LR48_mrnaVigan05g217800
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following start_codon feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following intron feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
Homology
BLAST of LR48_mrnaVigan05g217800 vs. DB:Swiss
Match: LEA2_CICAR (Late embryogenesis abundant protein 2 OS=Cicer arietinum OX=3827 PE=2 SV=1) HSP 1 Score: 109.383 bits (272), Expect = 5.335e-30 Identity = 104/148 (70.27%), Postives = 118/148 (79.73%), Query Frame = 1 Query: 1 MASQNQSYEAGETKGRTEEKTKQTVGNIGXXXXXXXXXXXXXXQSXXXXXXXXXXXXXXXXXXXXXXXXXXXSDTSQAAKEKAQQNKDTVQGKASEMGQSTKESAQSGKDNTQGFLQQTGEMVKGAAQGATEAVKKTLGLDHNDDYNR 444 M S +QSY AGE KGRTEEKT Q +GNI DKAQAAK+KA AQ+AKDKT QTAQAAK+KTQQTAQAAKDKT T+QA KEKAQ + K SEMGQSTKE+AQSGKDN+ GFLQQTGE KG AQGAT+AVK+T G+ NDD ++ Sbjct: 1 MTSHDQSYRAGEAKGRTEEKTNQMIGNIEDKAQAAKEKAQQAAQTAKDKTSQTAQAAKEKTQQTAQAAKDKTQQTTQATKEKAQDTTGRAKEKGSEMGQSTKETAQSGKDNSAGFLQQTGEKAKGMAQGATDAVKQTFGMT-NDDQDK 147
BLAST of LR48_mrnaVigan05g217800 vs. DB:Swiss
Match: LEA1_CICAR (Late embryogenesis abundant protein 1 OS=Cicer arietinum OX=3827 PE=2 SV=1) HSP 1 Score: 104.76 bits (260), Expect = 7.564e-28 Identity = 103/170 (60.59%), Postives = 121/170 (71.18%), Query Frame = 1 Query: 1 MASQNQSYEAGETKGRTEEKTKQTVGNI-----------GXXXXXXXXXXXXXXQSXXXXXXXXXXXXXXXXXXXXXXXXXXXSDTSQAAKEKAQQNKDTVQGKA-----------SEMGQSTKESAQSGKDNTQGFLQQTGEMVKGAAQGATEAVKKTLGLDHNDDYNR 444 MAS +QSY+AGET GRTEEKT Q +GNI AQ AKDK AQ+AK+KTQQTAQAAK+KTQQTAQAAKD+T T+QAAK+K QQ + + KA SEMGQSTKE+AQSGKDN+ GFLQQTGE VKG AQGAT+AVK+T G+ NDD ++ Sbjct: 1 MASHDQSYKAGETMGRTEEKTNQMIGNIEDKAQAAKEKAQQAAQTAKDKTSQTAQAAKEKTQQTAQAAKEKTQQTAQAAKDETQQTAQAAKDKTQQTTEATKEKAQDTTGRAREKGSEMGQSTKETAQSGKDNSAGFLQQTGEKVKGMAQGATDAVKQTFGM-ANDDKDK 169
BLAST of LR48_mrnaVigan05g217800 vs. DB:Swiss
Match: LEA7_ARATH (Late embryogenesis abundant protein 7 OS=Arabidopsis thaliana OX=3702 GN=LEA7 PE=2 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 5.552e-15 Identity = 75/162 (46.30%), Postives = 103/162 (63.58%), Query Frame = 1 Query: 1 MAS-QNQSYEAGETKGRTEEKTKQTVGNIGXXXXXXXXXXXXXXQSXXXXXXXXXXXXXXXXXXXXXXXXXXXSDTSQAAKEKAQQNKD-----------TVQGKASEMGQSTKESAQSGKDNTQGFLQQTGEMVKGAAQGATEAVKKTLGLDHNDDYNRRN 450 MAS Q QSY+AGET+G+ +EKT + +G +GDK QAAKDK + AQS A+ K +TAQ+AKDKTS +Q +E+AQ++KD ++ KA + + TKE+A++GK+ T G L QTGE VK A GAT+AVK TLGL D+ N+ + Sbjct: 1 MASHQEQSYKAGETRGKAQEKTGEAMGTMGDKTQAAKDKTQETAQS-----------AQQKAHETAQSAKDKTSQAAQTTQERAQESKDKTGSYMSETGEAIKNKAHDAAEYTKETAEAGKEKTSGILGQTGEQVKQMAMGATDAVKHTLGL-RTDEGNKEH 150
BLAST of LR48_mrnaVigan05g217800 vs. DB:Swiss
Match: LEAD3_DAUCA (Late embryogenesis abundant protein Dc3 OS=Daucus carota OX=4039 PE=2 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.373e-14 Identity = 75/146 (51.37%), Postives = 94/146 (64.38%), Query Frame = 1 Query: 1 MAS-QNQSYEAGETKGRTEEKTKQTVGNIGXXXXXXXXXXXXXXQSXXXXXXXXXXXXXXXXXXXXXXXXXXXSDTSQAAKEKAQQNKDTVQGKASEMGQSTKESAQSGKDNTQGFLQQTGEMVKGAAQGATEAVKKTLGLDHNDD 435 MAS Q+QSY+AGE KG +EKT Q + DKAQAAKDKA +MA SA+D+T ++ A A KDKT +T+QAAKEK + KASEMG+S KE+A +GK+ T G + E VKG AQGATEAVK T G+ D+ Sbjct: 1 MASHQDQSYKAGEPKGHAQEKTGQMADTMKDKAQAAKDKASEMAGSARDRTVESKDQTGSYVSDKAGAVKDKTCETAQAAKEKTGGAMQATKEKASEMGESAKETAVAGKEKTGGLMSSAAEQVKGMAQGATEAVKNTFGMAGADE 146
BLAST of LR48_mrnaVigan05g217800 vs. DB:Swiss
Match: LEA29_ARATH (Late embryogenesis abundant protein 29 OS=Arabidopsis thaliana OX=3702 GN=LEA29 PE=2 SV=1) HSP 1 Score: 60.4622 bits (145), Expect = 1.714e-10 Identity = 77/191 (40.31%), Postives = 99/191 (51.83%), Query Frame = 1 Query: 1 MASQNQSYEAGETKGRTEEKTKQTVGNIGXXXXXXXXXXXXXXQSXXXXXXXXXXXXXXXXXXXXXXXXXXXSDTSQAAKEKAQQNKDTVQGKASE---------------------------------------------------MGQSTKESAQSGKDNTQGFLQQTGEMVKGAAQGATEAVKKTLGL 420 MAS QSY+AGET+G+ +EKT Q +G + DKA+ +DK AQ+A+ K +TAQ+AKDKT QTAQAA+ K +T+Q+AKEK Q T Q KA E Q TKE+A++G+D T GFL QTGE VK A GA +AVK T G+ Sbjct: 1 MASNQQSYKAGETRGKAQEKTGQAMGTMRDKAEEGRDKTSQTAQTAQQKAHETAQSAKDKTSQTAQAAQQKAHETAQSAKEKTSQTAQTAQQKAHETTQAAKEKTSQAGDKAREAKDKAGSYLSETGEAIKNKAQDAAQYTKETAQGAAQYTKETAEAGRDKTGGFLSQTGEHVKQMAMGAADAVKHTFGM 191
BLAST of LR48_mrnaVigan05g217800 vs. DB:Swiss
Match: LEA76_BRANA (Late embryogenesis abundant protein 76 OS=Brassica napus OX=3708 PE=2 SV=2) HSP 1 Score: 57.7658 bits (138), Expect = 1.922e-9 Identity = 34/68 (50.00%), Postives = 43/68 (63.24%), Query Frame = 1 Query: 217 SDTSQAAKEKAQQNKDTVQGKASEMGQSTKESAQSGKDNTQGFLQQTGEMVKGAAQGATEAVKKTLGL 420 S+T +A K+KAQ + A Q TKE+A++GKD T GFL QTGE VK A GA +AVK T G+ Sbjct: 150 SETGEAVKQKAQDAAQYTKETAQNAAQYTKETAEAGKDKTGGFLSQTGEHVKQMAMGAADAVKHTFGM 217
BLAST of LR48_mrnaVigan05g217800 vs. DB:Swiss
Match: LEA3_WHEAT (Late embryogenesis abundant protein, group 3 OS=Triticum aestivum OX=4565 PE=2 SV=1) HSP 1 Score: 50.0618 bits (118), Expect = 7.683e-7 Identity = 33/68 (48.53%), Postives = 45/68 (66.18%), Query Frame = 1 Query: 217 SDTSQAAKEKAQQNKDTVQGKASEMGQSTKESAQSGKDNTQGFLQQTGEMVKGAAQGATEAVKKTLGL 420 ++T++AA++KA + + + KASE Q TKESA +GKD T LQQ GE V A GA +AV TLG+ Sbjct: 130 AETTEAARQKAAEATEAAKQKASETAQYTKESAVTGKDKTGSVLQQAGETVVNAVVGAKDAVANTLGM 197
BLAST of LR48_mrnaVigan05g217800 vs. DB:Swiss
Match: LEAD7_GOSHI (Late embryogenesis abundant protein D-7 OS=Gossypium hirsutum OX=3635 PE=2 SV=1) HSP 1 Score: 48.521 bits (114), Expect = 9.778e-7 Identity = 52/145 (35.86%), Postives = 78/145 (53.79%), Query Frame = 1 Query: 1 MASQNQSYEAGETKGRTEEKTKQTVGNIGXXXXXXXXXXXXXXQSXXXXXXXXXXXXXXXXXXXXXXXXXXXSDTSQAAKEKAQQNKDTVQGKASEMGQSTKESAQSGKDNTQGFLQQTGEMVKGAAQGATEAVKKTLGLDHNDD 435 MAS QSY+AG +GR EK +Q ++ +KA+AAK K + A++AK KT +T++AAK+K + +T K + + + A+ K+ + G LQQ GE V+ AAQGAT+AVK T G+ D+ Sbjct: 1 MASHEQSYKAGRAEGRAHEKGEQMKESMKEKAEAAKQKTMETAEAAKQKTM----------------------ETAEAAKQKTRGAAETTNDKTKQTAGAARGKAEETKETSGGILQQAGEKVRNAAQGATDAVKHTFGMADADE 123 The following BLAST results are available for this feature:
BLAST of LR48_mrnaVigan05g217800 vs. DB:Swiss
Analysis Date: 2020-05-21 (BLAST: V. angularis Jingnong 6 genome v1.1) Total hits: 8 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan: Vigna angularis Jingnong 6 genome v1.1
Date Performed: 2020-05-21 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >LR48_mrnaVigan05g217800_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan05g217800_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan05g217800; organism=Vigna angularis; type=mRNA; length=555bpback to top protein sequence of LR48_mrnaVigan05g217800_Va_Jingnong6_v1.1 >LR48_mrnaVigan05g217800_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan05g217800_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan05g217800_Va_Jingnong6_v1.1; organism=Vigna angularis; type=polypeptide; length=150bpback to top mRNA from alignment at Chr_5-CM003375.1:29708639..29709193- Legend: polypeptidestart_codonexonCDSintronstop_codon Hold the cursor over a type above to highlight its positions in the sequence below.>LR48_mrnaVigan05g217800_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan05g217800_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan05g217800; organism=Vigna angularis; type=mRNA; length=555bp; location=Sequence derived from: Chr_5-CM003375.1:29708639..29709193- (Vigna angularisback to top Coding sequence (CDS) from alignment at Chr_5-CM003375.1:29708639..29709193- >LR48_mrnaVigan05g217800_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan05g217800_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan05g217800; organism=Vigna angularis; type=CDS; length=453bp; location=Sequence derived from: Chr_5-CM003375.1:29708639..29709193- (Vigna angularisback to top |