LR48_mrnaVigan04g228900

Transcript Overview
NameLR48_mrnaVigan04g228900
Unique NameLR48_mrnaVigan04g228900_Va_Jingnong6_v1.1
TypemRNA
OrganismVigna angularis (Adzuki bean, red mung bean, azuki)
Sequence length1245
Producthypothetical protein
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr_4-CM003374.1supercontigChr_4-CM003374.1:32215458..32216702 +Vigna angularis Jingnong 6 genome v1.1n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Vigna angularis Jingnong 6 genome v1.12020-05-19
InterProScan: Vigna angularis Jingnong 6 genome v1.12020-05-21
BLAST: V. angularis Jingnong 6 genome v1.12020-05-21
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
ascaR547Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ascaR553Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
asasR222Vigna angularis Jingnong 6 genome v1.1Vigna angularis
anasL0115Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anasL0368Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anasL0422Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anasL0840Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ascaiR649Cicer arietinum ICC 4958 genome v2Cicer arietinum
asccR0860Cajanus cajan Asha genome v1.0Cajanus cajan
asccR0875Cajanus cajan Asha genome v1.0Cajanus cajan
ascrR614Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
ascrR628Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
aspsR537Pisum sativum Cameor genome v1aPisum sativum
aspsR543Pisum sativum Cameor genome v1aPisum sativum
aspsR579Pisum sativum Cameor genome v1aPisum sativum
aspvR593Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
aspvR644Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
asvuR528Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
asvuR538Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
astifR576Vicia faba cv. Tiffany genome v1.0Vicia faba
astifR591Vicia faba cv. Tiffany genome v1.0Vicia faba
asvfhR590Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
asvfhR605Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
asvrvR487Vigna radiata cv. VC1973A genome v6.0Vigna radiata
asvrvR510Vigna radiata cv. VC1973A genome v6.0Vigna radiata
asvssR620Vicia sativa cv. Studenica genome v1.0Vicia sativa
asvssR659Vicia sativa cv. Studenica genome v1.0Vicia sativa
asvuaR495Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
asvuaR512Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
ascanR492Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
ascanR500Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum

Orthologs
Gene/TranscriptAssemblySpecies
rna-TanjilR_12466Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
rna-TanjilR_30680Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
rna-XM_004498771.3Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
Phvul.001G043800.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
jg35616.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Cr_09629.1Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
rna-TanjilR_30274Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Vigun09g218200.5Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
Vfaba.Hedin2.R1.3g209040.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
rna-KK1_009518Cajanus cajan Asha genome v1.0Cajanus cajan
Phvul.009G084700.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
evm.model.Chr09.1541Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
rna-KK1_035682Cajanus cajan Asha genome v1.0Cajanus cajan
Vfaba.Tiffany.R1.3g172800.1Vicia faba cv. Tiffany genome v1.0Vicia faba
rna-XM_014643435.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
Ca_09116Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
evm.model.Chr08.277Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
Psat6g024360.1Pisum sativum Cameor genome v1aPisum sativum
rna-TanjilR_09873Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
LR48_mrnaVigan07g247300Vigna angularis Jingnong 6 genome v1.1Vigna angularis
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
gene-LR48_Vigan04g228900gene-LR48_Vigan04g228900_Va_Jingnong6_v1.1Vigna angularisgene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
LR48_mrnaVigan04g228900LR48_mrnaVigan04g228900_Va_Jingnong6_v1.1-proteinVigna angularispolypeptide
LR48_mrnaVigan04g228900_Va_Jingnong6_v1.1LR48_mrnaVigan04g228900_Va_Jingnong6_v1.1Vigna angularispolypeptide


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
LR48_mrnaVigan04g228900_Va_Jingnong6_v1.1-start_codon-Chr_4-CM003374.1_Va_Jingnong6_v1.1-1589992784:32215458..32215460LR48_mrnaVigan04g228900_Va_Jingnong6_v1.1-start_codon-Chr_4-CM003374.1_Va_Jingnong6_v1.1-1589992784:32215458..32215460Vigna angularisstart_codon


