LR48_mrnaVigan04g235600

Transcript Overview
NameLR48_mrnaVigan04g235600
Unique NameLR48_mrnaVigan04g235600_Va_Jingnong6_v1.1
TypemRNA
OrganismVigna angularis (Adzuki bean, red mung bean, azuki)
Sequence length1019
Producthypothetical protein
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr_4-CM003374.1supercontigChr_4-CM003374.1:32847636..32848654 +Vigna angularis Jingnong 6 genome v1.1n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Vigna angularis Jingnong 6 genome v1.12020-05-19
InterProScan: Vigna angularis Jingnong 6 genome v1.12020-05-21
BLAST: V. angularis Jingnong 6 genome v1.12020-05-21
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
gene-LR48_Vigan04g235600gene-LR48_Vigan04g235600_Va_Jingnong6_v1.1Vigna angularisgene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
LR48_mrnaVigan04g235600LR48_mrnaVigan04g235600_Va_Jingnong6_v1.1-proteinVigna angularispolypeptide
LR48_mrnaVigan04g235600_Va_Jingnong6_v1.1LR48_mrnaVigan04g235600_Va_Jingnong6_v1.1Vigna angularispolypeptide


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
LR48_mrnaVigan04g235600_Va_Jingnong6_v1.1-start_codon-Chr_4-CM003374.1_Va_Jingnong6_v1.1-1589992784:32847636..32847638LR48_mrnaVigan04g235600_Va_Jingnong6_v1.1-start_codon-Chr_4-CM003374.1_Va_Jingnong6_v1.1-1589992784:32847636..32847638Vigna angularisstart_codon


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
LR48_mrnaVigan04g235600_Va_Jingnong6_v1.1-exon-Chr_4-CM003374.1_Va_Jingnong6_v1.1-1589992784:32847636..32847660LR48_mrnaVigan04g235600_Va_Jingnong6_v1.1-exon-Chr_4-CM003374.1_Va_Jingnong6_v1.1-1589992784:32847636..32847660Vigna angularisexon
LR48_mrnaVigan04g235600_Va_Jingnong6_v1.1-exon-Chr_4-CM003374.1_Va_Jingnong6_v1.1-1589992784:32847753..32848654LR48_mrnaVigan04g235600_Va_Jingnong6_v1.1-exon-Chr_4-CM003374.1_Va_Jingnong6_v1.1-1589992784:32847753..32848654Vigna angularisexon


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
LR48_mrnaVigan04g235600_Va_Jingnong6_v1.1-intron-Chr_4-CM003374.1_Va_Jingnong6_v1.1-1589992784:32847661..32847752LR48_mrnaVigan04g235600_Va_Jingnong6_v1.1-intron-Chr_4-CM003374.1_Va_Jingnong6_v1.1-1589992784:32847661..32847752Vigna angularisintron


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS2292CDS2292_Va_Jingnong6_v1.1Vigna angularisCDS


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
LR48_mrnaVigan04g235600_Va_Jingnong6_v1.1-stop_codon-Chr_4-CM003374.1_Va_Jingnong6_v1.1-1589992784:32848652..32848654LR48_mrnaVigan04g235600_Va_Jingnong6_v1.1-stop_codon-Chr_4-CM003374.1_Va_Jingnong6_v1.1-1589992784:32848652..32848654Vigna angularisstop_codon


Homology
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BLAST of LR48_mrnaVigan04g235600 vs. DB:Swiss
Match: NHL13_ARATH (NDR1/HIN1-like protein 13 OS=Arabidopsis thaliana OX=3702 GN=NHL13 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.578e-12
Identity = 68/231 (29.44%), Postives = 115/231 (49.78%), Query Frame = -1 
Query:   34 PNRQVYR--PQSHYHRRGQ----RSHRNLCCCCCFWXXXXXXXXXXXXXXXXXXXXXXYRPHRPEFSVTNLRIVKMNLTSSAD-SPSHLVTLFNLTLIAKNPNNHLIFFYD-PFAVTVFSNSVPVGNGSVTAFTSDKNNQTSLRAVLSGSQDLDTDSLTNLRSGLKMKKGFPVEIQMDTKVKMKMDWLKSKKVGIRVTCDGIRGTVPAGKSPAVASVVDSECKVDLRIKIW 702
            P  Q+YR  P  + HR  Q    +++R+ C CC    +  V  + +LA I  A LY++YRP  P++S+    +  +NL S++  SPS     FN+T+ ++N N  +  +Y+   +V V+ N V + NG +  F     N T ++ VLSGS+   T  +         KK  P ++++   VK+K   +K+  + + V CD     V   K  A + +V  +C  D  + +W
Sbjct:   42 PKDQIYRIPPPENAHRFEQLSRKKTNRSNCRCCFCSFLAAVFILIVLAGISFAVLYLIYRPEAPKYSIEGFSVSGINLNSTSPISPS-----FNVTVRSRNGNGKIGVYYEKESSVDVYYNDVDISNGVMPVFYQPAKNVTVVKLVLSGSKIQLTSGMRKEMRNEVSKKTVPFKLKIKAPVKIKFGSVKTWTMIVNVDCD-----VTVDKLTAPSRIVSRKCSHD--VDLW 260
[Close]
BLAST of LR48_mrnaVigan04g235600 vs. DB:Swiss
Match: NHL6_ARATH (NDR1/HIN1-like protein 6 OS=Arabidopsis thaliana OX=3702 GN=NHL6 PE=1 SV=1)

HSP 1 Score: 60.077 bits (144), Expect = 3.642e-9
Identity = 44/168 (26.19%), Postives = 76/168 (45.24%), Query Frame = -1 
Query:   43 RPHRPEFSVTNLRIVKMNLTSSADSPSHLVTLFNLTLIAKNPNNHL-IFFYDPFAVTVFSNSVPVGNGSVTAFTSDKNNQTSLRAVLSGSQDLDTDSLTNLRSGLKMKKGFPVEIQMDTKVKMKMDWLKSKKVGIRVTCDGIRGTVPAGKSPAVASVVDSECKVDLRI 543
            +P  P++S+  L++ +  L       S L T FN+T+ AKNPN  + I++ D   +TV+     + NGS+  F     N T +   ++G     +   T L    +     P+ I+++  V++K   LK  +V   V C     ++       V  +  S CK  LR+
Sbjct:   92 KPKLPDYSIDRLQLTRFALNQD----SSLTTAFNVTITAKNPNEKIGIYYEDGSKITVWYMEHQLSNGSLPKFYQGHENTTVIYVEMTGQTQNASGLRTTLEEQQQRTGNIPLRIRVNQPVRVKFGKLKLFEVRFLVRCGVFVDSLATNN---VIKIQSSSCKFRLRL 252
[Close]
BLAST of LR48_mrnaVigan04g235600 vs. DB:Swiss
Match: NHL26_ARATH (NDR1/HIN1-like protein 26 OS=Arabidopsis thaliana OX=3702 GN=NHL26 PE=2 SV=1)

HSP 1 Score: 52.7582 bits (125), Expect = 6.099e-7
Identity = 44/166 (26.51%), Postives = 70/166 (42.17%), Query Frame = -1 
Query:   49 PHRPEFSVTNLRIVKMNLTSSADSPSHLV-TLFNLTLIAKNPNNHLIFFYDPFAV-TVFSNSVPVGNGSVTAFTSDKNNQTSLRAVLSGSQDLDTDSLTNLRSGLKMKKGFPVEIQMDTKVKMKMDWLKSKKVGIRVTCDGIRGTVPAGKSPAVASVVDSECKVDL 540
            P RPEFS+T   I  +NLT+S+   +HL+ +   LTL +KNPN  +  +YD   V   +         S+  F         L A L G++     S     S  +      + ++MD K++ K+    S      V C  I        +P +AS+  + C   +
Sbjct:   51 PERPEFSLTEADIYSLNLTTSS---THLLNSSVQLTLFSKNPNKKVGIYYDKLLVYAAYRGQQITSEASLPPFYQSHEEINLLTAFLQGTELPVAQSFGYQISRERSTGKIIIGMKMDGKLRWKIGTWVSGAYRFNVNCLAIVAFGMNMTTPPLASLQGTRCSTTI 213
The following BLAST results are available for this feature:
BLAST of LR48_mrnaVigan04g235600 vs. DB:Swiss
Analysis Date: 2020-05-21 (BLAST: V. angularis Jingnong 6 genome v1.1)
Total hits: 3
Match NameE-valueIdentityDescription
NHL13_ARATH8.578e-1229.44NDR1/HIN1-like protein 13 OS=Arabidopsis thaliana ... [more]
NHL6_ARATH3.642e-926.19NDR1/HIN1-like protein 6 OS=Arabidopsis thaliana O... [more]
NHL26_ARATH6.099e-726.51NDR1/HIN1-like protein 26 OS=Arabidopsis thaliana ... [more]
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InterPro
Analysis Name: InterProScan: Vigna angularis Jingnong 6 genome v1.1
Date Performed: 2020-05-21
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 271..308

Sequences
The following sequences are available for this feature:

mRNA sequence

>LR48_mrnaVigan04g235600_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan04g235600_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan04g235600; organism=Vigna angularis; type=mRNA; length=1019bp
ATGATGGGACTGATTATTGAAATCGGTAAGATGTAGATGATAATAACGAA
TTTTGCAATAATAATAGCAATCGATCAACCAAAAagacattattattttt
atttttattattaaaaggaaAACTTCCAGATCTTGATTCGAAGATCCACC
TTACACTCGGAATCCACCACGGAAGCCACTGCCGGAGACTTGCCGGCGGG
AACCGTTCCTCTGATTCCGTCGCACGTTACTCGAATTCCCACCTTCTTGC
TCTTGAGCCAatccatcttcatcttcaccttGGTATCCATCTGTATCTCA
ACGGGGAAACCCTTCTTCATCTTCAGACCCGATCTCAGGTTAGTCAACGA
ATCAGTGTCCAGATCTTGCGAACCGGACAGCACCGCGCGGAGGCTCGTCT
GGTTGTTTTTGTCGGAGGTAAAGGCCGTAACGGACCCGTTCCCGACGGGG
ACGGAGTTGGAGAAGACCGTAACGGCGAAGGGGTCGTAGAAGAAAATAAG
GTGGTTGTTGGGGTTTTTGGCGATGAGAGTGAGGTTGAAGAGCGTGACGA
GGTGCGAGGGAGAGTCGGCGGAAGAAGTGAGGTTCATCTTGACAATGCGG
AGGTTGGTGACGGAAAATTCGGGACGGTGAGGGCGGTACAGTACGTACAG
TGCGGCGCCGACAATGGCGGCGAGGAGCGCCACCGCGAGGACGGTGAGGA
TGGTCcagaagcagcagcagcagcagagGTTGCGGTGGGAGCGCTGACCT
CGGCGGTGGTAATGGGATTGCGGTCGGTAAACTTGACGGTTGGGATTGTA
CAGTTGGGACTTGACGGGAGCGGAATTGCCGTTAGTGGCGGCGGTGCCGT
TAATTGCGCCGTTTCCGTTGGGTTTGGAGGACTGGTCCGTcattttgata
aaaaagaaaagaaaaatgggaaaaaagAAAGCGTAGATAAGAGTGAAGAA
ACGAGAGAGAGGAAGGGAAGTGAGGAAAAGAAGGTTGAGAGAAGAACAAG
TTTTGTAGAGGCAAAATAG
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protein sequence of LR48_mrnaVigan04g235600_Va_Jingnong6_v1.1

>LR48_mrnaVigan04g235600_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan04g235600_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan04g235600_Va_Jingnong6_v1.1; organism=Vigna angularis; type=polypeptide; length=308bp
MMGLIIEIGKLPDLDSKIHLTLGIHHGSHCRRLAGGNRSSDSVARYSNSH
LLALEPIHLHLHLGIHLYLNGETLLHLQTRSQVSQRISVQILRTGQHRAE
ARLVVFVGGKGRNGPVPDGDGVGEDRNGEGVVEENKVVVGVFGDESEVEE
RDEVRGRVGGRSEVHLDNAEVGDGKFGTVRAVQYVQCGADNGGEERHRED
GEDGPEAAAAAEVAVGALTSAVVMGLRSVNLTVGIVQLGLDGSGIAVSGG
GAVNCAVSVGFGGLVRHFDKKEKKNGKKESVDKSEETRERKGSEEKKVER
RTSFVEAK
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mRNA from alignment at Chr_4-CM003374.1:32847636..32848654+

Legend: polypeptidestart_codonexonCDSintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>LR48_mrnaVigan04g235600_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan04g235600_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan04g235600; organism=Vigna angularis; type=mRNA; length=1019bp; location=Sequence derived from: Chr_4-CM003374.1:32847636..32848654+ (Vigna angularis
ATGATGGGACTGATTATTGAAATCGGTAAGATGTAGATGATAATAACGAA
TTTTGCAATAATAATAGCAATCGATCAACCAAAAagacattattattttt
atttttattattaaaaggaaAACTTCCAGATCTTGATTCGAAGATCCACC
TTACACTCGGAATCCACCACGGAAGCCACTGCCGGAGACTTGCCGGCGGG
AACCGTTCCTCTGATTCCGTCGCACGTTACTCGAATTCCCACCTTCTTGC
TCTTGAGCCAatccatcttcatcttcaccttGGTATCCATCTGTATCTCA
ACGGGGAAACCCTTCTTCATCTTCAGACCCGATCTCAGGTTAGTCAACGA
ATCAGTGTCCAGATCTTGCGAACCGGACAGCACCGCGCGGAGGCTCGTCT
GGTTGTTTTTGTCGGAGGTAAAGGCCGTAACGGACCCGTTCCCGACGGGG
ACGGAGTTGGAGAAGACCGTAACGGCGAAGGGGTCGTAGAAGAAAATAAG
GTGGTTGTTGGGGTTTTTGGCGATGAGAGTGAGGTTGAAGAGCGTGACGA
GGTGCGAGGGAGAGTCGGCGGAAGAAGTGAGGTTCATCTTGACAATGCGG
AGGTTGGTGACGGAAAATTCGGGACGGTGAGGGCGGTACAGTACGTACAG
TGCGGCGCCGACAATGGCGGCGAGGAGCGCCACCGCGAGGACGGTGAGGA
TGGTCcagaagcagcagcagcagcagagGTTGCGGTGGGAGCGCTGACCT
CGGCGGTGGTAATGGGATTGCGGTCGGTAAACTTGACGGTTGGGATTGTA
CAGTTGGGACTTGACGGGAGCGGAATTGCCGTTAGTGGCGGCGGTGCCGT
TAATTGCGCCGTTTCCGTTGGGTTTGGAGGACTGGTCCGTcattttgata
aaaaagaaaagaaaaatgggaaaaaagAAAGCGTAGATAAGAGTGAAGAA
ACGAGAGAGAGGAAGGGAAGTGAGGAAAAGAAGGTTGAGAGAAGAACAAG
TTTTGTAGAGGCAAAATAG
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Coding sequence (CDS) from alignment at Chr_4-CM003374.1:32847636..32848654+

>LR48_mrnaVigan04g235600_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan04g235600_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan04g235600; organism=Vigna angularis; type=CDS; length=927bp; location=Sequence derived from: Chr_4-CM003374.1:32847636..32848654+ (Vigna angularis
ATGATGGGACTGATTATTGAAATCGgaaAACTTCCAGATCTTGATTCGAA
GATCCACCTTACACTCGGAATCCACCACGGAAGCCACTGCCGGAGACTTG
CCGGCGGGAACCGTTCCTCTGATTCCGTCGCACGTTACTCGAATTCCCAC
CTTCTTGCTCTTGAGCCAatccatcttcatcttcaccttGGTATCCATCT
GTATCTCAACGGGGAAACCCTTCTTCATCTTCAGACCCGATCTCAGGTTA
GTCAACGAATCAGTGTCCAGATCTTGCGAACCGGACAGCACCGCGCGGAG
GCTCGTCTGGTTGTTTTTGTCGGAGGTAAAGGCCGTAACGGACCCGTTCC
CGACGGGGACGGAGTTGGAGAAGACCGTAACGGCGAAGGGGTCGTAGAAG
AAAATAAGGTGGTTGTTGGGGTTTTTGGCGATGAGAGTGAGGTTGAAGAG
CGTGACGAGGTGCGAGGGAGAGTCGGCGGAAGAAGTGAGGTTCATCTTGA
CAATGCGGAGGTTGGTGACGGAAAATTCGGGACGGTGAGGGCGGTACAGT
ACGTACAGTGCGGCGCCGACAATGGCGGCGAGGAGCGCCACCGCGAGGAC
GGTGAGGATGGTCcagaagcagcagcagcagcagagGTTGCGGTGGGAGC
GCTGACCTCGGCGGTGGTAATGGGATTGCGGTCGGTAAACTTGACGGTTG
GGATTGTACAGTTGGGACTTGACGGGAGCGGAATTGCCGTTAGTGGCGGC
GGTGCCGTTAATTGCGCCGTTTCCGTTGGGTTTGGAGGACTGGTCCGTca
ttttgataaaaaagaaaagaaaaatgggaaaaaagAAAGCGTAGATAAGA
GTGAAGAAACGAGAGAGAGGAAGGGAAGTGAGGAAAAGAAGGTTGAGAGA
AGAACAAGTTTTGTAGAGGCAAAATAG
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