LR48_mrnaVigan05g214500
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Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following start_codon feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following intron feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
Homology
BLAST of LR48_mrnaVigan05g214500 vs. DB:Swiss
Match: FLZ11_ARATH (FCS-Like Zinc finger 11 OS=Arabidopsis thaliana OX=3702 GN=FLZ11 PE=1 SV=1) HSP 1 Score: 90.1225 bits (222), Expect = 6.879e-19 Identity = 54/115 (46.96%), Postives = 67/115 (58.26%), Query Frame = 1 Query: 814 EDYTCIISHGPNPKRTHIFGDCVLECDNNDFTEFSMKEEPAFRASQVPTFSEGSSPYHSDNVFSFCYSCNKKLVREEEIYRYRGGKAFCSFECGSEEILVREE-LEKAGTDSAES 1155
EDYTCII+HGPNPK THI+GD VLEC N+ +E + S + SDN C CNKKL ++IY YR K+FCS EC SEE+++ EE LE+ D ES
Sbjct: 218 EDYTCIIAHGPNPKTTHIYGDRVLECHKNELKGDEDNKE------------KFGSVFPSDNFLGICNFCNKKLGGGDDIYMYR-EKSFCSEECRSEEMMIDEEDLEEPCIDMHES 319
BLAST of LR48_mrnaVigan05g214500 vs. DB:Swiss
Match: FLZ10_ARATH (FCS-Like Zinc finger 10 OS=Arabidopsis thaliana OX=3702 GN=FLZ10 PE=1 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 3.368e-18 Identity = 49/114 (42.98%), Postives = 64/114 (56.14%), Query Frame = 1 Query: 772 GCLGSLSAREIELSEDYTCIISHGPNPKRTHIFGDCVLE-CDNNDFTEFSMKEEPAFRASQVPT-FSEGSSPYHSDNVFSFCYSCNKKLVREEEIYRYRGGKAFCSFECGSEEI 1107
G L + ++E+SEDYTC+ISHGPNPK TH +GD V+E + + K E + P + + SFCY C+KKL E+IY Y G KAFCS EC S+EI
Sbjct: 194 GSLNGGTESDMEISEDYTCVISHGPNPKTTHFYGDQVMESVEREELKNRCCKNEKESIFAVAPLDLTTPVDVLPPKDFLSFCYGCSKKLGMGEDIYMYSGYKAFCSSECRSKEI 307 HSP 2 Score: 69.3218 bits (168), Expect = 1.112e-11 Identity = 45/119 (37.82%), Postives = 66/119 (55.46%), Query Frame = 1 Query: 139 FGAKGLPDSESVWSPTSPLDCRLFSNLSSPFSIKSCRPSFQTGHKKQFDDSKVGLGIISSMINETKHNND-----ILGKFQRKSIIFGPQVKTGILKFSNNHEFFAPYLKSKSLPKNYV 480
F K D ES WSPTSPLD RLFS L +PF+ S R S G ++ +D KVGL I+ S++++ H+ D +L K+IIFG +++G H P+ K+ +PK+ +
Sbjct: 35 FEGKCPSDYESAWSPTSPLDFRLFSTLGNPFAASSSR-SIWRGKQRSWDSGKVGLSIVHSLVDD--HHTDSSATIVLPSPDSKNIIFGSLMRSG----QKPHLLSQPFTKAL-MPKDVI 145
BLAST of LR48_mrnaVigan05g214500 vs. DB:Swiss
Match: FLZ8_ARATH (FCS-Like Zinc finger 8 OS=Arabidopsis thaliana OX=3702 GN=FLZ8 PE=1 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 4.250e-17 Identity = 47/115 (40.87%), Postives = 65/115 (56.52%), Query Frame = 1 Query: 781 GSLSAREIELSEDYTCIISHGPNPKRTHIFGDCVLECDNNDFTEFSMKEEPAFRASQVPTFSEGSSPYH-SDNVFSFCYSCNKKLVREEEIYRYRGGKAFCSFECGSEEILVREE 1122
G A ++ELSEDYTC+ HGPNP+ HIF +C++E S FR+S +E S Y D+ S C +C K L ++I+ YRG +AFCS EC S E+++ EE
Sbjct: 160 GYFPASDMELSEDYTCVTCHGPNPRTIHIFDNCIVE---------SQPGVVFFRSSD--PVNESDSDYSPPDSFLSCCCNCKKSLGPRDDIFMYRGDRAFCSSECRSIEMMMSEE 263
BLAST of LR48_mrnaVigan05g214500 vs. DB:Swiss
Match: MARD1_ARATH (Protein MARD1 OS=Arabidopsis thaliana OX=3702 GN=MARD1 PE=1 SV=2) HSP 1 Score: 77.0258 bits (188), Expect = 1.270e-14 Identity = 42/111 (37.84%), Postives = 61/111 (54.95%), Query Frame = 1 Query: 787 LSAREIELSEDYTCIISHGPNPKRTHIFGDCVLECDNNDFTEFSMKEEPAFRASQVPTFSEGSSPYHSDNVFSFCYSCNKKLVREEEIYRYRGGKAFCSFECGSEEILVRE 1119
L+ EI+ +EDYT +ISHGPNP THIF DN+ F E + VP +++ S C++C K L ++++IY YRG K FCS EC +E+L+ +
Sbjct: 165 LAVSEIDQTEDYTRVISHGPNPTITHIF-------DNSVFVEAT--------PCSVPLPQPAMETKSTESFLSRCFTCKKNLDQKQDIYIYRGEKGFCSSECRYQEMLLDQ 260 The following BLAST results are available for this feature:
BLAST of LR48_mrnaVigan05g214500 vs. DB:Swiss
Analysis Date: 2020-05-21 (BLAST: V. angularis Jingnong 6 genome v1.1) Total hits: 4 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan: Vigna angularis Jingnong 6 genome v1.1
Date Performed: 2020-05-21 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >LR48_mrnaVigan05g214500_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan05g214500_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan05g214500; organism=Vigna angularis; type=mRNA; length=1298bpback to top protein sequence of LR48_mrnaVigan05g214500_Va_Jingnong6_v1.1 >LR48_mrnaVigan05g214500_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan05g214500_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan05g214500_Va_Jingnong6_v1.1; organism=Vigna angularis; type=polypeptide; length=403bpback to top mRNA from alignment at Chr_5-CM003375.1:29381477..29382774+ Legend: polypeptidestart_codonexonCDSintronstop_codon Hold the cursor over a type above to highlight its positions in the sequence below.>LR48_mrnaVigan05g214500_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan05g214500_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan05g214500; organism=Vigna angularis; type=mRNA; length=1298bp; location=Sequence derived from: Chr_5-CM003375.1:29381477..29382774+ (Vigna angularisback to top Coding sequence (CDS) from alignment at Chr_5-CM003375.1:29381477..29382774+ >LR48_mrnaVigan05g214500_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan05g214500_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan05g214500; organism=Vigna angularis; type=CDS; length=1212bp; location=Sequence derived from: Chr_5-CM003375.1:29381477..29382774+ (Vigna angularisback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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