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
LR48_mrnaVigan04g228900_Va_Jingnong6_v1.1-exon-Chr_4-CM003374.1_Va_Jingnong6_v1.1-1589992784:32215458..32216702LR48_mrnaVigan04g228900_Va_Jingnong6_v1.1-exon-Chr_4-CM003374.1_Va_Jingnong6_v1.1-1589992784:32215458..32216702Vigna angularisexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
LR48_mrnaVigan04g228900_Va_Jingnong6_v1.1-CDS-Chr_4-CM003374.1_Va_Jingnong6_v1.1-1589992784:32215458..32216702LR48_mrnaVigan04g228900_Va_Jingnong6_v1.1-CDS-Chr_4-CM003374.1_Va_Jingnong6_v1.1-1589992784:32215458..32216702Vigna angularisCDS


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
LR48_mrnaVigan04g228900_Va_Jingnong6_v1.1-stop_codon-Chr_4-CM003374.1_Va_Jingnong6_v1.1-1589992784:32216700..32216702LR48_mrnaVigan04g228900_Va_Jingnong6_v1.1-stop_codon-Chr_4-CM003374.1_Va_Jingnong6_v1.1-1589992784:32216700..32216702Vigna angularisstop_codon


Homology
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BLAST of LR48_mrnaVigan04g228900 vs. DB:Swiss
Match: FBX13_ARATH (F-box only protein 13 OS=Arabidopsis thaliana OX=3702 GN=FBX13 PE=2 SV=2)

HSP 1 Score: 419.468 bits (1077), Expect = 2.138e-143
Identity = 225/413 (54.48%), Postives = 293/413 (70.94%), Query Frame = 1 
Query:   43 KRKS-PEDENRVLF--NTFSLDDLNEDLFERILSWLPTSTFFRLSSVCKRWKSVADSASFKLACSHIPSRDPWFLMVAPNLNQS-VIFDSAESAWKRLNHPPLLQEESNQHCMPVAASGGLICHR-KLSGNFIVSNPVTGSCTEXXXXXXXXXXXXNAIVMSTACKDQLSFKIVLVFGELPNLLFKVYDSRSDCWDDDIALRR-KTEDSSMEHD-STDDNVVYFLSKAG--IVVASNMQRSPSKQYSSVITNKDGQDIVYFLSSSGKVVACNLTCKCFSEYPRLLPVFSEYSIDVVECNGEMLVVLLSEFLETATLRVWKYDEANRGWHQIAAMPAADSHEWYGKKADINCV-GAGNQILICLNS--PDL-CTYILCDLETNKWVQLPKCCINGELIDFMSAFSFEPRIEASV 1242
            KRKS  E+E+RV F  + F +DDLN+D+ ER+LSWLPTS FFR+SSVCKRWKS   S SFKLACS IP+RDPWF M+  + N S  +FDS E++WK LN    L     Q  +PVA+SGGL+C+R  +SG+F++ NP+TGS  ++P      ++PL A+ M+T      S+ +V + GE+PNL FK+Y+S +D W  D  L   K  DSS+  D  TD   VYFLSK G  +V ++N+QRSPSKQYSSVIT  D  +IVYFLSS G +VAC+LT +CF+E P+LLP F EYSID+VEC G M V+LLSEF E+A+LR+W+ D  NR W Q+  +P A SHE YGKK DINCV GAGN+IL+C N+  P++ C Y + DL   +W +LPKC  +GE +DF+SA SF+PRIEA+V
Sbjct:   47 KRKSRDEEEDRVSFFASEFPMDDLNDDVLERVLSWLPTSCFFRMSSVCKRWKSSQTSKSFKLACSQIPTRDPWFFMIDNDSNSSSFVFDSTENSWKNLNRRDFLHHH-RQDFIPVASSGGLLCYRCSISGDFLLRNPLTGSSRDIPSQDNNNNKPLQAVAMTTTTVTPSSYTLVTISGEIPNLSFKIYESNADSWSKDQELESVKNNDSSLHDDYDTDSGTVYFLSKQGNVVVASNNLQRSPSKQYSSVITVTDEAEIVYFLSSYGTIVACDLTKRCFTELPKLLPPFLEYSIDLVECEGTMYVILLSEFFESASLRIWRLDN-NREWVQVGMLPPALSHELYGKKGDINCVGGAGNKILVCFNASPPEVYCRYFVYDLVAEEWNELPKCFKDGEAVDFVSALSFQPRIEATV 457
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BLAST of LR48_mrnaVigan04g228900 vs. DB:Swiss
Match: FBX6_ARATH (F-box only protein 6 OS=Arabidopsis thaliana OX=3702 GN=FBX6 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 1.769e-25
Identity = 93/368 (25.27%), Postives = 168/368 (45.65%), Query Frame = 1 
Query:   97 DDLNEDLFERILSWLPTSTFFRLSSVCKRWKSVADSASFKLACSHIPSRDPWFLMVA-PNLNQSVIFDSAESAWKRLNHPPLLQEESNQHCMPVAASGGLICHRKLSG-NFIVSNPVTGSCTEXXXXXXXXXXXXNAIVMSTACKDQLSFKIVLVF--GELPNLLFKVYDSRSDCWDDDIALRRKTEDSSMEHDSTDDNVVYFLSKAGIVVASNMQRSPSKQYSSVITNKDGQDIVYFLSSSGKVVACNLTCKCFSEYPRLLPVFSEYSIDVVECNGE--MLVVLLSEFLETATLRVWKYDEANRGWHQIAAMPAADSHEWYGKKADINCVG-AGNQILICLNSPDLCTYILCDLETNKWVQLPKCCI 1179
             +  +DLFE ++S LP +TFF+  +VC++W ++ DS SF    + +P   PWF  +   N+N   ++D +   W   +HP +         +P+A++GGL+C   +   NF VSNP+T S  ELP         +   +          +K++ V   GE     ++VYDS S+ W      +R T  S+++                + V  N +  P   +S+         + + L+    +++ ++    + ++  ++P   + S   +   GE  MLV LL++   T    +W+  +    W ++  MP     E+YGK   +NC+G  G  IL+ L S  +   I  +  T +W ++P C +
Sbjct:  118 QEFPQDLFEDVVSRLPMATFFQFRAVCRKWNALIDSDSFSRCFTELPQTIPWFYTITHENVNSGQVYDPSLKKW---HHPIIPALPKKSIVLPMASAGGLVCFLDIGHRNFYVSNPLTKSFRELPARSFKVWSRVAVGMTLNGNSTSHGYKVLWVGCEGE-----YEVYDSLSNVWT-----KRGTIPSNIK----------------LPVLLNFKSQPVAIHST---------LYFMLTDPEGILSYDMVSGKWKQF--IIPGPPDLSDHTLAACGERLMLVGLLTKNAATCVC-IWELQKMTLLWKEVDRMPNIWCLEFYGKHIRMNCLGNKGCLILLSLRSRQMNRLITYNAVTREWTKVPGCTV 444
[Close]
BLAST of LR48_mrnaVigan04g228900 vs. DB:Swiss
Match: FBK77_ARATH (F-box/kelch-repeat protein At3g61590 OS=Arabidopsis thaliana OX=3702 GN=At3g61590 PE=1 SV=1)

HSP 1 Score: 64.6994 bits (156), Expect = 4.596e-10
Identity = 50/138 (36.23%), Postives = 70/138 (50.72%), Query Frame = 1 
Query:   46 RKSPEDENRVLFNTFSLDDL-NEDLFERILSWLPTSTFFRLSSVCKRWKSVADSASFKLACSHIP-SRDPWFLMVAPNLNQS-VIFDSAESAWKRLNHPPLLQEESNQHCMPVAASGGLICH--RKLSGNFIVSNPVT 444
            R+  +DE +V   TFS+D L  +DL ERILS+LP ++ FR  +VCKRW  +  S  F    S+   S+ PW+ M     + S   +D     W   + P +  E SN     VA+S GL+C           VSNP+T
Sbjct:   25 REQSDDEAKV--ETFSMDSLLPDDLLERILSFLPIASIFRAGTVCKRWNEIVSSRRFLCNFSNNSVSQRPWYFMFTTTDDPSGYAYDPIIRKWYSFDLPCI--ETSNWF---VASSCGLVCFMDNDCRNKIYVSNPIT 155
[Close]
BLAST of LR48_mrnaVigan04g228900 vs. DB:Swiss
Match: FK111_ARATH (F-box/kelch-repeat protein At5g15710 OS=Arabidopsis thaliana OX=3702 GN=At5g15710 PE=2 SV=1)

HSP 1 Score: 59.3066 bits (142), Expect = 3.255e-8
Identity = 96/412 (23.30%), Postives = 157/412 (38.11%), Query Frame = 1 
Query:   25 QSVVSLKRKSPEDENRVLFNTFSLDD----------LNEDLFERILSWLPTSTFFRLSSVCKRWKSVADSASFKLACSHIPSRDPWFLMV---APNLNQSVIFDSAESAWKRLNH---PPLLQEESNQHCMPVAASGGLICHRKLSG---NFIVSNPVTGSCTEXXXXXXXXXXXXNAIVMSTACKDQLSFKIVL---VFGELPNLLFKVYDSRSDCWD-DDIALRRKTEDSSMEHDSTDDNVVYF--LSKAGIVVASNMQRSPSKQYSSVITNKDGQDIVYFLSSSGKVVACNLTCKCFSEYPRLLPVFSEYSIDVVECNGEMLVVLLSEFLETATLRVWKYDEANRGWHQIAAMPAADSHEWYGKKAD-INCVGAGNQILICLNSPDLCTYILCDLETNKWVQLPKCCIN 1182
            Q VV  K +  E+E    F    + D          L EDL   IL+ +P    FR+ SVCK+W  +    SF    S++ S  P  L     +P + Q  +F      W ++     PP            V +SGGL+C   L G     +V NP+  S      L +  +     ++M     D+ SFK++    ++G+  +L  +VYDS++D W    I        S M +    D+ +Y   LS  G++    M R  S Q+  +                             +++PR L     Y +   +     LV  +  +    ++R+W+ D     W +I+ MP           A+   C G  N  LIC  S +    +L +++   W  +  C + 
Sbjct:   71 QKVVKTKPRGLEEETVASFGKQVVADVQMEDGIWAMLPEDLLNEILARVPPFMIFRIRSVCKKWNLILQDNSFLKFHSNVSSHGPCLLTFWKNSPQIPQCSVFSLPLKTWYKIPFTFLPPW-------AFWLVGSSGGLVCFSGLDGLTFRTLVCNPLMQSWR---TLPSMHYNQQRQLIMVVDRSDK-SFKVIATSDIYGD-KSLPTEVYDSKTDKWSLHQIMPAVNLCSSKMAY---CDSRLYLETLSPLGLM----MYRLDSGQWEHIP----------------------------AKFPRSL--LDGYLVAGTQ-KRLFLVGRIGLYSTLQSMRIWELDHTKVSWVEISRMPPKYFRALLRLSAERFECFGQDN--LICFTSWNQGKGLLYNVDKKIWSWISGCALQ 430
The following BLAST results are available for this feature:
BLAST of LR48_mrnaVigan04g228900 vs. DB:Swiss
Analysis Date: 2020-05-21 (BLAST: V. angularis Jingnong 6 genome v1.1)
Total hits: 4
Match NameE-valueIdentityDescription
FBX13_ARATH2.138e-14354.48F-box only protein 13 OS=Arabidopsis thaliana OX=3... [more]
FBX6_ARATH1.769e-2525.27F-box only protein 6 OS=Arabidopsis thaliana OX=37... [more]
FBK77_ARATH4.596e-1036.23F-box/kelch-repeat protein At3g61590 OS=Arabidopsi... [more]
FK111_ARATH3.255e-823.30F-box/kelch-repeat protein At5g15710 OS=Arabidopsi... [more]
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InterPro
Analysis Name: InterProScan: Vigna angularis Jingnong 6 genome v1.1
Date Performed: 2020-05-21
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001810F-box domainSMARTSM00256fbox_2coord: 35..75
e-value: 1.1E-5
score: 34.9
IPR001810F-box domainPFAMPF00646F-boxcoord: 30..72
e-value: 4.7E-10
score: 39.0
IPR001810F-box domainPROSITEPS50181FBOXcoord: 29..74
score: 11.379
NoneNo IPR availableGENE3D1.20.1280.50coord: 26..71
e-value: 1.7E-7
score: 33.1
IPR036047F-box-like domain superfamilySUPERFAMILY81383F-box domaincoord: 29..87
IPR011043Galactose oxidase/kelch, beta-propellerSUPERFAMILY50965Galactose oxidase, central domaincoord: 95..392

Sequences
The following sequences are available for this feature:

mRNA sequence

>LR48_mrnaVigan04g228900_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan04g228900_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan04g228900; organism=Vigna angularis; type=mRNA; length=1245bp
ATGGAATGTAATTATCAGTGTGGCCAAAGTGTTGTGAGCTTGAAGAGAAA
GTCCCCAGAAGATGAAAATCGTGTACTCTTCAACACCTTTTCTCTGGATG
ACCTTAATGAAGATCTCTTTGAAAGGATACTTTCATGGCTTCCAACTTCC
ACATTCTTTCGCCTAAGTTCTGTGTGCAAAAGATGGAAATCGGTTGCTGA
TTCTGCCAGTTTCAAGCTTGCCTGCTCTCACATTCCCTCGAGGGATCCTT
GGTTTTTAATGGTTGCTCCCAACCTTAATCAATCTGTTATCTTTGATTCT
GCTGAGAGCGCTTGGAAGAGACTAAACCACCCACCTCTTCTGCAAGAGGA
ATCTAACCAACACTGCATGCCGGTTGCAGCCTCTGGCGGCTTGATTTGCC
ACCGGAAATTATCAGGAAATTTCATTGTGAGCAACCCCGTGACAGGATCT
TGTACAGAACTTCCCCCACTTCACGCCCCGCAGCATCAACCTCTCAATGC
CATTGTGATGAGCACAGCTTGCAAAGACCAACTCTCCTTCAAAATTGTCT
TAGTCTTTGGTGAACTTCCAAATCTCTTGTTCAAAGTCTACGATTCAAGA
TCTGACTGTTGGGATGATGATATTGCTTTGAGGAGAAAGACAGAAGACAG
TTCAATGGAACATGATTCTACTGATGACAATGTTGTGTACTTCCTCAGCA
AGGCTGGAATTGTTGTGGCAAGCAACATGCAGAGAAGCCCCTCTAAGCAA
TATTCATCAGTTATTACCAACAAAGATGGCCAAGACATAGTGTATTTTCT
TAGCTCCTCAGGGAAAGTGGTAGCATGCAATTTAACGTGCAAGTGCTTCT
CTGAGTACCCCAGGTTGTTACCTGTTTTTAGTGAGTATTCCATTGATGTT
GTAGAGTGCAATGGGGAGATGCTAGTTGTTTTGTTATCAGAATTCTTGGA
GACTGCAACTCTTAGAGTATGGAAATATGACGAGGCTAACAGAGGGTGGC
ACCAGATCGCGGCAATGCCTGCAGCAGATTCTCATGAGTGGTATGGAAAG
AAAGCAGACATCAATTGTGTTGGAGCTGGAAACCAAATATTGATATGCTT
GAATTCCCCTGATCTATGCACTTATATTCTGTGTGATTTGGAAACCAACA
AGTGGGTTCAATTGCCAAAATGTTGCATAAATGGAGAACTCATAGACTTT
ATGTCTGCCTTTTCATTCGAGCCTCGAATAGAGGCTTCTGTATGA
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protein sequence of LR48_mrnaVigan04g228900_Va_Jingnong6_v1.1

>LR48_mrnaVigan04g228900_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan04g228900_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan04g228900_Va_Jingnong6_v1.1; organism=Vigna angularis; type=polypeptide; length=414bp
MECNYQCGQSVVSLKRKSPEDENRVLFNTFSLDDLNEDLFERILSWLPTS
TFFRLSSVCKRWKSVADSASFKLACSHIPSRDPWFLMVAPNLNQSVIFDS
AESAWKRLNHPPLLQEESNQHCMPVAASGGLICHRKLSGNFIVSNPVTGS
CTELPPLHAPQHQPLNAIVMSTACKDQLSFKIVLVFGELPNLLFKVYDSR
SDCWDDDIALRRKTEDSSMEHDSTDDNVVYFLSKAGIVVASNMQRSPSKQ
YSSVITNKDGQDIVYFLSSSGKVVACNLTCKCFSEYPRLLPVFSEYSIDV
VECNGEMLVVLLSEFLETATLRVWKYDEANRGWHQIAAMPAADSHEWYGK
KADINCVGAGNQILICLNSPDLCTYILCDLETNKWVQLPKCCINGELIDF
MSAFSFEPRIEASV
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mRNA from alignment at Chr_4-CM003374.1:32215458..32216702+

Legend: polypeptidestart_codonexonCDSstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>LR48_mrnaVigan04g228900_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan04g228900_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan04g228900; organism=Vigna angularis; type=mRNA; length=1245bp; location=Sequence derived from: Chr_4-CM003374.1:32215458..32216702+ (Vigna angularis
ATGGAATGTAATTATCAGTGTGGCCAAAGTGTTGTGAGCTTGAAGAGAAA
GTCCCCAGAAGATGAAAATCGTGTACTCTTCAACACCTTTTCTCTGGATG
ACCTTAATGAAGATCTCTTTGAAAGGATACTTTCATGGCTTCCAACTTCC
ACATTCTTTCGCCTAAGTTCTGTGTGCAAAAGATGGAAATCGGTTGCTGA
TTCTGCCAGTTTCAAGCTTGCCTGCTCTCACATTCCCTCGAGGGATCCTT
GGTTTTTAATGGTTGCTCCCAACCTTAATCAATCTGTTATCTTTGATTCT
GCTGAGAGCGCTTGGAAGAGACTAAACCACCCACCTCTTCTGCAAGAGGA
ATCTAACCAACACTGCATGCCGGTTGCAGCCTCTGGCGGCTTGATTTGCC
ACCGGAAATTATCAGGAAATTTCATTGTGAGCAACCCCGTGACAGGATCT
TGTACAGAACTTCCCCCACTTCACGCCCCGCAGCATCAACCTCTCAATGC
CATTGTGATGAGCACAGCTTGCAAAGACCAACTCTCCTTCAAAATTGTCT
TAGTCTTTGGTGAACTTCCAAATCTCTTGTTCAAAGTCTACGATTCAAGA
TCTGACTGTTGGGATGATGATATTGCTTTGAGGAGAAAGACAGAAGACAG
TTCAATGGAACATGATTCTACTGATGACAATGTTGTGTACTTCCTCAGCA
AGGCTGGAATTGTTGTGGCAAGCAACATGCAGAGAAGCCCCTCTAAGCAA
TATTCATCAGTTATTACCAACAAAGATGGCCAAGACATAGTGTATTTTCT
TAGCTCCTCAGGGAAAGTGGTAGCATGCAATTTAACGTGCAAGTGCTTCT
CTGAGTACCCCAGGTTGTTACCTGTTTTTAGTGAGTATTCCATTGATGTT
GTAGAGTGCAATGGGGAGATGCTAGTTGTTTTGTTATCAGAATTCTTGGA
GACTGCAACTCTTAGAGTATGGAAATATGACGAGGCTAACAGAGGGTGGC
ACCAGATCGCGGCAATGCCTGCAGCAGATTCTCATGAGTGGTATGGAAAG
AAAGCAGACATCAATTGTGTTGGAGCTGGAAACCAAATATTGATATGCTT
GAATTCCCCTGATCTATGCACTTATATTCTGTGTGATTTGGAAACCAACA
AGTGGGTTCAATTGCCAAAATGTTGCATAAATGGAGAACTCATAGACTTT
ATGTCTGCCTTTTCATTCGAGCCTCGAATAGAGGCTTCTGTATGA
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Coding sequence (CDS) from alignment at Chr_4-CM003374.1:32215458..32216702+

>LR48_mrnaVigan04g228900_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan04g228900_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan04g228900; organism=Vigna angularis; type=CDS; length=1245bp; location=Sequence derived from: Chr_4-CM003374.1:32215458..32216702+ (Vigna angularis
ATGGAATGTAATTATCAGTGTGGCCAAAGTGTTGTGAGCTTGAAGAGAAA
GTCCCCAGAAGATGAAAATCGTGTACTCTTCAACACCTTTTCTCTGGATG
ACCTTAATGAAGATCTCTTTGAAAGGATACTTTCATGGCTTCCAACTTCC
ACATTCTTTCGCCTAAGTTCTGTGTGCAAAAGATGGAAATCGGTTGCTGA
TTCTGCCAGTTTCAAGCTTGCCTGCTCTCACATTCCCTCGAGGGATCCTT
GGTTTTTAATGGTTGCTCCCAACCTTAATCAATCTGTTATCTTTGATTCT
GCTGAGAGCGCTTGGAAGAGACTAAACCACCCACCTCTTCTGCAAGAGGA
ATCTAACCAACACTGCATGCCGGTTGCAGCCTCTGGCGGCTTGATTTGCC
ACCGGAAATTATCAGGAAATTTCATTGTGAGCAACCCCGTGACAGGATCT
TGTACAGAACTTCCCCCACTTCACGCCCCGCAGCATCAACCTCTCAATGC
CATTGTGATGAGCACAGCTTGCAAAGACCAACTCTCCTTCAAAATTGTCT
TAGTCTTTGGTGAACTTCCAAATCTCTTGTTCAAAGTCTACGATTCAAGA
TCTGACTGTTGGGATGATGATATTGCTTTGAGGAGAAAGACAGAAGACAG
TTCAATGGAACATGATTCTACTGATGACAATGTTGTGTACTTCCTCAGCA
AGGCTGGAATTGTTGTGGCAAGCAACATGCAGAGAAGCCCCTCTAAGCAA
TATTCATCAGTTATTACCAACAAAGATGGCCAAGACATAGTGTATTTTCT
TAGCTCCTCAGGGAAAGTGGTAGCATGCAATTTAACGTGCAAGTGCTTCT
CTGAGTACCCCAGGTTGTTACCTGTTTTTAGTGAGTATTCCATTGATGTT
GTAGAGTGCAATGGGGAGATGCTAGTTGTTTTGTTATCAGAATTCTTGGA
GACTGCAACTCTTAGAGTATGGAAATATGACGAGGCTAACAGAGGGTGGC
ACCAGATCGCGGCAATGCCTGCAGCAGATTCTCATGAGTGGTATGGAAAG
AAAGCAGACATCAATTGTGTTGGAGCTGGAAACCAAATATTGATATGCTT
GAATTCCCCTGATCTATGCACTTATATTCTGTGTGATTTGGAAACCAACA
AGTGGGTTCAATTGCCAAAATGTTGCATAAATGGAGAACTCATAGACTTT
ATGTCTGCCTTTTCATTCGAGCCTCGAATAGAGGCTTCTGTATGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR001810F-box_dom
IPR036047F-box-like_dom_sf
IPR011043Gal_Oxase/kelch_b-propeller
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding