LR48_mrnaVigan04g224000

Transcript Overview
NameLR48_mrnaVigan04g224000
Unique NameLR48_mrnaVigan04g224000_Va_Jingnong6_v1.1
TypemRNA
OrganismVigna angularis (Adzuki bean, red mung bean, azuki)
Sequence length822
Producthypothetical protein
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr_4-CM003374.1supercontigChr_4-CM003374.1:31653617..31654438 -Vigna angularis Jingnong 6 genome v1.1n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Vigna angularis Jingnong 6 genome v1.12020-05-19
InterProScan: Vigna angularis Jingnong 6 genome v1.12020-05-21
BLAST: V. angularis Jingnong 6 genome v1.12020-05-21
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
ascaR536Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ascaR547Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ascaR553Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
asasL046Vigna angularis Jingnong 6 genome v1.1Vigna angularis
asasL206Vigna angularis Jingnong 6 genome v1.1Vigna angularis
asasR208Vigna angularis Jingnong 6 genome v1.1Vigna angularis
asasR214Vigna angularis Jingnong 6 genome v1.1Vigna angularis
anasL0114Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anasL0368Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anasL0422Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anasL0840Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anasL1090Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ascaiR633Cicer arietinum ICC 4958 genome v2Cicer arietinum
ascaiR649Cicer arietinum ICC 4958 genome v2Cicer arietinum
ascaiR660Cicer arietinum ICC 4958 genome v2Cicer arietinum
asccR0866Cajanus cajan Asha genome v1.0Cajanus cajan
ascrR614Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
ascrR615Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
ascrR628Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
aspsR537Pisum sativum Cameor genome v1aPisum sativum
aspvR591Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
aspvR595Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
aspvR644Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
asvuR491Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
asvuR532Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
asvuR538Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
astifR567Vicia faba cv. Tiffany genome v1.0Vicia faba
astifR576Vicia faba cv. Tiffany genome v1.0Vicia faba
astifR591Vicia faba cv. Tiffany genome v1.0Vicia faba
astifR617Vicia faba cv. Tiffany genome v1.0Vicia faba
asvfhR579Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
asvfhR590Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
asvfhR605Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
asvfhR631Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
asvrvR466Vigna radiata cv. VC1973A genome v6.0Vigna radiata
asvrvR488Vigna radiata cv. VC1973A genome v6.0Vigna radiata
asvrvR516Vigna radiata cv. VC1973A genome v6.0Vigna radiata
asvssR602Vicia sativa cv. Studenica genome v1.0Vicia sativa
asvssR614Vicia sativa cv. Studenica genome v1.0Vicia sativa
asvssR620Vicia sativa cv. Studenica genome v1.0Vicia sativa
asvssR652Vicia sativa cv. Studenica genome v1.0Vicia sativa
asvuaR487Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
asvuaR489Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
asvuaR512Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
ascanR484Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
ascanR492Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
ascanR500Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum

Orthologs
Gene/TranscriptAssemblySpecies
jg55313.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Ca_08392.1Cicer arietinum ICC 4958 genome v2Cicer arietinum
Vigun09g214200.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
Vigun10g195000.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
rna-XM_014642949.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
Vfaba.Hedin2.R1.2g180480.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
evm.model.Chr09.1574.1.62113177Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
Cr_02958.1Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
Ca_01721Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
Phvul.009G088600.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
rna-XM_004501318.3Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
jg57533.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Vfaba.Tiffany.R1.2g211000.1Vicia faba cv. Tiffany genome v1.0Vicia faba
rna-TanjilR_12476Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
rna-KK1_009492Cajanus cajan Asha genome v1.0Cajanus cajan
rna-XM_014659487.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
Psat5g031920.1Pisum sativum Cameor genome v1aPisum sativum
Vfaba.Hedin2.R1.2g270680.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
Phvul.010G160400.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
gene-LR48_Vigan04g224000gene-LR48_Vigan04g224000_Va_Jingnong6_v1.1Vigna angularisgene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
LR48_mrnaVigan04g224000LR48_mrnaVigan04g224000_Va_Jingnong6_v1.1-proteinVigna angularispolypeptide
LR48_mrnaVigan04g224000_Va_Jingnong6_v1.1LR48_mrnaVigan04g224000_Va_Jingnong6_v1.1Vigna angularispolypeptide


