LR48_mrnaVigan05g218600

Transcript Overview
NameLR48_mrnaVigan05g218600
Unique NameLR48_mrnaVigan05g218600_Va_Jingnong6_v1.1
TypemRNA
OrganismVigna angularis (Adzuki bean, red mung bean, azuki)
Sequence length2670
Producthypothetical protein
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr_5-CM003375.1supercontigChr_5-CM003375.1:29774840..29777509 +Vigna angularis Jingnong 6 genome v1.1n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Vigna angularis Jingnong 6 genome v1.12020-05-19
InterProScan: Vigna angularis Jingnong 6 genome v1.12020-05-21
BLAST: V. angularis Jingnong 6 genome v1.12020-05-21
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
ascaR619Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ascaR644Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ascaR651Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
asasL054Vigna angularis Jingnong 6 genome v1.1Vigna angularis
anasL0121Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anasL0387Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anasL0863Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anasL0865Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anasL1015Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anasL1099Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anasL1340Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ascaiR755Cicer arietinum ICC 4958 genome v2Cicer arietinum
asccR0943Cajanus cajan Asha genome v1.0Cajanus cajan
asccR0965Cajanus cajan Asha genome v1.0Cajanus cajan
ascrR701Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
ascrR710Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
ascrR738Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
ascrR749Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
aspsR602Pisum sativum Cameor genome v1aPisum sativum
aspsR609Pisum sativum Cameor genome v1aPisum sativum
aspsR638Pisum sativum Cameor genome v1aPisum sativum
aspsR639Pisum sativum Cameor genome v1aPisum sativum
aspvR665Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
aspvR666Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
aspvR686Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
aspvR692Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
aspvR731Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
asvuR580Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
asvuR591Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
asvuR595Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
astifR651Vicia faba cv. Tiffany genome v1.0Vicia faba
astifR677Vicia faba cv. Tiffany genome v1.0Vicia faba
astifR679Vicia faba cv. Tiffany genome v1.0Vicia faba
asvfhR666Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
asvfhR691Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
asvrvR535Vigna radiata cv. VC1973A genome v6.0Vigna radiata
asvrvR560Vigna radiata cv. VC1973A genome v6.0Vigna radiata
asvrvR566Vigna radiata cv. VC1973A genome v6.0Vigna radiata
asvrvR578Vigna radiata cv. VC1973A genome v6.0Vigna radiata
asvssR719Vicia sativa cv. Studenica genome v1.0Vicia sativa
asvssR724Vicia sativa cv. Studenica genome v1.0Vicia sativa
asvssR733Vicia sativa cv. Studenica genome v1.0Vicia sativa
asvssR738Vicia sativa cv. Studenica genome v1.0Vicia sativa
asvssR746Vicia sativa cv. Studenica genome v1.0Vicia sativa
asvssR756Vicia sativa cv. Studenica genome v1.0Vicia sativa
asvuaR542Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
asvuaR559Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
asvuaR564Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
ascanR566Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
ascanR594Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum

Orthologs
Gene/TranscriptAssemblySpecies
rna-KK1_015040Cajanus cajan Asha genome v1.0Cajanus cajan
Psat5g301280.1Pisum sativum Cameor genome v1aPisum sativum
rna-TanjilR_16302Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
jg9729.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
rna-XM_014644764.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
evm.model.Chr05.2720Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
rna-XM_004486629.3Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
Cr_00904.1Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
rna-TanjilR_04367Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Vigun05g291300.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
Ca_02869Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
Phvul.005G175800.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
gene-LR48_Vigan05g218600gene-LR48_Vigan05g218600_Va_Jingnong6_v1.1Vigna angularisgene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
LR48_mrnaVigan05g218600LR48_mrnaVigan05g218600_Va_Jingnong6_v1.1-proteinVigna angularispolypeptide
LR48_mrnaVigan05g218600_Va_Jingnong6_v1.1LR48_mrnaVigan05g218600_Va_Jingnong6_v1.1Vigna angularispolypeptide


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
LR48_mrnaVigan05g218600_Va_Jingnong6_v1.1-start_codon-Chr_5-CM003375.1_Va_Jingnong6_v1.1-1589992784:29774840..29774842LR48_mrnaVigan05g218600_Va_Jingnong6_v1.1-start_codon-Chr_5-CM003375.1_Va_Jingnong6_v1.1-1589992784:29774840..29774842Vigna angularisstart_codon


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
LR48_mrnaVigan05g218600_Va_Jingnong6_v1.1-exon-Chr_5-CM003375.1_Va_Jingnong6_v1.1-1589992784:29774840..29774903LR48_mrnaVigan05g218600_Va_Jingnong6_v1.1-exon-Chr_5-CM003375.1_Va_Jingnong6_v1.1-1589992784:29774840..29774903Vigna angularisexon
LR48_mrnaVigan05g218600_Va_Jingnong6_v1.1-exon-Chr_5-CM003375.1_Va_Jingnong6_v1.1-1589992784:29775085..29775125LR48_mrnaVigan05g218600_Va_Jingnong6_v1.1-exon-Chr_5-CM003375.1_Va_Jingnong6_v1.1-1589992784:29775085..29775125Vigna angularisexon
LR48_mrnaVigan05g218600_Va_Jingnong6_v1.1-exon-Chr_5-CM003375.1_Va_Jingnong6_v1.1-1589992784:29775227..29775506LR48_mrnaVigan05g218600_Va_Jingnong6_v1.1-exon-Chr_5-CM003375.1_Va_Jingnong6_v1.1-1589992784:29775227..29775506Vigna angularisexon
LR48_mrnaVigan05g218600_Va_Jingnong6_v1.1-exon-Chr_5-CM003375.1_Va_Jingnong6_v1.1-1589992784:29775582..29775818LR48_mrnaVigan05g218600_Va_Jingnong6_v1.1-exon-Chr_5-CM003375.1_Va_Jingnong6_v1.1-1589992784:29775582..29775818Vigna angularisexon
LR48_mrnaVigan05g218600_Va_Jingnong6_v1.1-exon-Chr_5-CM003375.1_Va_Jingnong6_v1.1-1589992784:29776449..29776530LR48_mrnaVigan05g218600_Va_Jingnong6_v1.1-exon-Chr_5-CM003375.1_Va_Jingnong6_v1.1-1589992784:29776449..29776530Vigna angularisexon
LR48_mrnaVigan05g218600_Va_Jingnong6_v1.1-exon-Chr_5-CM003375.1_Va_Jingnong6_v1.1-1589992784:29776615..29776723LR48_mrnaVigan05g218600_Va_Jingnong6_v1.1-exon-Chr_5-CM003375.1_Va_Jingnong6_v1.1-1589992784:29776615..29776723Vigna angularisexon
LR48_mrnaVigan05g218600_Va_Jingnong6_v1.1-exon-Chr_5-CM003375.1_Va_Jingnong6_v1.1-1589992784:29776819..29776935LR48_mrnaVigan05g218600_Va_Jingnong6_v1.1-exon-Chr_5-CM003375.1_Va_Jingnong6_v1.1-1589992784:29776819..29776935Vigna angularisexon
LR48_mrnaVigan05g218600_Va_Jingnong6_v1.1-exon-Chr_5-CM003375.1_Va_Jingnong6_v1.1-1589992784:29777222..29777509LR48_mrnaVigan05g218600_Va_Jingnong6_v1.1-exon-Chr_5-CM003375.1_Va_Jingnong6_v1.1-1589992784:29777222..29777509Vigna angularisexon


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
LR48_mrnaVigan05g218600_Va_Jingnong6_v1.1-intron-Chr_5-CM003375.1_Va_Jingnong6_v1.1-1589992784:29774904..29775084LR48_mrnaVigan05g218600_Va_Jingnong6_v1.1-intron-Chr_5-CM003375.1_Va_Jingnong6_v1.1-1589992784:29774904..29775084Vigna angularisintron
LR48_mrnaVigan05g218600_Va_Jingnong6_v1.1-intron-Chr_5-CM003375.1_Va_Jingnong6_v1.1-1589992784:29775126..29775226LR48_mrnaVigan05g218600_Va_Jingnong6_v1.1-intron-Chr_5-CM003375.1_Va_Jingnong6_v1.1-1589992784:29775126..29775226Vigna angularisintron
LR48_mrnaVigan05g218600_Va_Jingnong6_v1.1-intron-Chr_5-CM003375.1_Va_Jingnong6_v1.1-1589992784:29775507..29775581LR48_mrnaVigan05g218600_Va_Jingnong6_v1.1-intron-Chr_5-CM003375.1_Va_Jingnong6_v1.1-1589992784:29775507..29775581Vigna angularisintron
LR48_mrnaVigan05g218600_Va_Jingnong6_v1.1-intron-Chr_5-CM003375.1_Va_Jingnong6_v1.1-1589992784:29775819..29776448LR48_mrnaVigan05g218600_Va_Jingnong6_v1.1-intron-Chr_5-CM003375.1_Va_Jingnong6_v1.1-1589992784:29775819..29776448Vigna angularisintron
LR48_mrnaVigan05g218600_Va_Jingnong6_v1.1-intron-Chr_5-CM003375.1_Va_Jingnong6_v1.1-1589992784:29776531..29776614LR48_mrnaVigan05g218600_Va_Jingnong6_v1.1-intron-Chr_5-CM003375.1_Va_Jingnong6_v1.1-1589992784:29776531..29776614Vigna angularisintron
LR48_mrnaVigan05g218600_Va_Jingnong6_v1.1-intron-Chr_5-CM003375.1_Va_Jingnong6_v1.1-1589992784:29776724..29776818LR48_mrnaVigan05g218600_Va_Jingnong6_v1.1-intron-Chr_5-CM003375.1_Va_Jingnong6_v1.1-1589992784:29776724..29776818Vigna angularisintron
LR48_mrnaVigan05g218600_Va_Jingnong6_v1.1-intron-Chr_5-CM003375.1_Va_Jingnong6_v1.1-1589992784:29776936..29777221LR48_mrnaVigan05g218600_Va_Jingnong6_v1.1-intron-Chr_5-CM003375.1_Va_Jingnong6_v1.1-1589992784:29776936..29777221Vigna angularisintron


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS4868CDS4868_Va_Jingnong6_v1.1Vigna angularisCDS


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
LR48_mrnaVigan05g218600_Va_Jingnong6_v1.1-stop_codon-Chr_5-CM003375.1_Va_Jingnong6_v1.1-1589992784:29777507..29777509LR48_mrnaVigan05g218600_Va_Jingnong6_v1.1-stop_codon-Chr_5-CM003375.1_Va_Jingnong6_v1.1-1589992784:29777507..29777509Vigna angularisstop_codon


Homology
BLAST of LR48_mrnaVigan05g218600 vs. DB:Swiss
Match: PGLR5_ARATH (Probable polygalacturonase At1g80170 OS=Arabidopsis thaliana OX=3702 GN=At1g80170 PE=1 SV=1)

HSP 1 Score: 426.402 bits (1095), Expect = 1.780e-146
Identity = 208/388 (53.61%), Postives = 273/388 (70.36%), Query Frame = 1
Query:   22 LFHPDFLSVLHIPKVDIGGPCRSKIILTISGTIVAPQDPAVWLGLDQRKWLYFHGVNHLTVDGGGSVNGMGEEWWARSCKINSTNVLLPGKLKLIFSSSLINCVTKVASKCPFAAMSSCSNAEYETTLTLQALTFHRCKDLKVRNLMLINSQRMHLSFTNCMRVVASHLKVLAPAFSPNTDGIHISASKGVQVRDSVIRTGDDCISIVRNSSRVWIRNIYCGPGHGISIGSLGKLKTWESVQNVIVEGAYLYNTDNGLRIKTWQGGSGLASKITFQNILMENVSNPIIIDQYYCDSQHPCENQTSAVRVENISFIDVQGTSASDEAIKFACSDISPCEDLYLENIFLVSCFG-GNTNSFCWQAHGSARGFLYPPTCFSISDDFIRQNI 1182
            +  P+  + L  P +D+ GPC++++ L ISGTI+AP DP VW GL++RKWLYFHG++ LTV+GGG+VNGMG+EWW RSCK N +N                                 C  A         ALTFH+CK+++V NL +I+SQ+MH++ T+C RV  S LKV+APA SPNTDGIHIS S+G+ + ++ + TGDDCISIV+NS+++ I NI CGPGHGISIGSLGK K+WE V+++ V+ A + +T NG+RIKTWQGGSGL SKI F+NI M NVSNPIIIDQYYCDS+ PC NQTSA+ +ENISF+ V+GTSAS EAIK +CSD SPC ++ L++I L    G G T SFCW+A+GS+ G +YPP C S    F+ Q++
Sbjct:   88 ILVPENYTCLLRP-IDLSGPCKARLTLQISGTIIAPNDPDVWEGLNRRKWLYFHGLSRLTVEGGGTVNGMGQEWWERSCKHNHSN--------------------------------PCRGAP-------TALTFHKCKNMRVENLNVIDSQQMHIALTSCRRVTISGLKVIAPATSPNTDGIHISVSRGIVIDNTTVSTGDDCISIVKNSTQISISNIICGPGHGISIGSLGKSKSWEEVRDITVDTAIISDTANGVRIKTWQGGSGLVSKIIFRNIKMNNVSNPIIIDQYYCDSRKPCANQTSAISIENISFVHVRGTSASKEAIKISCSDSSPCRNILLQDIDLEPSNGDGFTESFCWEAYGSSSGQVYPPPCLSDDTSFLEQSV 435          
BLAST of LR48_mrnaVigan05g218600 vs. DB:Swiss
Match: PGLR_PERAE (Polygalacturonase OS=Persea americana OX=3435 PE=2 SV=1)

HSP 1 Score: 309.686 bits (792), Expect = 1.689e-100
Identity = 162/348 (46.55%), Postives = 215/348 (61.78%), Query Frame = 1
Query:   55 IPKVDIGGPCRSKIILTISGTIVAPQDPAVWLGLDQRKWLYFHGVNHLTVDGGGSVNGMGEEWWARSCKINSTNVLLPGKLKLIFSSSLINCVTKVASKCPFAAMSSCSNAEYETTLTLQALTFHRCKDLKVRNLMLINSQRMHLSFTNCMRVVASHLKVLAPAFSPNTDGIHISASKGVQVRDSVIRTGDDCISIVRNSSRVWIRNIYCGPGHGISIGSLGKLKTWESVQNVIVEGAYLYNTDNGLRIKTWQGGSGLASKITFQNILMENVSNPIIIDQYYCDSQHPCENQTSAVRVENISFIDVQGTSASDEAIKFACSDISPCEDLYLENIFLVSCFGGNTNSFC 1098
            + ++   GPC+S + + I GTI A  D + W+G ++++W+ F  +++LT++GGG+ NG GE WW  SCK   +   LP                             C +A         ALTF  CK+L V +L + +SQ+MHLSF  C  V+AS+L V AP  SPNTDGIHI+ ++ + V +SVI TGDDCISI   S  V   NI CGPGHGISIGSLG   +   V  V+V+G  L++T NGLRIKTWQGGSG A  I FQNI+M NV+NPIIIDQYYCDS+ PC  Q SAV+V N+++++++GTSAS+ A+KF CS  SPC+   + NI LV   G  T   C
Sbjct:  127 LKQITFSGPCKSDLRVKIRGTIEASSDQSDWVGHNRKRWIEFEDISNLTLEGGGTSNGNGETWWDSSCKRKKS---LP-----------------------------CKSAP-------TALTFRSCKNLIVSDLSIKDSQKMHLSFDKCQDVIASNLMVTAPEHSPNTDGIHITGTQRIHVMNSVIGTGDDCISIESGSKMVIATNITCGPGHGISIGSLGDRNSEAHVSGVLVDGGNLFDTTNGLRIKTWQGGSGSAKNIKFQNIVMHNVTNPIIIDQYYCDSKDPCPEQESAVKVSNVAYMNIRGTSASEVAVKFDCSKSSPCQGYIVGNINLVGNGGKETTMSC 435          
BLAST of LR48_mrnaVigan05g218600 vs. DB:Swiss
Match: PGLR_ACTDE (Polygalacturonase OS=Actinidia deliciosa OX=3627 PE=2 SV=1)

HSP 1 Score: 289.271 bits (739), Expect = 1.727e-92
Identity = 161/372 (43.28%), Postives = 216/372 (58.06%), Query Frame = 1
Query:   43 SVLHIPK-------VDIGGPCRSKIILTISGTIVAPQDPAVWLGLDQRKWLYFHGVNHLTVDGGGSVNGMGEEWWARSCKINSTNVLLPGKLKLIFSSSLINCVTKVASKCPFAAMSSCSNAEYETTLTLQALTFHRCKDLKVRNLMLINSQRMHLSFTNCMRVVASHLKVLAPAFSPNTDGIHISASKGVQVRDSVIRTGDDCISIVRNSSRVWIRNIYCGPGHGISIGSLGKLKTWESVQNVIVEGAYLYNTDNGLRIKTWQGGSGLASKITFQNILMENVSNPIIIDQYYCDSQHPCENQTSAVRVENISFIDVQGTSASDEAIKFACSDISPCEDLYLENIFLVSCFGGNTNSFCWQAHGSARGFLYP 1137
            +VL +PK       +   GPC+S + + I GTI A  D + +   D R WL F  V +L V+GGG++NG G+ WW  SCK   TN  LP                             C +A         ALTF++ K + V+NL + N+Q++H+SF NC+ V AS+L V AP  SPNTDGIH++ ++ + +   VI TGDDCISIV  S +V + +I CGPGHGISIGSLG   +   V +V+V GA L  T NG+RIKTWQGGSG AS I FQN+ M NV NPIIIDQ YCD   PC+ Q+SAV+V+N+ + +++GT AS+ AI F CS   PC+ + LE++ L    G    + C     S  G + P
Sbjct:  122 AVLLVPKKNYLVRPISFSGPCKSGLTMQIYGTIEASDDRSDYR-KDGRHWLVFDSVQNLRVEGGGTINGNGKIWWQNSCK---TNKALP-----------------------------CKDAP-------TALTFYKSKHVIVKNLKIENAQQIHVSFDNCVNVQASNLMVTAPENSPNTDGIHVTGTQNIHISSCVIGTGDDCISIVNGSRKVRVNDITCGPGHGISIGSLGYGNSEAHVSDVVVNGAKLCGTTNGVRIKTWQGGSGSASNIKFQNVEMHNVENPIIIDQNYCDQDKPCQEQSSAVQVKNVVYQNIKGTCASNVAITFDCSKRFPCQGIVLEDVDLEIEGGAAAKALCNNVELSETGVVSP 453          
BLAST of LR48_mrnaVigan05g218600 vs. DB:Swiss
Match: QRT2_ARATH (Polygalacturonase QRT2 OS=Arabidopsis thaliana OX=3702 GN=QRT2 PE=1 SV=2)

HSP 1 Score: 274.248 bits (700), Expect = 5.846e-87
Identity = 151/353 (42.78%), Postives = 208/353 (58.92%), Query Frame = 1
Query:   10 GLEFLFHPDFLSVLHIPKVDIGGPCRSK-IILTISGTIVAPQDPAVWLGLDQRKWLYFHGVNHLTVDGGGSVNGMGEEWWARSCKINSTNVLLPGKLKLIFSSSLINCVTKVASKCPFAAMSSCSNAEYETTLTLQALTFHRCKDLKVRNLMLINSQRMHLSFTNCMRVVASHLKVLAPAFSPNTDGIHISASKGVQVRDSVIRTGDDCISIVRNSSRVWIRNIYCGPGHGISIGSLGKLKTWESVQNVIVEGAYLYNTDNGLRIKTWQGGSGLASKITFQNILMENVSNPIIIDQYYCDSQHPCENQTSAVRVENISFIDVQGTSASDEAIKFACSDISPCEDLYLENIFLV 1065
            G+ ++  P     + +  V   GPC+S  II  I G I A ++P+ +   ++R W+ F  VN+L V+GGG ++G G  WW +SCKIN     LP                             C  A         A+TF  C +L+V N+ L N+Q+MHL+F +C  V A +L V +PA SPNTDGIH+S ++ + ++DS++RTGDDCISIV  S  V    I CGPGHGISIGSLG+  +   V NV+V  A L  T NG+RIKTWQGG G+A  I FQ+I+M+NV+NPIII+Q YCD    C  Q SAV+V N+ + ++QGTS+   A+KF CS   PC  + ++N+ LV
Sbjct:  101 GIVYIVAPKNRDYM-LKAVTFSGPCKSSLIIFKIYGRIEAWENPSDYK--ERRHWIVFENVNNLRVEGGGRIDGNGHIWWPKSCKINPQ---LP-----------------------------CLGAP-------TAVTFVECNNLRVSNIRLENAQQMHLTFQDCKNVKALNLMVTSPADSPNTDGIHVSGTQNILIQDSIVRTGDDCISIVSGSENVRATGITCGPGHGISIGSLGEDNSEAYVSNVVVNKATLIGTTNGVRIKTWQGGHGMAKNIIFQDIIMKNVTNPIIINQDYCDRVEACPEQKSAVQVSNVLYKNIQGTSSRPIAVKFVCSKNIPCRGISMQNVKLV 411          
BLAST of LR48_mrnaVigan05g218600 vs. DB:Swiss
Match: PGLR_MALDO (Polygalacturonase OS=Malus domestica OX=3750 PE=2 SV=1)

HSP 1 Score: 268.855 bits (686), Expect = 1.102e-84
Identity = 151/359 (42.06%), Postives = 209/359 (58.22%), Query Frame = 1
Query:   64 VDIGGPCRSKIILTISGTIVAPQDPAVWLGLDQRKWLYFHGVNHLTVDGGGSVNGMGEEWWARSCKINSTNVLLPGKLKLIFSSSLINCVTKVASKCPFAAMSSCSNAEYETTLTLQALTFHRCKDLKVRNLMLINSQRMHLSFTNCMRVVASHLKVLAPAFSPNTDGIHISASKGVQVRDSVIRTGDDCISIVRNSSRVWIRNIYCGPGHGISIGSLGKLKTWESVQNVIVEGAYLYNTDNGLRIKTWQGGSGLASKITFQNILMENVSNPIIIDQYYCDSQ-HPCENQTSAVRVENISFIDVQGTSASDEAIKFACSDISPCEDLYLENIFLVSCFGGNTNSFCWQAHGSARGFLYP 1137
            ++  GPC+S++ L I GTI A +D +++  +D   WL F  V +L V G G++NG G  WW  SCKI                        K    C            Y  T    A+TF+RC +L V+NL + ++Q++H+ F NC+ V AS L V AP  SPNTDGIH++ ++ + +  SVI TGDDCISIV  S RV   +I CGPGHGISIGSLG+  + + V  V V GA L  T NGLRIKTW+GGSG A+ I FQN+ M +V+NPIIIDQ YCD +   C+ Q SAV+V+N+ + +++GTSAS +AI   CS   PC+ + L+++ L      N  + C     + +G + P
Sbjct:  145 IEFSGPCKSQLTLQIYGTIEASEDRSIYKDIDH--WLIFDNVQNLLVVGPGTINGNGNIWWKNSCKI------------------------KPQPPC----------GTYAPT----AVTFNRCNNLVVKNLNIQDAQQIHVIFQNCINVQASCLTVTAPEDSPNTDGIHVTNTQNITISSSVIGTGDDCISIVSGSQRVQATDITCGPGHGISIGSLGEDGSEDHVSGVFVNGAKLSGTSNGLRIKTWKGGSGSATNIVFQNVQMNDVTNPIIIDQNYCDHKTKDCKQQKSAVQVKNVLYQNIRGTSASGDAITLNCSQSVPCQGIVLQSVQL-----QNGRAECNNVQPAYKGVVSP 458          
BLAST of LR48_mrnaVigan05g218600 vs. DB:Swiss
Match: PGLR_SOLLC (Polygalacturonase-2 OS=Solanum lycopersicum OX=4081 GN=PG2 PE=1 SV=1)

HSP 1 Score: 263.462 bits (672), Expect = 1.495e-82
Identity = 160/371 (43.13%), Postives = 214/371 (57.68%), Query Frame = 1
Query:   55 IPKVDIGGPCRSKIILTISGTIVAPQDPAVWLGLDQRKWLYFHGVNHLTVDGGGSVNGMGEEWWARSCKINSTNVLLPGKLKLIFSSSLINCVTKVASKCPFAAMSSCSNAEYETTLTLQALTFHRCKDLKVRNLMLINSQRMHLSFTNCMRVVASHLKVLAPAFSPNTDGIHISASKGVQVRDSVIRTGDDCISIVRNSSRVWIRNIYCGPGHGISIGSLGKLKTWESVQNVIVEGAYLYNTDNGLRIKTWQGGSGLASKITFQNILMENVSNPIIIDQYYCDSQHPCENQTSAVRVENISFIDVQGTSASDEAIKFACSDISPCEDLYLENIFLVSCFGGNTNSFCWQAHGSARGFLYPP-TCFSISDD 1164
            + ++   GPCRS I + I G++ A    + +   D+R W+ F  V +L V GGG++NG G+ WW  SCKIN +   LP                             C +A         ALTF  CK+LKV NL   N+Q++H+ F +C  VVAS+L + A A SPNTDG+H+S ++ +Q+ D++I TGDDCISIV  S  V   NI CGPGHGISIGSLG   +   V NV V  A +   +NG+RIKTWQGGSG AS I F N+ M++V  PIIIDQ YCD   PC  Q SAV+V+N+ + +++GTSA+  AIKF CS   PCE + +ENI LV   G  + + C   H +    + P  T   IS+D
Sbjct:  121 LKQITFSGPCRSSISVKIFGSLEASSKISDYK--DRRLWIAFDSVQNLVVGGGGTINGNGQVWWPSSCKINKS---LP-----------------------------CRDAP-------TALTFWNCKNLKVNNLKSKNAQQIHIKFESCTNVVASNLMINASAKSPNTDGVHVSNTQYIQISDTIIGTGDDCISIVSGSQNVQATNITCGPGHGISIGSLGSGNSEAYVSNVTVNEAKIIGAENGVRIKTWQGGSGQASNIKFLNVEMQDVKYPIIIDQNYCDRVEPCIQQFSAVQVKNVVYENIKGTSATKVAIKFDCSTNFPCEGIIMENINLVGESGKPSEATCKNVHFNNAEHVTPHCTSLEISED 450          
BLAST of LR48_mrnaVigan05g218600 vs. DB:Swiss
Match: ADPG2_ARATH (Polygalacturonase ADPG2 OS=Arabidopsis thaliana OX=3702 GN=ADPG2 PE=2 SV=2)

HSP 1 Score: 259.61 bits (662), Expect = 2.255e-81
Identity = 156/363 (42.98%), Postives = 208/363 (57.30%), Query Frame = 1
Query:   55 IPKVDIGGPCRSKIILTISGTIVAPQDPAVWLGLDQRKWLYFHGVNHLTVDGG--GSVNGMGEEWWARSCKINSTNVLLPGKLKLIFSSSLINCVTKVASKCPFAAMSSCSNAEYETTLTLQALTFHRCKDLKVRNLMLINSQRMHLSFTNCMRVVASHLKVLAPAFSPNTDGIHISASKGVQVRDSVIRTGDDCISIVRNSSRVWIRNIYCGPGHGISIGSLGKLKTWESVQNVIVEGAYLYNTDNGLRIKTWQGGSGLASKITFQNILMENVSNPIIIDQYYCDSQHPCENQTSAVRVENISFIDVQGTSASDEAIKFACSDISPCEDLYLENIFLVSCFGGNTNSFCWQAHGSARGFLYP 1137
            +  + + GPC S + + I GT+ A Q  + +   D  KW+ F GVN+L+VDGG  G V+G GE WW  SCK N                       K  +K P                   ALTF+  K L V+NL + N+Q++ +S   C  V  S++ V APA SPNTDGIHI+ ++ ++V +S+I TGDDCISI   S  V I +I CGPGHGISIGSLG   +   V  V V+GA L  TDNG+RIKT+QGGSG AS I FQNI M+NV NPIIIDQ YCD +  C  + SAV+V+N+ + D+ GTSAS+ AI F CS   PC+ + L+ + +    GG   + C  A+   +G + P
Sbjct:  113 LKSIQLTGPCNSILTVQIFGTLSASQKRSDYK--DISKWIMFDGVNNLSVDGGDTGVVDGNGETWWQNSCKRNKA---------------------KPCTKAP------------------TALTFYNSKSLIVKNLKVRNAQQIQISIEKCSNVQVSNVVVTAPADSPNTDGIHITNTQNIRVSESIIGTGDDCISIESGSQNVQINDITCGPGHGISIGSLGDDNSKAFVSGVTVDGAKLSGTDNGVRIKTYQGGSGTASNIIFQNIQMDNVKNPIIIDQDYCD-KSKCTTEKSAVQVKNVVYRDISGTSASENAITFNCSKNYPCQGIVLDRVNIK---GG--KATCTNANVVDKGAVLP 428          
BLAST of LR48_mrnaVigan05g218600 vs. DB:Swiss
Match: ADPG1_ARATH (Polygalacturonase ADPG1 OS=Arabidopsis thaliana OX=3702 GN=ADPG1 PE=2 SV=1)

HSP 1 Score: 253.062 bits (645), Expect = 5.917e-79
Identity = 145/356 (40.73%), Postives = 204/356 (57.30%), Query Frame = 1
Query:   76 GPCRSKIILTISGTIVAPQDPAVWLGLDQRKWLYFHGVNHLTVDGG--GSVNGMGEEWWARSCKINSTNVLLPGKLKLIFSSSLINCVTKVASKCPFAAMSSCSNAEYETTLTLQALTFHRCKDLKVRNLMLINSQRMHLSFTNCMRVVASHLKVLAPAFSPNTDGIHISASKGVQVRDSVIRTGDDCISIVRNSSRVWIRNIYCGPGHGISIGSLGKLKTWESVQNVIVEGAYLYNTDNGLRIKTWQGGSGLASKITFQNILMENVSNPIIIDQYYCDSQHPCENQTSAVRVENISFIDVQGTSASDEAIKFACSDISPCEDLYLENIFLVSCFGGNTNSFCWQAHGSARGFLYP 1137
            GPC+S     I GT+ A    + +   D+  WL    VN+L++DGG  G +NG G+ WW  SCKI+                      +K  +K P                   ALT +  K+L V+NL + N+Q++ +S   C +V  S++++ AP  SPNTDGIHI+ ++ ++V +S I TGDDCISI   +  + I ++ CGPGHGISIGSLG   +   V  + V+GA    +DNG+RIKT+QGGSG A  I FQNI MENV NPIIIDQ YCD +  CE+Q SAV+V+N+ + ++ GTSA+D AI   CS+  PC+ + LEN+ +     G T S C  A+   +G + P
Sbjct:  120 GPCKSLRNFQILGTLSASTKRSDYK--DKNHWLILEDVNNLSIDGGSTGIINGNGKTWWQNSCKIDK---------------------SKPCTKAP------------------TALTLYNLKNLNVKNLRVKNAQQIQISIEKCNKVEVSNVEITAPGDSPNTDGIHITNTQNIRVSNSDIGTGDDCISIEDGTQNLQIFDLTCGPGHGISIGSLGDDNSKAYVSGINVDGAKFSESDNGVRIKTYQGGSGTAKNIKFQNIRMENVKNPIIIDQDYCD-KDKCEDQESAVQVKNVVYKNISGTSATDVAITLNCSEKYPCQGIVLENVKI----KGGTAS-CKNANVKNQGTVSP 428          
BLAST of LR48_mrnaVigan05g218600 vs. DB:Swiss
Match: PGLR2_CHAOB (Polygalacturonase OS=Chamaecyparis obtusa OX=13415 PE=1 SV=1)

HSP 1 Score: 244.973 bits (624), Expect = 8.713e-75
Identity = 140/357 (39.22%), Postives = 190/357 (53.22%), Query Frame = 1
Query:   76 GPCRSKIILTISGTIVAPQDPAVWLGLDQRKWLYFHGVNHLTVDGGGSVNGMGEEWWARSCKINSTNVLLPGKLKLIFSSSLINCVTKVASKCPFAAMSSCSNAEYETTLTLQALTFHRCKDLKVRNLMLINSQRMHLSFTNCMRVVASHLKVLAPAFSPNTDGIHISASKGVQVRDSVIRTGDDCISIVRNSSRVWIRNIYCGPGHGISIGSLGKLKTWESVQNVIVEGAYLYNTDNGLRIKTWQGGSGLASKITFQNILMENVSNPIIIDQYYCDSQHPCENQTSAVRVENISFIDVQGTSASDEAIKFACSDISPCEDLYLENIFLVSCFGGNTNSFCWQAHGSARGFLYPPTC 1146
            GPC+  +   + GTIVA  DPA W   + + WL F  +    + G G ++G G++WWA  CK+                                   + C++    T     A+     K + V+ L L+NS   HL F  C  V    LK+ AP  SPNTDGI I ASK   +   VI TGDDCI+I   SS + I+++ CGPGHGISIGSLG+  +   V +V V  A   +T NGLRIKTWQGGSGLAS IT++N+ M N  NPI+I+Q+YC S   C+NQ SAV+++ +++ ++ GTSA+  AI+  CSD  PC  + L N+ L    G   +     A G   G L  PTC
Sbjct:  110 GPCQPHLSFKVDGTIVAQPDPARWK--NSKIWLQFAQLTDFNLMGTGVIDGQGQQWWAGQCKV-------------------------------VNGRTVCNDRNRPT-----AIKIDYSKSVTVKELTLMNSPEFHLVFGECEGVKIQGLKIKAPRDSPNTDGIDIFASKRFHIEKCVIGTGDDCIAIGTGSSNITIKDLICGPGHGISIGSLGRDNSRAEVSHVHVNRAKFIDTQNGLRIKTWQGGSGLASYITYENVEMINSENPILINQFYCTSASACQNQRSAVQIQGVTYKNIHGTSATAAAIQLMCSDSVPCTGIQLSNVSLKLTSGKPASCVDKNARGFYSGRLI-PTC 427          
BLAST of LR48_mrnaVigan05g218600 vs. DB:Swiss
Match: PGLR2_CRYJA (Polygalacturonase OS=Cryptomeria japonica OX=3369 PE=1 SV=1)

HSP 1 Score: 242.662 bits (618), Expect = 6.793e-74
Identity = 134/348 (38.51%), Postives = 190/348 (54.60%), Query Frame = 1
Query:   76 GPCRSKIILTISGTIVAPQDPAVWLGLDQRKWLYFHGVNHLTVDGGGSVNGMGEEWWARSCK-INSTNVLLPGKLKLIFSSSLINCVTKVASKCPFAAMSSCSNAEYETTLTLQALTFHRCKDLKVRNLMLINSQRMHLSFTNCMRVVASHLKVLAPAFSPNTDGIHISASKGVQVRDSVIRTGDDCISIVRNSSRVWIRNIYCGPGHGISIGSLGKLKTWESVQNVIVEGAYLYNTDNGLRIKTWQGGSGLASKITFQNILMENVSNPIIIDQYYCDSQHPCENQTSAVRVENISFIDVQGTSASDEAIKFACSDISPCEDLYLENIFL-------VSCFGGNTNSF 1095
            GPC+      + G I A Q+PA W   + R WL F  +   T+ G G ++G G++WWA  CK +N   +                                C++ +  T     A+ F     L ++ L L+NS   HL F NC  V    + + AP  SPNTDGI I ASK   ++ + I TGDDC++I   SS + I ++ CGPGHGISIGSLG+  +   V  V V GA   +T NGLRIKTWQGGSG+AS I ++N+ M N  NPI+I+Q+YC S   C+NQ SAV+++++++ +++GTSA+  AI+  CSD  PC+D+ L +I L        SC   N N +
Sbjct:  110 GPCQPHFTFKVDGIIAAYQNPASWK--NNRIWLQFAKLTGFTLMGKGVIDGQGKQWWAGQCKWVNGREI--------------------------------CNDRDRPT-----AIKFDFSTGLIIQGLKLMNSPEFHLVFGNCEGVKIIGISITAPRDSPNTDGIDIFASKNFHLQKNTIGTGDDCVAIGTGSSNIVIEDLICGPGHGISIGSLGRENSRAEVSYVHVNGAKFIDTQNGLRIKTWQGGSGMASHIIYENVEMINSENPILINQFYCTSASACQNQRSAVQIQDVTYKNIRGTSATAAAIQLKCSDSMPCKDIKLSDISLKLTSGKIASCLNDNANGY 418          
The following BLAST results are available for this feature:
BLAST of LR48_mrnaVigan05g218600 vs. DB:Swiss
Analysis Date: 2020-05-21 (BLAST: V. angularis Jingnong 6 genome v1.1)
Total hits: 10
Match NameE-valueIdentityDescription
PGLR5_ARATH1.780e-14653.61Probable polygalacturonase At1g80170 OS=Arabidopsi... [more]
PGLR_PERAE1.689e-10046.55Polygalacturonase OS=Persea americana OX=3435 PE=2... [more]
PGLR_ACTDE1.727e-9243.28Polygalacturonase OS=Actinidia deliciosa OX=3627 P... [more]
QRT2_ARATH5.846e-8742.78Polygalacturonase QRT2 OS=Arabidopsis thaliana OX=... [more]
PGLR_MALDO1.102e-8442.06Polygalacturonase OS=Malus domestica OX=3750 PE=2 ... [more]
PGLR_SOLLC1.495e-8243.13Polygalacturonase-2 OS=Solanum lycopersicum OX=408... [more]
ADPG2_ARATH2.255e-8142.98Polygalacturonase ADPG2 OS=Arabidopsis thaliana OX... [more]
ADPG1_ARATH5.917e-7940.73Polygalacturonase ADPG1 OS=Arabidopsis thaliana OX... [more]
PGLR2_CHAOB8.713e-7539.22Polygalacturonase OS=Chamaecyparis obtusa OX=13415... [more]
PGLR2_CRYJA6.793e-7438.51Polygalacturonase OS=Cryptomeria japonica OX=3369 ... [more]
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InterPro
Analysis Name: InterProScan: Vigna angularis Jingnong 6 genome v1.1
Date Performed: 2020-05-21
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006626Parallel beta-helix repeatSMARTSM00710pbh1coord: 277..298
e-value: 3600.0
score: 3.3
coord: 248..269
e-value: 120.0
score: 11.5
coord: 195..216
e-value: 100.0
score: 11.7
coord: 218..238
e-value: 1400.0
score: 6.1
coord: 145..194
e-value: 8700.0
score: 0.5
IPR000743Glycoside hydrolase, family 28PFAMPF00295Glyco_hydro_28coord: 126..366
e-value: 2.8E-76
score: 256.6
IPR000743Glycoside hydrolase, family 28PROSITEPS00502POLYGALACTURONASEcoord: 225..238
IPR011050Pectin lyase fold/virulence factorSUPERFAMILY51126Pectin lyase-likecoord: 20..383

Sequences
The following sequences are available for this feature:

mRNA sequence

>LR48_mrnaVigan05g218600_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan05g218600_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan05g218600; organism=Vigna angularis; type=mRNA; length=2670bp
ATGGAAATTGGATTGGAATTTCTATTTCATCCAGACTTTCTGAGTGTTCT
TCATATTCCAAAaggtttgttttttattttttattttttaatttgtattt
atgaCTGTTTGTTCGAGATCTCTTTCAGTCTATgtcattaaaaagaaaac
ctttcaaatttctaccattttctttttgtaataataatggCCATGAAAAA
GATTTGATTAAAAAACATCTGGGGAAACTTTTCTTATCTATCCAGTGGAC
ATTGGTGGACCTTGTCGATCTAAGATTATTTTGACGGTAAGCTCACAGAG
TCAAATCTCTCACATGTTGAAGAAAATTCTTGTCATGAGGTTCTTTACAG
AAAATATGCACTCaattgattttcaaatttgttataGATATCAGGTACTA
TAGTTGCACCCCAAGATCCTGCTGTGTGGCTTGGTTTAGATCAGCGCAAA
TGGCTTTACTTCCATGGGGTGAATCACCTCACTGTTGATGGTGGAGGGAG
TGTCAATGGAATGGGAGAGGAATGGTGGGCCAGATCTTGCAAGATCAACT
CCACAAATGTATTGCTTCCTGGAAagcttaaattaatattttcttcaagT
TTAATAAACTGTGTTACTAAAGTGGCTTCAAAATGTCCTTTCGCAGCCAT
GTCATCCTGCTCCAACGGTTAGTGCCGCTTCAAATATATGGAGCAAACCA
GATCGTTTTCCCTCATCTGATATTTCCTATGTGTCTTATTAGCTGAATAT
GAAACAACATTGACACTGCAGGCTCTGACTTTTCATAGATGCAAGGATCT
AAAAGTTAGAAATCTCATGCTGATAAATAGCCAACGAATGCACTTGTCAT
TCACTAACTGTATGCGGGTTGTTGCATCCCATCTCAAAGTATTAGCACCT
GCTTTCAGCCCTAATACTGATGGAATCCATATTAGTGCATCAAAGGGAGT
TCAGGTCAGGGATAGTGTAATTAGAACAGGTACTGCTGTAAAGTTATTTT
CTACAAACTGTCATTTTAGGCTTGAATGATATTATGGTTTAAACggtaat
ttatatatgttatttaccTTGAAATAGCGATTgtcatataattattaaat
aattagcCATATTACAGAACACACACATATATCTCATGTTAATAAAAATC
AAGTTAAGCAGAATGACACCAGTTTAAATGGTTTTGAAACCGTATGGTaa
caaagaaatgaaagaataaagTAAATATCTGATTAGCTTTTTGTTGTCAT
GGATTGTGAAGGTGtctggattttttttcttcgttGGTGCTAAAAGCTTT
CTGAAGTTAATGGTTTGCATGTCAATTCTTACTTGTTACTTTCAGGATGT
ATAGCCTTTCATTAACATCGTACCAAGTTTGATTTGTCGTTAAGAGACAA
GAAAAaccagaagaaaaaaatatgcaaaacatgaaaaataacagGCAAAA
TGTAATTGTGAAAAACTATGCATGTTGCAGAATTTGGACGAAAGCTAAGT
CTAAGTGCAATGATTACTTTCATCACTTACATTATGTTCCAGAATAAACT
TTGGTGGTCAAACGATATACCAAAAGCAAAATAATTATgttcattatttt
caatttcaggTGATGATTGCATTTCAATAGTTAGAAATTCTTCTCGGGTC
TGGATCAGAAACATCTATTGTGGTCCTGGCCATGGGATAAGGTGAAAGca
actttcatttttcaattctcAAAACATTTTAAGTGGTATAATTGATTTAA
CTGATCCTGGAGCCTATTTTTTCAGCATCGGTAGCTTGGGAAAATTAAAG
ACATGGGAAAGTGTGCAAAATGTAATTGTGGAGGGAGCTTACCTTTACAA
CACAGATAATGGGTTGAGGATCAAAACATGGCAGGTGAGTTTCTTGACAA
CTGTAGCACTTTCTTTTTATAGCCACCCTGCAATGTACACATTTTCGTCA
AAACTTGTCTTCTGTCAAATTTTCGTCAGGGTGGTAGTGGTCTGGCCTCG
AAGATCACCTTCCAGAATATATTGATGGAAAATGTGTCTAATCCAATAAT
AATAGATCAATACTACTGTGATTCGCAACATCCATGTGAAAACCAGGTAT
GGAATTTTTGGATGTTTTTGCAAGCACATTCTATAAACTTGCCTTTATGT
GGAAATATGCATTATAGTTGTATGGGGCAAATTTTTGAGAAACAGTcttc
ataaagaaaaattattatttggaGAATATACTTTGCAGTAACCcttgatt
tttctttcaaaatttattcCAAACAACCGAGGGACTTAGCTTCTAGAATT
GATAGAAAAGTTCAAATTTGTAGTAACCTATACTGAAGCTCAAATATGCT
GCAAGAATGTAATTTAATGTATCAAATTACAGACTTCGGCTGTCAGAGTG
GAGAATATATCCTTCATTGATGTTCAAGGAACTTCAGCCTCTGATGAAGC
AATTAAATTTGCTTGCAGTGACATTTCTCCATGTGAAGATCTatatcttg
aaaatatttttcttgtatcATGCTTCGGAGGAAATACTAACTCTTTCTGC
TGGCAAGCTCACGGTTCTGCTCGGGGTTTCTTGTATCCTCCTACTTGTTT
CTCAATCAGTGATGATTTCATTAGACAAAATATCTTCGTAGAGTCAAACC
ATACTATTCATTCCGTTTGA
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protein sequence of LR48_mrnaVigan05g218600_Va_Jingnong6_v1.1

>LR48_mrnaVigan05g218600_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan05g218600_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan05g218600_Va_Jingnong6_v1.1; organism=Vigna angularis; type=polypeptide; length=405bp
MEIGLEFLFHPDFLSVLHIPKVDIGGPCRSKIILTISGTIVAPQDPAVWL
GLDQRKWLYFHGVNHLTVDGGGSVNGMGEEWWARSCKINSTNVLLPGKLK
LIFSSSLINCVTKVASKCPFAAMSSCSNAEYETTLTLQALTFHRCKDLKV
RNLMLINSQRMHLSFTNCMRVVASHLKVLAPAFSPNTDGIHISASKGVQV
RDSVIRTGDDCISIVRNSSRVWIRNIYCGPGHGISIGSLGKLKTWESVQN
VIVEGAYLYNTDNGLRIKTWQGGSGLASKITFQNILMENVSNPIIIDQYY
CDSQHPCENQTSAVRVENISFIDVQGTSASDEAIKFACSDISPCEDLYLE
NIFLVSCFGGNTNSFCWQAHGSARGFLYPPTCFSISDDFIRQNIFVESNH
TIHSV
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mRNA from alignment at Chr_5-CM003375.1:29774840..29777509+

Legend: polypeptidestart_codonexonCDSintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>LR48_mrnaVigan05g218600_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan05g218600_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan05g218600; organism=Vigna angularis; type=mRNA; length=2670bp; location=Sequence derived from: Chr_5-CM003375.1:29774840..29777509+ (Vigna angularis
ATGGAAATTGGATTGGAATTTCTATTTCATCCAGACTTTCTGAGTGTTCT TCATATTCCAAAaggtttgttttttattttttattttttaatttgtattt atgaCTGTTTGTTCGAGATCTCTTTCAGTCTATgtcattaaaaagaaaac ctttcaaatttctaccattttctttttgtaataataatggCCATGAAAAA GATTTGATTAAAAAACATCTGGGGAAACTTTTCTTATCTATCCAGTGGAC ATTGGTGGACCTTGTCGATCTAAGATTATTTTGACGGTAAGCTCACAGAG TCAAATCTCTCACATGTTGAAGAAAATTCTTGTCATGAGGTTCTTTACAG AAAATATGCACTCaattgattttcaaatttgttataGATATCAGGTACTA TAGTTGCACCCCAAGATCCTGCTGTGTGGCTTGGTTTAGATCAGCGCAAA TGGCTTTACTTCCATGGGGTGAATCACCTCACTGTTGATGGTGGAGGGAG TGTCAATGGAATGGGAGAGGAATGGTGGGCCAGATCTTGCAAGATCAACT CCACAAATGTATTGCTTCCTGGAAagcttaaattaatattttcttcaagT TTAATAAACTGTGTTACTAAAGTGGCTTCAAAATGTCCTTTCGCAGCCAT GTCATCCTGCTCCAACGGTTAGTGCCGCTTCAAATATATGGAGCAAACCA GATCGTTTTCCCTCATCTGATATTTCCTATGTGTCTTATTAGCTGAATAT GAAACAACATTGACACTGCAGGCTCTGACTTTTCATAGATGCAAGGATCT AAAAGTTAGAAATCTCATGCTGATAAATAGCCAACGAATGCACTTGTCAT TCACTAACTGTATGCGGGTTGTTGCATCCCATCTCAAAGTATTAGCACCT GCTTTCAGCCCTAATACTGATGGAATCCATATTAGTGCATCAAAGGGAGT TCAGGTCAGGGATAGTGTAATTAGAACAGGTACTGCTGTAAAGTTATTTT CTACAAACTGTCATTTTAGGCTTGAATGATATTATGGTTTAAACggtaat ttatatatgttatttaccTTGAAATAGCGATTgtcatataattattaaat aattagcCATATTACAGAACACACACATATATCTCATGTTAATAAAAATC AAGTTAAGCAGAATGACACCAGTTTAAATGGTTTTGAAACCGTATGGTaa caaagaaatgaaagaataaagTAAATATCTGATTAGCTTTTTGTTGTCAT GGATTGTGAAGGTGtctggattttttttcttcgttGGTGCTAAAAGCTTT CTGAAGTTAATGGTTTGCATGTCAATTCTTACTTGTTACTTTCAGGATGT ATAGCCTTTCATTAACATCGTACCAAGTTTGATTTGTCGTTAAGAGACAA GAAAAaccagaagaaaaaaatatgcaaaacatgaaaaataacagGCAAAA TGTAATTGTGAAAAACTATGCATGTTGCAGAATTTGGACGAAAGCTAAGT CTAAGTGCAATGATTACTTTCATCACTTACATTATGTTCCAGAATAAACT TTGGTGGTCAAACGATATACCAAAAGCAAAATAATTATgttcattatttt caatttcaggTGATGATTGCATTTCAATAGTTAGAAATTCTTCTCGGGTC TGGATCAGAAACATCTATTGTGGTCCTGGCCATGGGATAAGGTGAAAGca actttcatttttcaattctcAAAACATTTTAAGTGGTATAATTGATTTAA CTGATCCTGGAGCCTATTTTTTCAGCATCGGTAGCTTGGGAAAATTAAAG ACATGGGAAAGTGTGCAAAATGTAATTGTGGAGGGAGCTTACCTTTACAA CACAGATAATGGGTTGAGGATCAAAACATGGCAGGTGAGTTTCTTGACAA CTGTAGCACTTTCTTTTTATAGCCACCCTGCAATGTACACATTTTCGTCA AAACTTGTCTTCTGTCAAATTTTCGTCAGGGTGGTAGTGGTCTGGCCTCG AAGATCACCTTCCAGAATATATTGATGGAAAATGTGTCTAATCCAATAAT AATAGATCAATACTACTGTGATTCGCAACATCCATGTGAAAACCAGGTAT GGAATTTTTGGATGTTTTTGCAAGCACATTCTATAAACTTGCCTTTATGT GGAAATATGCATTATAGTTGTATGGGGCAAATTTTTGAGAAACAGTcttc ataaagaaaaattattatttggaGAATATACTTTGCAGTAACCcttgatt tttctttcaaaatttattcCAAACAACCGAGGGACTTAGCTTCTAGAATT GATAGAAAAGTTCAAATTTGTAGTAACCTATACTGAAGCTCAAATATGCT GCAAGAATGTAATTTAATGTATCAAATTACAGACTTCGGCTGTCAGAGTG GAGAATATATCCTTCATTGATGTTCAAGGAACTTCAGCCTCTGATGAAGC AATTAAATTTGCTTGCAGTGACATTTCTCCATGTGAAGATCTatatcttg aaaatatttttcttgtatcATGCTTCGGAGGAAATACTAACTCTTTCTGC TGGCAAGCTCACGGTTCTGCTCGGGGTTTCTTGTATCCTCCTACTTGTTT CTCAATCAGTGATGATTTCATTAGACAAAATATCTTCGTAGAGTCAAACC ATACTATTCATTCCGTTTGA
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Coding sequence (CDS) from alignment at Chr_5-CM003375.1:29774840..29777509+

>LR48_mrnaVigan05g218600_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan05g218600_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan05g218600; organism=Vigna angularis; type=CDS; length=1218bp; location=Sequence derived from: Chr_5-CM003375.1:29774840..29777509+ (Vigna angularis
ATGGAAATTGGATTGGAATTTCTATTTCATCCAGACTTTCTGAGTGTTCT
TCATATTCCAAAagTGGACATTGGTGGACCTTGTCGATCTAAGATTATTT
TGACGATATCAGGTACTATAGTTGCACCCCAAGATCCTGCTGTGTGGCTT
GGTTTAGATCAGCGCAAATGGCTTTACTTCCATGGGGTGAATCACCTCAC
TGTTGATGGTGGAGGGAGTGTCAATGGAATGGGAGAGGAATGGTGGGCCA
GATCTTGCAAGATCAACTCCACAAATGTATTGCTTCCTGGAAagcttaaa
ttaatattttcttcaagTTTAATAAACTGTGTTACTAAAGTGGCTTCAAA
ATGTCCTTTCGCAGCCATGTCATCCTGCTCCAACGCTGAATATGAAACAA
CATTGACACTGCAGGCTCTGACTTTTCATAGATGCAAGGATCTAAAAGTT
AGAAATCTCATGCTGATAAATAGCCAACGAATGCACTTGTCATTCACTAA
CTGTATGCGGGTTGTTGCATCCCATCTCAAAGTATTAGCACCTGCTTTCA
GCCCTAATACTGATGGAATCCATATTAGTGCATCAAAGGGAGTTCAGGTC
AGGGATAGTGTAATTAGAACAGgTGATGATTGCATTTCAATAGTTAGAAA
TTCTTCTCGGGTCTGGATCAGAAACATCTATTGTGGTCCTGGCCATGGGA
TAAGCATCGGTAGCTTGGGAAAATTAAAGACATGGGAAAGTGTGCAAAAT
GTAATTGTGGAGGGAGCTTACCTTTACAACACAGATAATGGGTTGAGGAT
CAAAACATGGCAGGGTGGTAGTGGTCTGGCCTCGAAGATCACCTTCCAGA
ATATATTGATGGAAAATGTGTCTAATCCAATAATAATAGATCAATACTAC
TGTGATTCGCAACATCCATGTGAAAACCAGACTTCGGCTGTCAGAGTGGA
GAATATATCCTTCATTGATGTTCAAGGAACTTCAGCCTCTGATGAAGCAA
TTAAATTTGCTTGCAGTGACATTTCTCCATGTGAAGATCTatatcttgaa
aatatttttcttgtatcATGCTTCGGAGGAAATACTAACTCTTTCTGCTG
GCAAGCTCACGGTTCTGCTCGGGGTTTCTTGTATCCTCCTACTTGTTTCT
CAATCAGTGATGATTTCATTAGACAAAATATCTTCGTAGAGTCAAACCAT
ACTATTCATTCCGTTTGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR006626PbH1
IPR000743Glyco_hydro_28
IPR011050Pectin_lyase_fold/virulence
Vocabulary: Molecular Function
TermDefinition
GO:0004650polygalacturonase activity
Vocabulary: Biological Process
TermDefinition
GO:0005975carbohydrate metabolic process