 EDYTCVISYGPNPKTTHIFGDCILETHSNAFKIHEEKEKVVNTVANRSGSPNPYPSSDFLSFCHHCNKKLEEGKDIYIYGGEKAFCSLTCRAMEIMIDEE 1167
EDYTC+I++GPNPKTTHI+GD +LE H N K E+ ++ +V +PS +FL C+ CNKKL G DIY+Y EK+FCS CR+ E+MIDEE
Sbjct: 218 EDYTCIIAHGPNPKTTHIYGDRVLECHKNELKGDEDNKEKFGSV---------FPSDNFLGICNFCNKKLGGGDDIYMY-REKSFCSEECRSEEMMIDEE 307
BLAST of LR48_mrnaVigan04g211700 vs. DB:Swiss
Match: FLZ8_ARATH (FCS-Like Zinc finger 8 OS=Arabidopsis thaliana OX=3702 GN=FLZ8 PE=1 SV=1) HSP 1 Score: 90.1225 bits (222), Expect = 3.854e-19 Identity = 45/107 (42.06%), Postives = 66/107 (61.68%), Query Frame = 1 Query: 847 ATEIELSEDYTCVISYGPNPKTTHIFGDCILETHSNAFKIHEEKEKVVNTVANRSGSPNPYPSSDFLSFCHHCNKKLEEGKDIYIYGGEKAFCSLTCRAMEIMIDEE 1167
A+++ELSEDYTCV +GPNP+T HIF +CI+E+ + V + ++ S P FLS C +C K L DI++Y G++AFCS CR++E+M+ EE
Sbjct: 164 ASDMELSEDYTCVTCHGPNPRTIHIFDNCIVESQPGVV-FFRSSDPVNESDSDYS------PPDSFLSCCCNCKKSLGPRDDIFMYRGDRAFCSSECRSIEMMMSEE 263
BLAST of LR48_mrnaVigan04g211700 vs. DB:Swiss
Match: MARD1_ARATH (Protein MARD1 OS=Arabidopsis thaliana OX=3702 GN=MARD1 PE=1 SV=2) HSP 1 Score: 80.8777 bits (198), Expect = 6.520e-16 Identity = 44/114 (38.60%), Postives = 60/114 (52.63%), Query Frame = 1 Query: 841 LSATEIELSEDYTCVISYGPNPKTTHIFGDCILETHSNAFKIHEEKEKVVNTVANRSGSPNPYPSSD------FLSFCHHCNKKLEEGKDIYIYGGEKAFCSLTCRAMEIMIDE 1164
L+ +EI+ +EDYT VIS+GPNP THIF + + A P P P+ + FLS C C K L++ +DIYIY GEK FCS CR E+++D+
Sbjct: 165 LAVSEIDQTEDYTRVISHGPNPTITHIFDNSVF------------------VEATPCSVPLPQPAMETKSTESFLSRCFTCKKNLDQKQDIYIYRGEKGFCSSECRYQEMLLDQ 260
BLAST of LR48_mrnaVigan04g211700 vs. DB:Swiss
Match: FLZ13_ARATH (FCS-Like Zinc finger 13 OS=Arabidopsis thaliana OX=3702 GN=FLZ13 PE=1 SV=1) HSP 1 Score: 63.5438 bits (153), Expect = 3.247e-10 Identity = 46/114 (40.35%), Postives = 61/114 (53.51%), Query Frame = 1 Query: 853 EIELS-EDYTCVISYGPNPKTTHIFGDCILETHSNAFKIHEEKEKVVNT--VANRSGSPNPYPSSDFLSFCHHCNKKLEEGKDIYIYGGEKAFCSLTCRAMEIMIDEELEKSNT 1185
EI+LS E+YT V S PN T + D E N ++ + V+ V R P ++FLS C C KKL+ GKDIY+Y GE FCS CR+++IM DE E+ T
Sbjct: 89 EIDLSDEEYTYVTS--PNGPTKVYYNDDGFELSENDYRRVHKPMVTVDEPPVIERQSVRGP---TEFLSSCCLCKKKLQ-GKDIYMYKGEMGFCSAECRSVQIMNDERQEQCKT 196
BLAST of LR48_mrnaVigan04g211700 vs. DB:Swiss
Match: FLZ5_ARATH (FCS-Like Zinc finger 5 OS=Arabidopsis thaliana OX=3702 GN=FLZ5 PE=1 SV=1) HSP 1 Score: 60.4622 bits (145), Expect = 8.377e-10 Identity = 25/48 (52.08%), Postives = 32/48 (66.67%), Query Frame = 1 Query: 1033 SSDFLSFCHHCNKKLEEGKDIYIYGGEKAFCSLTCRAMEIMIDEELEK 1176
S DFL C C + L G+DIY+Y G++AFCSL CR +I +DE EK
Sbjct: 75 SEDFLRSCSLCKRLLVHGRDIYMYRGDRAFCSLECRQQQITVDERKEK 122
BLAST of LR48_mrnaVigan04g211700 vs. DB:Swiss
Match: FLZ14_ARATH (FCS-Like Zinc finger 14 OS=Arabidopsis thaliana OX=3702 GN=FLZ14 PE=1 SV=1) HSP 1 Score: 60.8474 bits (146), Expect = 3.301e-9 Identity = 47/134 (35.07%), Postives = 69/134 (51.49%), Query Frame = 1 Query: 868 EDYTCVI-SYGPNPK-TTHIFGDCILETHSNAFKIHEEKEKVVNTVANRSGSPNPYPSSD---FLSFCHHCNKKLEEGKDIYIYGGEKAFCSLTCRAMEIMIDEELEKSNTDPPCENSAKPKLGELLFETGILT 1254
EDYT V +GP+ T ++ E S+ KI++++ + + V + SP P FL+ C+ C KKL G+DI+IY GEKAFCS CR+ I DE E+ + + S P +F TG+L
Sbjct: 121 EDYTLVTCHHGPSGSCNTRVYDKDGFECFSS--KINDDRRERLFVVDVVTESPENSPEFQGLGFLNSCYLCRKKLH-GQDIFIYRGEKAFCSTECRSSHIANDERKERCRS----KFSTSPYTAGQIFSTGVLV 247
BLAST of LR48_mrnaVigan04g211700 vs. DB:Swiss
Match: FLZ18_ARATH (FCS-Like Zinc finger 18 OS=Arabidopsis thaliana OX=3702 GN=FLZ18 PE=1 SV=1) HSP 1 Score: 56.225 bits (134), Expect = 1.431e-8 Identity = 32/77 (41.56%), Postives = 44/77 (57.14%), Query Frame = 1 Query: 967 HEEKEKVVNTVAN---RSGSPNPYPSSD-FLSFCHHCNKKLEEGKDIYIYGGEKAFCSLTCRAMEIMIDE--ELEKS 1179
+ +EK+ N V R NP S FL CH CNK+L + KD+Y+Y G+ FCS CR +++ID+ ELE S
Sbjct: 13 RDSREKLNNIVIKSSLRLNRSNPNISELCFLKTCHLCNKQLHQDKDVYMYRGDLGFCSRECRESQMLIDDRKELEAS 89
BLAST of LR48_mrnaVigan04g211700 vs. DB:Swiss
Match: FLZ17_ARATH (FCS-Like Zinc finger 17 OS=Arabidopsis thaliana OX=3702 GN=FLZ17 PE=1 SV=1) HSP 1 Score: 56.225 bits (134), Expect = 1.431e-8 Identity = 32/77 (41.56%), Postives = 44/77 (57.14%), Query Frame = 1 Query: 967 HEEKEKVVNTVAN---RSGSPNPYPSSD-FLSFCHHCNKKLEEGKDIYIYGGEKAFCSLTCRAMEIMIDE--ELEKS 1179
+ +EK+ N V R NP S FL CH CNK+L + KD+Y+Y G+ FCS CR +++ID+ ELE S
Sbjct: 13 RDSREKLNNIVIKSSLRLNRSNPNISELCFLKTCHLCNKQLHQDKDVYMYRGDLGFCSRECRESQMLIDDRKELEAS 89
BLAST of LR48_mrnaVigan04g211700 vs. DB:Swiss
Match: FLZ15_ARATH (FCS-Like Zinc finger 15 OS=Arabidopsis thaliana OX=3702 GN=FLZ15 PE=1 SV=1) HSP 1 Score: 56.6102 bits (135), Expect = 1.853e-8 Identity = 23/47 (48.94%), Postives = 33/47 (70.21%), Query Frame = 1 Query: 1027 YPSSDFLSFCHHCNKKLEEGKDIYIYGGEKAFCSLTCRAMEIMIDEE 1167
Y S FL C C +KL KDIY+Y G++AFCS+ CR+ ++++DEE
Sbjct: 63 YQDSGFLEHCFLCRRKLLPAKDIYMYKGDRAFCSVECRSKQMIMDEE 109 The following BLAST results are available for this feature:
BLAST of LR48_mrnaVigan04g211700 vs. DB:Swiss
Analysis Date: 2020-05-21 (BLAST: V. angularis Jingnong 6 genome v1.1) Total hits: 10 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan: Vigna angularis Jingnong 6 genome v1.1
Date Performed: 2020-05-21 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >LR48_mrnaVigan04g211700_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan04g211700_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan04g211700; organism=Vigna angularis; type=mRNA; length=1524bpback to top protein sequence of LR48_mrnaVigan04g211700_Va_Jingnong6_v1.1 >LR48_mrnaVigan04g211700_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan04g211700_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan04g211700_Va_Jingnong6_v1.1; organism=Vigna angularis; type=polypeptide; length=420bpback to top mRNA from alignment at Chr_4-CM003374.1:30412846..30414369+ Legend: polypeptidestart_codonexonCDSintronstop_codon Hold the cursor over a type above to highlight its positions in the sequence below.>LR48_mrnaVigan04g211700_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan04g211700_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan04g211700; organism=Vigna angularis; type=mRNA; length=1524bp; location=Sequence derived from: Chr_4-CM003374.1:30412846..30414369+ (Vigna angularisback to top Coding sequence (CDS) from alignment at Chr_4-CM003374.1:30412846..30414369+ >LR48_mrnaVigan04g211700_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan04g211700_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan04g211700; organism=Vigna angularis; type=CDS; length=1263bp; location=Sequence derived from: Chr_4-CM003374.1:30412846..30414369+ (Vigna angularisback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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