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
LR48_mrnaVigan04g224000_Va_Jingnong6_v1.1-start_codon-Chr_4-CM003374.1_Va_Jingnong6_v1.1-1589992784:31654436..31654438LR48_mrnaVigan04g224000_Va_Jingnong6_v1.1-start_codon-Chr_4-CM003374.1_Va_Jingnong6_v1.1-1589992784:31654436..31654438Vigna angularisstart_codon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
LR48_mrnaVigan04g224000_Va_Jingnong6_v1.1-CDS-Chr_4-CM003374.1_Va_Jingnong6_v1.1-1589992784:31653617..31654438LR48_mrnaVigan04g224000_Va_Jingnong6_v1.1-CDS-Chr_4-CM003374.1_Va_Jingnong6_v1.1-1589992784:31653617..31654438Vigna angularisCDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
LR48_mrnaVigan04g224000_Va_Jingnong6_v1.1-exon-Chr_4-CM003374.1_Va_Jingnong6_v1.1-1589992784:31653617..31654438LR48_mrnaVigan04g224000_Va_Jingnong6_v1.1-exon-Chr_4-CM003374.1_Va_Jingnong6_v1.1-1589992784:31653617..31654438Vigna angularisexon


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
LR48_mrnaVigan04g224000_Va_Jingnong6_v1.1-stop_codon-Chr_4-CM003374.1_Va_Jingnong6_v1.1-1589992784:31653617..31653619LR48_mrnaVigan04g224000_Va_Jingnong6_v1.1-stop_codon-Chr_4-CM003374.1_Va_Jingnong6_v1.1-1589992784:31653617..31653619Vigna angularisstop_codon


Homology
[Close]
BLAST of LR48_mrnaVigan04g224000 vs. DB:Swiss
Match: CAF1G_ARATH (Probable CCR4-associated factor 1 homolog 7 OS=Arabidopsis thaliana OX=3702 GN=CAF1-7 PE=2 SV=2)

HSP 1 Score: 443.736 bits (1140), Expect = 4.871e-158
Identity = 209/272 (76.84%), Postives = 242/272 (88.97%), Query Frame = 1 
Query:    1 MSIIPKGDSVQIREVWNDNLEEEFALIREIVDEYNYVAMDTEFPGVVLRPVGNFKNINDYNYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGSESP-CIWQFNFREFNISEDIFASDSIELLRQCGIDFKKNSEKGIDVNRFGELLMSSGIVLNDAVHWVTFHSGYDFGYLLKLLTCRSLPDTQAGFFDLIKMYFPMVYDIKHLMKFCNSLHGGLNKLAELLEVERVGVCHQAGSDSLLTSCTFRKLRDTFFSGSTEKYAGVLYGLGVENGQ 813
            MS+  K DS+QIREVWNDNLE E ALIRE+VD++ +VAMDTEFPG+V RPVG FK   +Y+Y+TLK NV++LK+IQLGLTFSDE GNLPTCG+++  CIWQFNFREF++  DI+A+DSIELLRQ GIDF KN+E GID  RF ELLMSSGIVLN+ VHWVTFHSGYDFGYLLKLLTC++LP+TQ GFF++I +YFP VYDIKHLMKFCNSLHGGLNKLAELL+VERVG+CHQAGSDSLLTSCTFRKL++ FF GS EKY+GVLYGLGVENGQ
Sbjct:    1 MSLFLKDDSIQIREVWNDNLESEMALIREVVDDFPFVAMDTEFPGIVCRPVGTFKTNTEYHYETLKTNVNILKMIQLGLTFSDEKGNLPTCGTDNKYCIWQFNFREFDLESDIYATDSIELLRQSGIDFVKNNEFGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLTCQNLPETQTGFFEMISVYFPRVYDIKHLMKFCNSLHGGLNKLAELLDVERVGICHQAGSDSLLTSCTFRKLQENFFIGSMEKYSGVLYGLGVENGQ 272
[Close]
BLAST of LR48_mrnaVigan04g224000 vs. DB:Swiss
Match: CAF1F_ARATH (Probable CCR4-associated factor 1 homolog 6 OS=Arabidopsis thaliana OX=3702 GN=CAF1-6 PE=2 SV=1)

HSP 1 Score: 437.958 bits (1125), Expect = 7.675e-156
Identity = 205/272 (75.37%), Postives = 236/272 (86.76%), Query Frame = 1 
Query:    1 MSIIPKGDSVQIREVWNDNLEEEFALIREIVDEYNYVAMDTEFPGVVLRPVGNFKNINDYNYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGSESPCIWQFNFREFNISEDIFASDSIELLRQCGIDFKKNSEKGIDVNRFGELLMSSGIVLNDAVHWVTFHSGYDFGYLLKLLTCRSLPDTQAGFFDLIKMYFPMVYDIKHLMKFCNSLHGGLNKLAELLEVERVGVCHQAGSDSLLTSCTFRKLRDTFFSGSTEKYAGVLYGLGVENGQT 816
            MS+  K DS+QIREVWNDNL+EE  LIR++VD++ YVAMDTEFPG+V+RPVG FK+  DY+Y+TLK NV++LK+IQLGLTFS+E GNLPTCG++  CIWQFNFREF++  DIFA DSIELL+Q GID  KN+  GID  RF ELLMSSGIVLN+ VHWVTFHSGYDFGYLLKLLTC++LPD+Q  FF LI +YFP VYDIKHLMKFCNSLHGGLNKLAELLEVERVG+CHQAGSDSLLTSCTFRKL++ FF G   KY+GVLYGLGVENGQ 
Sbjct:    1 MSLFLKDDSIQIREVWNDNLQEEMDLIRDVVDDFPYVAMDTEFPGIVVRPVGTFKSNADYHYETLKTNVNILKMIQLGLTFSNEQGNLPTCGTDKYCIWQFNFREFDLDSDIFALDSIELLKQSGIDLAKNTLDGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLTCQNLPDSQTDFFKLINVYFPTVYDIKHLMKFCNSLHGGLNKLAELLEVERVGICHQAGSDSLLTSCTFRKLKENFFVGPLHKYSGVLYGLGVENGQV 272
[Close]
BLAST of LR48_mrnaVigan04g224000 vs. DB:Swiss
Match: CAF1J_ARATH (Probable CCR4-associated factor 1 homolog 10 OS=Arabidopsis thaliana OX=3702 GN=CAF1-10 PE=2 SV=1)

HSP 1 Score: 433.335 bits (1113), Expect = 6.481e-154
Identity = 206/273 (75.46%), Postives = 236/273 (86.45%), Query Frame = 1 
Query:    1 MSIIPKGDSVQIREVWNDNLEEEFALIREIVDEYNYVAMDTEFPGVVLRPVGNFKNINDYNYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGSESPCIWQFNFREFNISEDIFASDSIELLRQCGIDFKKNSEKGIDVNRFGELLMSSGIVLNDAVHWVTFHSGYDFGYLLKLLTCRSLPDTQAGFFDLIKMYFPMVYDIKHLMKFCNSLHGGLNKLAELLEVERVGVCHQAGSDSLLTSCTFRKLRDTFFSGSTEKYAGVLYGLGVENGQTN 819
            M+   K DS+ IREVW+ NL EEFALIREIVD+++Y+AMDTEFPGVVL+PV  FK  ND NY+TLK+NVD+LKLIQ+GLTFSDENGNLPTCG++  CIWQFNFREFNI EDI+AS+SIELLRQCGIDFKKN EKGIDV RFGEL+MSSGIVLNDA+ WVTFH GYDFGYL+KLLTC+ LP  QA FF L+ +YFP VYDIKHLM FCN L GGLN+LAEL+ VERVG+CHQAGSDSLLT  +FRKL++ +F GSTEKY GVLYGLGVE+G T 
Sbjct:    1 MAETLKEDSIMIREVWDYNLVEEFALIREIVDKFSYIAMDTEFPGVVLKPVATFKYNNDLNYRTLKENVDLLKLIQVGLTFSDENGNLPTCGTDKFCIWQFNFREFNIGEDIYASESIELLRQCGIDFKKNIEKGIDVVRFGELMMSSGIVLNDAISWVTFHGGYDFGYLVKLLTCKELPLKQADFFKLLYVYFPTVYDIKHLMTFCNGLFGGLNRLAELMGVERVGICHQAGSDSLLTLGSFRKLKERYFPGSTEKYTGVLYGLGVEDGTTT 273
[Close]
BLAST of LR48_mrnaVigan04g224000 vs. DB:Swiss
Match: CAF1B_ARATH (Probable CCR4-associated factor 1 homolog 2 OS=Arabidopsis thaliana OX=3702 GN=CAF1-2 PE=1 SV=1)

HSP 1 Score: 346.665 bits (888), Expect = 1.304e-119
Identity = 166/264 (62.88%), Postives = 207/264 (78.41%), Query Frame = 1 
Query:   22 DSVQIREVWNDNLEEEFALIREIVDEYNYVAMDTEFPGVVLRPVGNFKNIN------DYNYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGSESPCIWQFNFREFNISEDIFASDSIELLRQCGIDFKKNSEKGIDVNRFGELLMSSGIVLNDAVHWVTFHSGYDFGYLLKLLTCRSLPDTQAGFFDLIKMYFPMVYDIKHLMKFCNSLHGGLNKLAELLEVERVGVCHQAGSDSLLTSCTFRKLRDTFFSGSTEKYAGVLYGL 795
            D+++IREVWN NLE+E ALI + +D++ YVAMDTEFPG+V + V    N N      +YNY TLK NV+MLKLIQLGLT SDE GNLPTCG+   CIWQFNFREFN+  D+FA DSIELLR+  ID +KN+E G+D  RF ELLM SG+VLND +HWVTFH GYDFGYLLKLL+ + LP+  + FFD ++ +FP+VYDIK+LM FC +L+GGL K+AELL V+RVG+ HQAGSDSLLT  TF K+++ FF+GS  KY+G L+GL
Sbjct:   12 DTIEIREVWNHNLEQEMALIEQSIDDFPYVAMDTEFPGIVCKTVTANPNPNPYSIHYEYNYDTLKANVNMLKLIQLGLTLSDEKGNLPTCGTNKQCIWQFNFREFNVISDMFALDSIELLRKSAIDLEKNNECGVDAKRFAELLMGSGVVLNDKIHWVTFHCGYDFGYLLKLLSGKELPEEISDFFDQMEKFFPVVYDIKYLMGFCTNLYGGLEKIAELLGVKRVGISHQAGSDSLLTLRTFIKMKEFFFTGSLLKYSGFLFGL 275
[Close]
BLAST of LR48_mrnaVigan04g224000 vs. DB:Swiss
Match: CNOT7_MOUSE (CCR4-NOT transcription complex subunit 7 OS=Mus musculus OX=10090 GN=Cnot7 PE=1 SV=1)

HSP 1 Score: 301.597 bits (771), Expect = 7.456e-102
Identity = 149/272 (54.78%), Postives = 199/272 (73.16%), Query Frame = 1 
Query:   25 SVQIREVWNDNLEEEFALIREIVDEYNYVAMDTEFPGVVLRPVGNFKNINDYNYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGSESPCIWQFNFREFNISEDIFASDSIELLRQCGIDFKKNSEKGIDVNRFGELLMSSGIVLNDAVHWVTFHSGYDFGYLLKLLTCRSLPDTQAGFFDLIKMYFPMVYDIKHLMKFCNSLHGGLNKLAELLEVERVGVCHQAGSDSLLTSCTFRKLRDTFFSGSTE--KYAGVLYGLG-----VENGQTN 819
            S +I EVW  NL+EE   IR+++ +YNYVAMDTEFPGVV RP+G F++  DY YQ L+ NVD+LK+IQLGLTF +E G  P   S     WQFNF+ FN++ED++A DSIELL   GI FKK+ E+GI+   F ELLM+SG+VL + V W++FHSGYDFGYL+K+LT  +LP+ +  FF++++++FP++YD+K+LMK C +L GGL ++AE LE+ER+G  HQAGSDSLLT   F K+R+ FF    +  KY G LYGLG     V+NG  N
Sbjct:    9 SQRICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCNVDLLKIIQLGLTFMNEQGEYPPGTS----TWQFNFK-FNLTEDMYAQDSIELLTTSGIQFKKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFEILRLFFPVIYDVKYLMKSCKNLKGGLQEVAEQLELERIGPQHQAGSDSLLTGMAFFKMREMFFEDHIDDAKYCGHLYGLGSGSSYVQNGTGN 275
[Close]
BLAST of LR48_mrnaVigan04g224000 vs. DB:Swiss
Match: CNOT7_BOVIN (CCR4-NOT transcription complex subunit 7 OS=Bos taurus OX=9913 GN=CNOT7 PE=2 SV=1)

HSP 1 Score: 301.597 bits (771), Expect = 7.456e-102
Identity = 149/272 (54.78%), Postives = 199/272 (73.16%), Query Frame = 1 
Query:   25 SVQIREVWNDNLEEEFALIREIVDEYNYVAMDTEFPGVVLRPVGNFKNINDYNYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGSESPCIWQFNFREFNISEDIFASDSIELLRQCGIDFKKNSEKGIDVNRFGELLMSSGIVLNDAVHWVTFHSGYDFGYLLKLLTCRSLPDTQAGFFDLIKMYFPMVYDIKHLMKFCNSLHGGLNKLAELLEVERVGVCHQAGSDSLLTSCTFRKLRDTFFSGSTE--KYAGVLYGLG-----VENGQTN 819
            S +I EVW  NL+EE   IR+++ +YNYVAMDTEFPGVV RP+G F++  DY YQ L+ NVD+LK+IQLGLTF +E G  P   S     WQFNF+ FN++ED++A DSIELL   GI FKK+ E+GI+   F ELLM+SG+VL + V W++FHSGYDFGYL+K+LT  +LP+ +  FF++++++FP++YD+K+LMK C +L GGL ++AE LE+ER+G  HQAGSDSLLT   F K+R+ FF    +  KY G LYGLG     V+NG  N
Sbjct:    9 SQRICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCNVDLLKIIQLGLTFMNEQGEYPPGTS----TWQFNFK-FNLTEDMYAQDSIELLTTSGIQFKKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFEILRLFFPVIYDVKYLMKSCKNLKGGLQEVAEQLELERIGPQHQAGSDSLLTGMAFFKMREMFFEDHIDDAKYCGHLYGLGSGSSYVQNGTGN 275
[Close]
BLAST of LR48_mrnaVigan04g224000 vs. DB:Swiss
Match: CNOT7_HUMAN (CCR4-NOT transcription complex subunit 7 OS=Homo sapiens OX=9606 GN=CNOT7 PE=1 SV=3)

HSP 1 Score: 301.597 bits (771), Expect = 7.538e-102
Identity = 149/272 (54.78%), Postives = 199/272 (73.16%), Query Frame = 1 
Query:   25 SVQIREVWNDNLEEEFALIREIVDEYNYVAMDTEFPGVVLRPVGNFKNINDYNYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGSESPCIWQFNFREFNISEDIFASDSIELLRQCGIDFKKNSEKGIDVNRFGELLMSSGIVLNDAVHWVTFHSGYDFGYLLKLLTCRSLPDTQAGFFDLIKMYFPMVYDIKHLMKFCNSLHGGLNKLAELLEVERVGVCHQAGSDSLLTSCTFRKLRDTFFSGSTE--KYAGVLYGLG-----VENGQTN 819
            S +I EVW  NL+EE   IR+++ +YNYVAMDTEFPGVV RP+G F++  DY YQ L+ NVD+LK+IQLGLTF +E G  P   S     WQFNF+ FN++ED++A DSIELL   GI FKK+ E+GI+   F ELLM+SG+VL + V W++FHSGYDFGYL+K+LT  +LP+ +  FF++++++FP++YD+K+LMK C +L GGL ++AE LE+ER+G  HQAGSDSLLT   F K+R+ FF    +  KY G LYGLG     V+NG  N
Sbjct:    9 SQRICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCNVDLLKIIQLGLTFMNEQGEYPPGTS----TWQFNFK-FNLTEDMYAQDSIELLTTSGIQFKKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFEILRLFFPVIYDVKYLMKSCKNLKGGLQEVAEQLELERIGPQHQAGSDSLLTGMAFFKMREMFFEDHIDDAKYCGHLYGLGSGSSYVQNGTGN 275
[Close]
BLAST of LR48_mrnaVigan04g224000 vs. DB:Swiss
Match: CNOT7_CHICK (CCR4-NOT transcription complex subunit 7 OS=Gallus gallus OX=9031 GN=CNOT7 PE=2 SV=1)

HSP 1 Score: 301.597 bits (771), Expect = 7.538e-102
Identity = 149/272 (54.78%), Postives = 199/272 (73.16%), Query Frame = 1 
Query:   25 SVQIREVWNDNLEEEFALIREIVDEYNYVAMDTEFPGVVLRPVGNFKNINDYNYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGSESPCIWQFNFREFNISEDIFASDSIELLRQCGIDFKKNSEKGIDVNRFGELLMSSGIVLNDAVHWVTFHSGYDFGYLLKLLTCRSLPDTQAGFFDLIKMYFPMVYDIKHLMKFCNSLHGGLNKLAELLEVERVGVCHQAGSDSLLTSCTFRKLRDTFFSGSTE--KYAGVLYGLG-----VENGQTN 819
            S +I EVW  NL+EE   IR+++ +YNYVAMDTEFPGVV RP+G F++  DY YQ L+ NVD+LK+IQLGLTF +E G  P   S     WQFNF+ FN++ED++A DSIELL   GI FKK+ E+GI+   F ELLM+SG+VL + V W++FHSGYDFGYL+K+LT  +LP+ +  FF++++++FP++YD+K+LMK C +L GGL ++AE LE+ER+G  HQAGSDSLLT   F K+R+ FF    +  KY G LYGLG     V+NG  N
Sbjct:    9 SQRICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCNVDLLKIIQLGLTFMNEQGEYPPGTS----TWQFNFK-FNLTEDMYAQDSIELLTTSGIQFKKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFEILRLFFPVIYDVKYLMKSCKNLKGGLQEVAEQLELERIGPQHQAGSDSLLTGMAFFKMREMFFEDHIDDAKYCGHLYGLGSGSSYVQNGTGN 275
[Close]
BLAST of LR48_mrnaVigan04g224000 vs. DB:Swiss
Match: CNOT7_DANRE (CCR4-NOT transcription complex subunit 7 OS=Danio rerio OX=7955 GN=cnot7 PE=2 SV=1)

HSP 1 Score: 300.827 bits (769), Expect = 2.015e-101
Identity = 148/272 (54.41%), Postives = 197/272 (72.43%), Query Frame = 1 
Query:   25 SVQIREVWNDNLEEEFALIREIVDEYNYVAMDTEFPGVVLRPVGNFKNINDYNYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGSESPCIWQFNFREFNISEDIFASDSIELLRQCGIDFKKNSEKGIDVNRFGELLMSSGIVLNDAVHWVTFHSGYDFGYLLKLLTCRSLPDTQAGFFDLIKMYFPMVYDIKHLMKFCNSLHGGLNKLAELLEVERVGVCHQAGSDSLLTSCTFRKLRDTFFSGSTE--KYAGVLYGLG-----VENGQTN 819
            S +I EVW  NLEEE   IR++  ++NY+AMDTEFPGVV RP+G F++  DY YQ L+ NVD+LK+IQLGLTF +E G  P   S     WQFNF+ FN++ED++A DSIELL   GI FKK+ E+GI+   F ELLM+SG+VL + V W++FHSGYDFGYL+K+L+   LPD +  FF++++++FP++YD+K+LMK C +L GGL ++AE LE+ER+G  HQAGSDSLLT   F K+R+ FF    +  KY G LYGLG     V+NG  N
Sbjct:    9 SQRICEVWACNLEEEMKRIRQVTRKFNYIAMDTEFPGVVARPIGEFRSNADYQYQLLRCNVDLLKIIQLGLTFMNEQGEYPPGTS----TWQFNFK-FNLTEDMYAQDSIELLTSSGIQFKKHEEEGIETMYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILSNSKLPDEEVDFFEILRLFFPIIYDVKYLMKSCKNLKGGLQEVAEQLELERIGPQHQAGSDSLLTGMAFFKMREMFFEDHIDDAKYCGHLYGLGSGSSYVQNGTGN 275
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BLAST of LR48_mrnaVigan04g224000 vs. DB:Swiss
Match: CNOT7_XENLA (CCR4-NOT transcription complex subunit 7 OS=Xenopus laevis OX=8355 GN=cnot7 PE=1 SV=1)

HSP 1 Score: 298.516 bits (763), Expect = 1.452e-100
Identity = 146/272 (53.68%), Postives = 198/272 (72.79%), Query Frame = 1 
Query:   25 SVQIREVWNDNLEEEFALIREIVDEYNYVAMDTEFPGVVLRPVGNFKNINDYNYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGSESPCIWQFNFREFNISEDIFASDSIELLRQCGIDFKKNSEKGIDVNRFGELLMSSGIVLNDAVHWVTFHSGYDFGYLLKLLTCRSLPDTQAGFFDLIKMYFPMVYDIKHLMKFCNSLHGGLNKLAELLEVERVGVCHQAGSDSLLTSCTFRKLRDTFFSGSTE--KYAGVLYGLG-----VENGQTN 819
            S +I EVW  NL+++   IR+++ +YNYVAMDTEFPGVV RP+G F++  DY YQ L+ NVD+LK+IQLGLTF +E G  P   S     WQFNF+ FN++ED++A DSIELL   GI FKK+ E+GI+   F EL M+SG+VL + V W++FHSGYDFGYL+K+LT  +LP+ +  FF++++++FP++YD+K+LMK C +L GGL ++AE LE+ER+G  HQAGSDSLLT   F K+R+ FF    +  KY G LYGLG     V+NG  N
Sbjct:    9 SQRICEVWACNLDDQMKRIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCNVDLLKIIQLGLTFMNEQGEYPPGTS----TWQFNFK-FNLTEDMYAQDSIELLTSSGIQFKKHEEEGIETQYFAELFMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEVEQDFFEILRLFFPVIYDVKYLMKSCKNLKGGLQEVAEQLELERIGPQHQAGSDSLLTGMAFFKMREMFFEDHIDDAKYCGHLYGLGSGSSYVQNGTGN 275
The following BLAST results are available for this feature:
BLAST of LR48_mrnaVigan04g224000 vs. DB:Swiss
Analysis Date: 2020-05-21 (BLAST: V. angularis Jingnong 6 genome v1.1)
Total hits: 10
Match NameE-valueIdentityDescription
CAF1G_ARATH4.871e-15876.84Probable CCR4-associated factor 1 homolog 7 OS=Ara... [more]
CAF1F_ARATH7.675e-15675.37Probable CCR4-associated factor 1 homolog 6 OS=Ara... [more]
CAF1J_ARATH6.481e-15475.46Probable CCR4-associated factor 1 homolog 10 OS=Ar... [more]
CAF1B_ARATH1.304e-11962.88Probable CCR4-associated factor 1 homolog 2 OS=Ara... [more]
CNOT7_MOUSE7.456e-10254.78CCR4-NOT transcription complex subunit 7 OS=Mus mu... [more]
CNOT7_BOVIN7.456e-10254.78CCR4-NOT transcription complex subunit 7 OS=Bos ta... [more]
CNOT7_HUMAN7.538e-10254.78CCR4-NOT transcription complex subunit 7 OS=Homo s... [more]
CNOT7_CHICK7.538e-10254.78CCR4-NOT transcription complex subunit 7 OS=Gallus... [more]
CNOT7_DANRE2.015e-10154.41CCR4-NOT transcription complex subunit 7 OS=Danio ... [more]
CNOT7_XENLA1.452e-10053.68CCR4-NOT transcription complex subunit 7 OS=Xenopu... [more]
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InterPro
Analysis Name: InterProScan: Vigna angularis Jingnong 6 genome v1.1
Date Performed: 2020-05-21
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006941Ribonuclease CAF1PFAMPF04857CAF1coord: 15..136
e-value: 9.4E-11
score: 41.3
coord: 161..243
e-value: 1.4E-6
score: 27.6
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 1..269
e-value: 6.7E-116
score: 388.3
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 12..265

Sequences
The following sequences are available for this feature:

mRNA sequence

>LR48_mrnaVigan04g224000_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan04g224000_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan04g224000; organism=Vigna angularis; type=mRNA; length=822bp
ATGTCGATTATACCGAAAGGCGATTCGGTTCAAATCAGGGAGGTTTGGAA
CGATAACCTCGAAGAGGAGTTCGCGTTGATCCGCGAAATCGTGGACGAGT
ATAACTACGTGGCGATGGATACCGAGTTCCCCGGCGTGGTACTCCGTCCG
GTGGGGAATTTCAAGAACATCAACGACTACAACTACCAAACGTTGAAGGA
CAACGTCGACATGTTGAAGCTGATCCAATTAGGTCTCACCTTCTCCGACG
AGAACGGGAACCTTCCTACCTGCGGCTCCGAGAGTCCCTGCATCTGGCAA
TTCAACTTTCGCGAGTTCAACATCAGCGAAGACATCTTCGCTAGCGATTC
GATCGAGTTGTTGCGCCAGTGCGGGATCGATTTCAAAAAGAACAGCGAGA
AGGGAATCGACGTGAACCGGTTCGGGGAGCTTCTCATGTCCTCTGGAATC
GTGTTGAACGACGCCGTTCATTGGGTTACCTTTCACAGCGGCTACGATTT
TGGCTACCTCCTTAAGCTGTTGACATGCCGAAGCTTGCCGGATACGCAGG
CTGGGTTCTTCGATTTGATCAAGATGTATTTCCCGATGGTGTATGATATC
AAGCATCTGATGAAGTTCTGCAACAGCCTCCATGGTGGGTTGAACAAGCT
AGCAGAGTTGTTGGAGGTGGAAAGGGTTGGTGTGTGCCATCAGGCTGGGT
CTGATAGTTTACTCACTTCTTGTACATTTAGAAAGTTGAGGGATACATTC
TTCAGTGGCTCAACGGAGAAATATGCTGGTGTCTTGTATGGTTTAGGTGT
TGAGAATGGACAGACTAATTGA
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protein sequence of LR48_mrnaVigan04g224000_Va_Jingnong6_v1.1

>LR48_mrnaVigan04g224000_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan04g224000_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan04g224000_Va_Jingnong6_v1.1; organism=Vigna angularis; type=polypeptide; length=273bp
MSIIPKGDSVQIREVWNDNLEEEFALIREIVDEYNYVAMDTEFPGVVLRP
VGNFKNINDYNYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGSESPCIWQ
FNFREFNISEDIFASDSIELLRQCGIDFKKNSEKGIDVNRFGELLMSSGI
VLNDAVHWVTFHSGYDFGYLLKLLTCRSLPDTQAGFFDLIKMYFPMVYDI
KHLMKFCNSLHGGLNKLAELLEVERVGVCHQAGSDSLLTSCTFRKLRDTF
FSGSTEKYAGVLYGLGVENGQTN
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mRNA from alignment at Chr_4-CM003374.1:31653617..31654438-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>LR48_mrnaVigan04g224000_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan04g224000_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan04g224000; organism=Vigna angularis; type=mRNA; length=822bp; location=Sequence derived from: Chr_4-CM003374.1:31653617..31654438- (Vigna angularis
ATGTCGATTATACCGAAAGGCGATTCGGTTCAAATCAGGGAGGTTTGGAA
CGATAACCTCGAAGAGGAGTTCGCGTTGATCCGCGAAATCGTGGACGAGT
ATAACTACGTGGCGATGGATACCGAGTTCCCCGGCGTGGTACTCCGTCCG
GTGGGGAATTTCAAGAACATCAACGACTACAACTACCAAACGTTGAAGGA
CAACGTCGACATGTTGAAGCTGATCCAATTAGGTCTCACCTTCTCCGACG
AGAACGGGAACCTTCCTACCTGCGGCTCCGAGAGTCCCTGCATCTGGCAA
TTCAACTTTCGCGAGTTCAACATCAGCGAAGACATCTTCGCTAGCGATTC
GATCGAGTTGTTGCGCCAGTGCGGGATCGATTTCAAAAAGAACAGCGAGA
AGGGAATCGACGTGAACCGGTTCGGGGAGCTTCTCATGTCCTCTGGAATC
GTGTTGAACGACGCCGTTCATTGGGTTACCTTTCACAGCGGCTACGATTT
TGGCTACCTCCTTAAGCTGTTGACATGCCGAAGCTTGCCGGATACGCAGG
CTGGGTTCTTCGATTTGATCAAGATGTATTTCCCGATGGTGTATGATATC
AAGCATCTGATGAAGTTCTGCAACAGCCTCCATGGTGGGTTGAACAAGCT
AGCAGAGTTGTTGGAGGTGGAAAGGGTTGGTGTGTGCCATCAGGCTGGGT
CTGATAGTTTACTCACTTCTTGTACATTTAGAAAGTTGAGGGATACATTC
TTCAGTGGCTCAACGGAGAAATATGCTGGTGTCTTGTATGGTTTAGGTGT
TGAGAATGGACAGACTAATTGA
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Coding sequence (CDS) from alignment at Chr_4-CM003374.1:31653617..31654438-

>LR48_mrnaVigan04g224000_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan04g224000_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan04g224000; organism=Vigna angularis; type=CDS; length=822bp; location=Sequence derived from: Chr_4-CM003374.1:31653617..31654438- (Vigna angularis
ATGTCGATTATACCGAAAGGCGATTCGGTTCAAATCAGGGAGGTTTGGAA
CGATAACCTCGAAGAGGAGTTCGCGTTGATCCGCGAAATCGTGGACGAGT
ATAACTACGTGGCGATGGATACCGAGTTCCCCGGCGTGGTACTCCGTCCG
GTGGGGAATTTCAAGAACATCAACGACTACAACTACCAAACGTTGAAGGA
CAACGTCGACATGTTGAAGCTGATCCAATTAGGTCTCACCTTCTCCGACG
AGAACGGGAACCTTCCTACCTGCGGCTCCGAGAGTCCCTGCATCTGGCAA
TTCAACTTTCGCGAGTTCAACATCAGCGAAGACATCTTCGCTAGCGATTC
GATCGAGTTGTTGCGCCAGTGCGGGATCGATTTCAAAAAGAACAGCGAGA
AGGGAATCGACGTGAACCGGTTCGGGGAGCTTCTCATGTCCTCTGGAATC
GTGTTGAACGACGCCGTTCATTGGGTTACCTTTCACAGCGGCTACGATTT
TGGCTACCTCCTTAAGCTGTTGACATGCCGAAGCTTGCCGGATACGCAGG
CTGGGTTCTTCGATTTGATCAAGATGTATTTCCCGATGGTGTATGATATC
AAGCATCTGATGAAGTTCTGCAACAGCCTCCATGGTGGGTTGAACAAGCT
AGCAGAGTTGTTGGAGGTGGAAAGGGTTGGTGTGTGCCATCAGGCTGGGT
CTGATAGTTTACTCACTTCTTGTACATTTAGAAAGTTGAGGGATACATTC
TTCAGTGGCTCAACGGAGAAATATGCTGGTGTCTTGTATGGTTTAGGTGT
TGAGAATGGACAGACTAATTGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR006941RNase_CAF1
IPR036397RNaseH_sf
IPR012337RNaseH-like_sf
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding