LR48_mrnaVigan05g218600
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following start_codon feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following intron feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
Homology
BLAST of LR48_mrnaVigan05g218600 vs. DB:Swiss
Match: PGLR5_ARATH (Probable polygalacturonase At1g80170 OS=Arabidopsis thaliana OX=3702 GN=At1g80170 PE=1 SV=1) HSP 1 Score: 426.402 bits (1095), Expect = 1.780e-146 Identity = 208/388 (53.61%), Postives = 273/388 (70.36%), Query Frame = 1 Query: 22 LFHPDFLSVLHIPKVDIGGPCRSKIILTISGTIVAPQDPAVWLGLDQRKWLYFHGVNHLTVDGGGSVNGMGEEWWARSCKINSTNVLLPGKLKLIFSSSLINCVTKVASKCPFAAMSSCSNAEYETTLTLQALTFHRCKDLKVRNLMLINSQRMHLSFTNCMRVVASHLKVLAPAFSPNTDGIHISASKGVQVRDSVIRTGDDCISIVRNSSRVWIRNIYCGPGHGISIGSLGKLKTWESVQNVIVEGAYLYNTDNGLRIKTWQGGSGLASKITFQNILMENVSNPIIIDQYYCDSQHPCENQTSAVRVENISFIDVQGTSASDEAIKFACSDISPCEDLYLENIFLVSCFG-GNTNSFCWQAHGSARGFLYPPTCFSISDDFIRQNI 1182 + P+ + L P +D+ GPC++++ L ISGTI+AP DP VW GL++RKWLYFHG++ LTV+GGG+VNGMG+EWW RSCK N +N C A ALTFH+CK+++V NL +I+SQ+MH++ T+C RV S LKV+APA SPNTDGIHIS S+G+ + ++ + TGDDCISIV+NS+++ I NI CGPGHGISIGSLGK K+WE V+++ V+ A + +T NG+RIKTWQGGSGL SKI F+NI M NVSNPIIIDQYYCDS+ PC NQTSA+ +ENISF+ V+GTSAS EAIK +CSD SPC ++ L++I L G G T SFCW+A+GS+ G +YPP C S F+ Q++ Sbjct: 88 ILVPENYTCLLRP-IDLSGPCKARLTLQISGTIIAPNDPDVWEGLNRRKWLYFHGLSRLTVEGGGTVNGMGQEWWERSCKHNHSN--------------------------------PCRGAP-------TALTFHKCKNMRVENLNVIDSQQMHIALTSCRRVTISGLKVIAPATSPNTDGIHISVSRGIVIDNTTVSTGDDCISIVKNSTQISISNIICGPGHGISIGSLGKSKSWEEVRDITVDTAIISDTANGVRIKTWQGGSGLVSKIIFRNIKMNNVSNPIIIDQYYCDSRKPCANQTSAISIENISFVHVRGTSASKEAIKISCSDSSPCRNILLQDIDLEPSNGDGFTESFCWEAYGSSSGQVYPPPCLSDDTSFLEQSV 435
BLAST of LR48_mrnaVigan05g218600 vs. DB:Swiss
Match: PGLR_PERAE (Polygalacturonase OS=Persea americana OX=3435 PE=2 SV=1) HSP 1 Score: 309.686 bits (792), Expect = 1.689e-100 Identity = 162/348 (46.55%), Postives = 215/348 (61.78%), Query Frame = 1 Query: 55 IPKVDIGGPCRSKIILTISGTIVAPQDPAVWLGLDQRKWLYFHGVNHLTVDGGGSVNGMGEEWWARSCKINSTNVLLPGKLKLIFSSSLINCVTKVASKCPFAAMSSCSNAEYETTLTLQALTFHRCKDLKVRNLMLINSQRMHLSFTNCMRVVASHLKVLAPAFSPNTDGIHISASKGVQVRDSVIRTGDDCISIVRNSSRVWIRNIYCGPGHGISIGSLGKLKTWESVQNVIVEGAYLYNTDNGLRIKTWQGGSGLASKITFQNILMENVSNPIIIDQYYCDSQHPCENQTSAVRVENISFIDVQGTSASDEAIKFACSDISPCEDLYLENIFLVSCFGGNTNSFC 1098 + ++ GPC+S + + I GTI A D + W+G ++++W+ F +++LT++GGG+ NG GE WW SCK + LP C +A ALTF CK+L V +L + +SQ+MHLSF C V+AS+L V AP SPNTDGIHI+ ++ + V +SVI TGDDCISI S V NI CGPGHGISIGSLG + V V+V+G L++T NGLRIKTWQGGSG A I FQNI+M NV+NPIIIDQYYCDS+ PC Q SAV+V N+++++++GTSAS+ A+KF CS SPC+ + NI LV G T C Sbjct: 127 LKQITFSGPCKSDLRVKIRGTIEASSDQSDWVGHNRKRWIEFEDISNLTLEGGGTSNGNGETWWDSSCKRKKS---LP-----------------------------CKSAP-------TALTFRSCKNLIVSDLSIKDSQKMHLSFDKCQDVIASNLMVTAPEHSPNTDGIHITGTQRIHVMNSVIGTGDDCISIESGSKMVIATNITCGPGHGISIGSLGDRNSEAHVSGVLVDGGNLFDTTNGLRIKTWQGGSGSAKNIKFQNIVMHNVTNPIIIDQYYCDSKDPCPEQESAVKVSNVAYMNIRGTSASEVAVKFDCSKSSPCQGYIVGNINLVGNGGKETTMSC 435
BLAST of LR48_mrnaVigan05g218600 vs. DB:Swiss
Match: PGLR_ACTDE (Polygalacturonase OS=Actinidia deliciosa OX=3627 PE=2 SV=1) HSP 1 Score: 289.271 bits (739), Expect = 1.727e-92 Identity = 161/372 (43.28%), Postives = 216/372 (58.06%), Query Frame = 1 Query: 43 SVLHIPK-------VDIGGPCRSKIILTISGTIVAPQDPAVWLGLDQRKWLYFHGVNHLTVDGGGSVNGMGEEWWARSCKINSTNVLLPGKLKLIFSSSLINCVTKVASKCPFAAMSSCSNAEYETTLTLQALTFHRCKDLKVRNLMLINSQRMHLSFTNCMRVVASHLKVLAPAFSPNTDGIHISASKGVQVRDSVIRTGDDCISIVRNSSRVWIRNIYCGPGHGISIGSLGKLKTWESVQNVIVEGAYLYNTDNGLRIKTWQGGSGLASKITFQNILMENVSNPIIIDQYYCDSQHPCENQTSAVRVENISFIDVQGTSASDEAIKFACSDISPCEDLYLENIFLVSCFGGNTNSFCWQAHGSARGFLYP 1137 +VL +PK + GPC+S + + I GTI A D + + D R WL F V +L V+GGG++NG G+ WW SCK TN LP C +A ALTF++ K + V+NL + N+Q++H+SF NC+ V AS+L V AP SPNTDGIH++ ++ + + VI TGDDCISIV S +V + +I CGPGHGISIGSLG + V +V+V GA L T NG+RIKTWQGGSG AS I FQN+ M NV NPIIIDQ YCD PC+ Q+SAV+V+N+ + +++GT AS+ AI F CS PC+ + LE++ L G + C S G + P Sbjct: 122 AVLLVPKKNYLVRPISFSGPCKSGLTMQIYGTIEASDDRSDYR-KDGRHWLVFDSVQNLRVEGGGTINGNGKIWWQNSCK---TNKALP-----------------------------CKDAP-------TALTFYKSKHVIVKNLKIENAQQIHVSFDNCVNVQASNLMVTAPENSPNTDGIHVTGTQNIHISSCVIGTGDDCISIVNGSRKVRVNDITCGPGHGISIGSLGYGNSEAHVSDVVVNGAKLCGTTNGVRIKTWQGGSGSASNIKFQNVEMHNVENPIIIDQNYCDQDKPCQEQSSAVQVKNVVYQNIKGTCASNVAITFDCSKRFPCQGIVLEDVDLEIEGGAAAKALCNNVELSETGVVSP 453
BLAST of LR48_mrnaVigan05g218600 vs. DB:Swiss
Match: QRT2_ARATH (Polygalacturonase QRT2 OS=Arabidopsis thaliana OX=3702 GN=QRT2 PE=1 SV=2) HSP 1 Score: 274.248 bits (700), Expect = 5.846e-87 Identity = 151/353 (42.78%), Postives = 208/353 (58.92%), Query Frame = 1 Query: 10 GLEFLFHPDFLSVLHIPKVDIGGPCRSK-IILTISGTIVAPQDPAVWLGLDQRKWLYFHGVNHLTVDGGGSVNGMGEEWWARSCKINSTNVLLPGKLKLIFSSSLINCVTKVASKCPFAAMSSCSNAEYETTLTLQALTFHRCKDLKVRNLMLINSQRMHLSFTNCMRVVASHLKVLAPAFSPNTDGIHISASKGVQVRDSVIRTGDDCISIVRNSSRVWIRNIYCGPGHGISIGSLGKLKTWESVQNVIVEGAYLYNTDNGLRIKTWQGGSGLASKITFQNILMENVSNPIIIDQYYCDSQHPCENQTSAVRVENISFIDVQGTSASDEAIKFACSDISPCEDLYLENIFLV 1065 G+ ++ P + + V GPC+S II I G I A ++P+ + ++R W+ F VN+L V+GGG ++G G WW +SCKIN LP C A A+TF C +L+V N+ L N+Q+MHL+F +C V A +L V +PA SPNTDGIH+S ++ + ++DS++RTGDDCISIV S V I CGPGHGISIGSLG+ + V NV+V A L T NG+RIKTWQGG G+A I FQ+I+M+NV+NPIII+Q YCD C Q SAV+V N+ + ++QGTS+ A+KF CS PC + ++N+ LV Sbjct: 101 GIVYIVAPKNRDYM-LKAVTFSGPCKSSLIIFKIYGRIEAWENPSDYK--ERRHWIVFENVNNLRVEGGGRIDGNGHIWWPKSCKINPQ---LP-----------------------------CLGAP-------TAVTFVECNNLRVSNIRLENAQQMHLTFQDCKNVKALNLMVTSPADSPNTDGIHVSGTQNILIQDSIVRTGDDCISIVSGSENVRATGITCGPGHGISIGSLGEDNSEAYVSNVVVNKATLIGTTNGVRIKTWQGGHGMAKNIIFQDIIMKNVTNPIIINQDYCDRVEACPEQKSAVQVSNVLYKNIQGTSSRPIAVKFVCSKNIPCRGISMQNVKLV 411
BLAST of LR48_mrnaVigan05g218600 vs. DB:Swiss
Match: PGLR_MALDO (Polygalacturonase OS=Malus domestica OX=3750 PE=2 SV=1) HSP 1 Score: 268.855 bits (686), Expect = 1.102e-84 Identity = 151/359 (42.06%), Postives = 209/359 (58.22%), Query Frame = 1 Query: 64 VDIGGPCRSKIILTISGTIVAPQDPAVWLGLDQRKWLYFHGVNHLTVDGGGSVNGMGEEWWARSCKINSTNVLLPGKLKLIFSSSLINCVTKVASKCPFAAMSSCSNAEYETTLTLQALTFHRCKDLKVRNLMLINSQRMHLSFTNCMRVVASHLKVLAPAFSPNTDGIHISASKGVQVRDSVIRTGDDCISIVRNSSRVWIRNIYCGPGHGISIGSLGKLKTWESVQNVIVEGAYLYNTDNGLRIKTWQGGSGLASKITFQNILMENVSNPIIIDQYYCDSQ-HPCENQTSAVRVENISFIDVQGTSASDEAIKFACSDISPCEDLYLENIFLVSCFGGNTNSFCWQAHGSARGFLYP 1137 ++ GPC+S++ L I GTI A +D +++ +D WL F V +L V G G++NG G WW SCKI K C Y T A+TF+RC +L V+NL + ++Q++H+ F NC+ V AS L V AP SPNTDGIH++ ++ + + SVI TGDDCISIV S RV +I CGPGHGISIGSLG+ + + V V V GA L T NGLRIKTW+GGSG A+ I FQN+ M +V+NPIIIDQ YCD + C+ Q SAV+V+N+ + +++GTSAS +AI CS PC+ + L+++ L N + C + +G + P Sbjct: 145 IEFSGPCKSQLTLQIYGTIEASEDRSIYKDIDH--WLIFDNVQNLLVVGPGTINGNGNIWWKNSCKI------------------------KPQPPC----------GTYAPT----AVTFNRCNNLVVKNLNIQDAQQIHVIFQNCINVQASCLTVTAPEDSPNTDGIHVTNTQNITISSSVIGTGDDCISIVSGSQRVQATDITCGPGHGISIGSLGEDGSEDHVSGVFVNGAKLSGTSNGLRIKTWKGGSGSATNIVFQNVQMNDVTNPIIIDQNYCDHKTKDCKQQKSAVQVKNVLYQNIRGTSASGDAITLNCSQSVPCQGIVLQSVQL-----QNGRAECNNVQPAYKGVVSP 458
BLAST of LR48_mrnaVigan05g218600 vs. DB:Swiss
Match: PGLR_SOLLC (Polygalacturonase-2 OS=Solanum lycopersicum OX=4081 GN=PG2 PE=1 SV=1) HSP 1 Score: 263.462 bits (672), Expect = 1.495e-82 Identity = 160/371 (43.13%), Postives = 214/371 (57.68%), Query Frame = 1 Query: 55 IPKVDIGGPCRSKIILTISGTIVAPQDPAVWLGLDQRKWLYFHGVNHLTVDGGGSVNGMGEEWWARSCKINSTNVLLPGKLKLIFSSSLINCVTKVASKCPFAAMSSCSNAEYETTLTLQALTFHRCKDLKVRNLMLINSQRMHLSFTNCMRVVASHLKVLAPAFSPNTDGIHISASKGVQVRDSVIRTGDDCISIVRNSSRVWIRNIYCGPGHGISIGSLGKLKTWESVQNVIVEGAYLYNTDNGLRIKTWQGGSGLASKITFQNILMENVSNPIIIDQYYCDSQHPCENQTSAVRVENISFIDVQGTSASDEAIKFACSDISPCEDLYLENIFLVSCFGGNTNSFCWQAHGSARGFLYPP-TCFSISDD 1164 + ++ GPCRS I + I G++ A + + D+R W+ F V +L V GGG++NG G+ WW SCKIN + LP C +A ALTF CK+LKV NL N+Q++H+ F +C VVAS+L + A A SPNTDG+H+S ++ +Q+ D++I TGDDCISIV S V NI CGPGHGISIGSLG + V NV V A + +NG+RIKTWQGGSG AS I F N+ M++V PIIIDQ YCD PC Q SAV+V+N+ + +++GTSA+ AIKF CS PCE + +ENI LV G + + C H + + P T IS+D Sbjct: 121 LKQITFSGPCRSSISVKIFGSLEASSKISDYK--DRRLWIAFDSVQNLVVGGGGTINGNGQVWWPSSCKINKS---LP-----------------------------CRDAP-------TALTFWNCKNLKVNNLKSKNAQQIHIKFESCTNVVASNLMINASAKSPNTDGVHVSNTQYIQISDTIIGTGDDCISIVSGSQNVQATNITCGPGHGISIGSLGSGNSEAYVSNVTVNEAKIIGAENGVRIKTWQGGSGQASNIKFLNVEMQDVKYPIIIDQNYCDRVEPCIQQFSAVQVKNVVYENIKGTSATKVAIKFDCSTNFPCEGIIMENINLVGESGKPSEATCKNVHFNNAEHVTPHCTSLEISED 450
BLAST of LR48_mrnaVigan05g218600 vs. DB:Swiss
Match: ADPG2_ARATH (Polygalacturonase ADPG2 OS=Arabidopsis thaliana OX=3702 GN=ADPG2 PE=2 SV=2) HSP 1 Score: 259.61 bits (662), Expect = 2.255e-81 Identity = 156/363 (42.98%), Postives = 208/363 (57.30%), Query Frame = 1 Query: 55 IPKVDIGGPCRSKIILTISGTIVAPQDPAVWLGLDQRKWLYFHGVNHLTVDGG--GSVNGMGEEWWARSCKINSTNVLLPGKLKLIFSSSLINCVTKVASKCPFAAMSSCSNAEYETTLTLQALTFHRCKDLKVRNLMLINSQRMHLSFTNCMRVVASHLKVLAPAFSPNTDGIHISASKGVQVRDSVIRTGDDCISIVRNSSRVWIRNIYCGPGHGISIGSLGKLKTWESVQNVIVEGAYLYNTDNGLRIKTWQGGSGLASKITFQNILMENVSNPIIIDQYYCDSQHPCENQTSAVRVENISFIDVQGTSASDEAIKFACSDISPCEDLYLENIFLVSCFGGNTNSFCWQAHGSARGFLYP 1137 + + + GPC S + + I GT+ A Q + + D KW+ F GVN+L+VDGG G V+G GE WW SCK N K +K P ALTF+ K L V+NL + N+Q++ +S C V S++ V APA SPNTDGIHI+ ++ ++V +S+I TGDDCISI S V I +I CGPGHGISIGSLG + V V V+GA L TDNG+RIKT+QGGSG AS I FQNI M+NV NPIIIDQ YCD + C + SAV+V+N+ + D+ GTSAS+ AI F CS PC+ + L+ + + GG + C A+ +G + P Sbjct: 113 LKSIQLTGPCNSILTVQIFGTLSASQKRSDYK--DISKWIMFDGVNNLSVDGGDTGVVDGNGETWWQNSCKRNKA---------------------KPCTKAP------------------TALTFYNSKSLIVKNLKVRNAQQIQISIEKCSNVQVSNVVVTAPADSPNTDGIHITNTQNIRVSESIIGTGDDCISIESGSQNVQINDITCGPGHGISIGSLGDDNSKAFVSGVTVDGAKLSGTDNGVRIKTYQGGSGTASNIIFQNIQMDNVKNPIIIDQDYCD-KSKCTTEKSAVQVKNVVYRDISGTSASENAITFNCSKNYPCQGIVLDRVNIK---GG--KATCTNANVVDKGAVLP 428
BLAST of LR48_mrnaVigan05g218600 vs. DB:Swiss
Match: ADPG1_ARATH (Polygalacturonase ADPG1 OS=Arabidopsis thaliana OX=3702 GN=ADPG1 PE=2 SV=1) HSP 1 Score: 253.062 bits (645), Expect = 5.917e-79 Identity = 145/356 (40.73%), Postives = 204/356 (57.30%), Query Frame = 1 Query: 76 GPCRSKIILTISGTIVAPQDPAVWLGLDQRKWLYFHGVNHLTVDGG--GSVNGMGEEWWARSCKINSTNVLLPGKLKLIFSSSLINCVTKVASKCPFAAMSSCSNAEYETTLTLQALTFHRCKDLKVRNLMLINSQRMHLSFTNCMRVVASHLKVLAPAFSPNTDGIHISASKGVQVRDSVIRTGDDCISIVRNSSRVWIRNIYCGPGHGISIGSLGKLKTWESVQNVIVEGAYLYNTDNGLRIKTWQGGSGLASKITFQNILMENVSNPIIIDQYYCDSQHPCENQTSAVRVENISFIDVQGTSASDEAIKFACSDISPCEDLYLENIFLVSCFGGNTNSFCWQAHGSARGFLYP 1137 GPC+S I GT+ A + + D+ WL VN+L++DGG G +NG G+ WW SCKI+ +K +K P ALT + K+L V+NL + N+Q++ +S C +V S++++ AP SPNTDGIHI+ ++ ++V +S I TGDDCISI + + I ++ CGPGHGISIGSLG + V + V+GA +DNG+RIKT+QGGSG A I FQNI MENV NPIIIDQ YCD + CE+Q SAV+V+N+ + ++ GTSA+D AI CS+ PC+ + LEN+ + G T S C A+ +G + P Sbjct: 120 GPCKSLRNFQILGTLSASTKRSDYK--DKNHWLILEDVNNLSIDGGSTGIINGNGKTWWQNSCKIDK---------------------SKPCTKAP------------------TALTLYNLKNLNVKNLRVKNAQQIQISIEKCNKVEVSNVEITAPGDSPNTDGIHITNTQNIRVSNSDIGTGDDCISIEDGTQNLQIFDLTCGPGHGISIGSLGDDNSKAYVSGINVDGAKFSESDNGVRIKTYQGGSGTAKNIKFQNIRMENVKNPIIIDQDYCD-KDKCEDQESAVQVKNVVYKNISGTSATDVAITLNCSEKYPCQGIVLENVKI----KGGTAS-CKNANVKNQGTVSP 428
BLAST of LR48_mrnaVigan05g218600 vs. DB:Swiss
Match: PGLR2_CHAOB (Polygalacturonase OS=Chamaecyparis obtusa OX=13415 PE=1 SV=1) HSP 1 Score: 244.973 bits (624), Expect = 8.713e-75 Identity = 140/357 (39.22%), Postives = 190/357 (53.22%), Query Frame = 1 Query: 76 GPCRSKIILTISGTIVAPQDPAVWLGLDQRKWLYFHGVNHLTVDGGGSVNGMGEEWWARSCKINSTNVLLPGKLKLIFSSSLINCVTKVASKCPFAAMSSCSNAEYETTLTLQALTFHRCKDLKVRNLMLINSQRMHLSFTNCMRVVASHLKVLAPAFSPNTDGIHISASKGVQVRDSVIRTGDDCISIVRNSSRVWIRNIYCGPGHGISIGSLGKLKTWESVQNVIVEGAYLYNTDNGLRIKTWQGGSGLASKITFQNILMENVSNPIIIDQYYCDSQHPCENQTSAVRVENISFIDVQGTSASDEAIKFACSDISPCEDLYLENIFLVSCFGGNTNSFCWQAHGSARGFLYPPTC 1146 GPC+ + + GTIVA DPA W + + WL F + + G G ++G G++WWA CK+ + C++ T A+ K + V+ L L+NS HL F C V LK+ AP SPNTDGI I ASK + VI TGDDCI+I SS + I+++ CGPGHGISIGSLG+ + V +V V A +T NGLRIKTWQGGSGLAS IT++N+ M N NPI+I+Q+YC S C+NQ SAV+++ +++ ++ GTSA+ AI+ CSD PC + L N+ L G + A G G L PTC Sbjct: 110 GPCQPHLSFKVDGTIVAQPDPARWK--NSKIWLQFAQLTDFNLMGTGVIDGQGQQWWAGQCKV-------------------------------VNGRTVCNDRNRPT-----AIKIDYSKSVTVKELTLMNSPEFHLVFGECEGVKIQGLKIKAPRDSPNTDGIDIFASKRFHIEKCVIGTGDDCIAIGTGSSNITIKDLICGPGHGISIGSLGRDNSRAEVSHVHVNRAKFIDTQNGLRIKTWQGGSGLASYITYENVEMINSENPILINQFYCTSASACQNQRSAVQIQGVTYKNIHGTSATAAAIQLMCSDSVPCTGIQLSNVSLKLTSGKPASCVDKNARGFYSGRLI-PTC 427
BLAST of LR48_mrnaVigan05g218600 vs. DB:Swiss
Match: PGLR2_CRYJA (Polygalacturonase OS=Cryptomeria japonica OX=3369 PE=1 SV=1) HSP 1 Score: 242.662 bits (618), Expect = 6.793e-74 Identity = 134/348 (38.51%), Postives = 190/348 (54.60%), Query Frame = 1 Query: 76 GPCRSKIILTISGTIVAPQDPAVWLGLDQRKWLYFHGVNHLTVDGGGSVNGMGEEWWARSCK-INSTNVLLPGKLKLIFSSSLINCVTKVASKCPFAAMSSCSNAEYETTLTLQALTFHRCKDLKVRNLMLINSQRMHLSFTNCMRVVASHLKVLAPAFSPNTDGIHISASKGVQVRDSVIRTGDDCISIVRNSSRVWIRNIYCGPGHGISIGSLGKLKTWESVQNVIVEGAYLYNTDNGLRIKTWQGGSGLASKITFQNILMENVSNPIIIDQYYCDSQHPCENQTSAVRVENISFIDVQGTSASDEAIKFACSDISPCEDLYLENIFL-------VSCFGGNTNSF 1095 GPC+ + G I A Q+PA W + R WL F + T+ G G ++G G++WWA CK +N + C++ + T A+ F L ++ L L+NS HL F NC V + + AP SPNTDGI I ASK ++ + I TGDDC++I SS + I ++ CGPGHGISIGSLG+ + V V V GA +T NGLRIKTWQGGSG+AS I ++N+ M N NPI+I+Q+YC S C+NQ SAV+++++++ +++GTSA+ AI+ CSD PC+D+ L +I L SC N N + Sbjct: 110 GPCQPHFTFKVDGIIAAYQNPASWK--NNRIWLQFAKLTGFTLMGKGVIDGQGKQWWAGQCKWVNGREI--------------------------------CNDRDRPT-----AIKFDFSTGLIIQGLKLMNSPEFHLVFGNCEGVKIIGISITAPRDSPNTDGIDIFASKNFHLQKNTIGTGDDCVAIGTGSSNIVIEDLICGPGHGISIGSLGRENSRAEVSYVHVNGAKFIDTQNGLRIKTWQGGSGMASHIIYENVEMINSENPILINQFYCTSASACQNQRSAVQIQDVTYKNIRGTSATAAAIQLKCSDSMPCKDIKLSDISLKLTSGKIASCLNDNANGY 418 The following BLAST results are available for this feature:
BLAST of LR48_mrnaVigan05g218600 vs. DB:Swiss
Analysis Date: 2020-05-21 (BLAST: V. angularis Jingnong 6 genome v1.1) Total hits: 10
InterPro
Analysis Name: InterProScan: Vigna angularis Jingnong 6 genome v1.1
Date Performed: 2020-05-21
Sequences
The
following sequences are available for this feature:
mRNA sequence >LR48_mrnaVigan05g218600_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan05g218600_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan05g218600; organism=Vigna angularis; type=mRNA; length=2670bpback to top protein sequence of LR48_mrnaVigan05g218600_Va_Jingnong6_v1.1 >LR48_mrnaVigan05g218600_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan05g218600_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan05g218600_Va_Jingnong6_v1.1; organism=Vigna angularis; type=polypeptide; length=405bpback to top mRNA from alignment at Chr_5-CM003375.1:29774840..29777509+ Legend: polypeptidestart_codonexonCDSintronstop_codon Hold the cursor over a type above to highlight its positions in the sequence below.>LR48_mrnaVigan05g218600_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan05g218600_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan05g218600; organism=Vigna angularis; type=mRNA; length=2670bp; location=Sequence derived from: Chr_5-CM003375.1:29774840..29777509+ (Vigna angularisback to top Coding sequence (CDS) from alignment at Chr_5-CM003375.1:29774840..29777509+ >LR48_mrnaVigan05g218600_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan05g218600_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan05g218600; organism=Vigna angularis; type=CDS; length=1218bp; location=Sequence derived from: Chr_5-CM003375.1:29774840..29777509+ (Vigna angularisback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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