LR48_mrnaVigan08g164200

Transcript Overview
NameLR48_mrnaVigan08g164200
Unique NameLR48_mrnaVigan08g164200_Va_Jingnong6_v1.1
TypemRNA
OrganismVigna angularis (Adzuki bean, red mung bean, azuki)
Sequence length1817
Producthypothetical protein
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr_8-CM003378.1supercontigChr_8-CM003378.1:26651161..26652977 -Vigna angularis Jingnong 6 genome v1.1n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Vigna angularis Jingnong 6 genome v1.12020-05-19
InterProScan: Vigna angularis Jingnong 6 genome v1.12020-05-21
BLAST: V. angularis Jingnong 6 genome v1.12020-05-21
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
ascaR110Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ascaR126Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
asasR089Vigna angularis Jingnong 6 genome v1.1Vigna angularis
anasL0089Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anasL0301Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anasL0816Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anasL1056Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anasL1143Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anasL1201Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ascaiR171Cicer arietinum ICC 4958 genome v2Cicer arietinum
ascaiR180Cicer arietinum ICC 4958 genome v2Cicer arietinum
asccR0197Cajanus cajan Asha genome v1.0Cajanus cajan
asccR0245Cajanus cajan Asha genome v1.0Cajanus cajan
ascrR134Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
ascrR171Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
aspsR119Pisum sativum Cameor genome v1aPisum sativum
aspsR157Pisum sativum Cameor genome v1aPisum sativum
aspsR167Pisum sativum Cameor genome v1aPisum sativum
aspvR130Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
aspvR158Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
asvuR093Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
asvuR119Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
astifR117Vicia faba cv. Tiffany genome v1.0Vicia faba
astifR163Vicia faba cv. Tiffany genome v1.0Vicia faba
asvfhR118Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
asvfhR165Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
asvrvR101Vigna radiata cv. VC1973A genome v6.0Vigna radiata
asvssR138Vicia sativa cv. Studenica genome v1.0Vicia sativa
asvssR139Vicia sativa cv. Studenica genome v1.0Vicia sativa
asvssR147Vicia sativa cv. Studenica genome v1.0Vicia sativa
asvuaR088Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
asvuaR113Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
ascanR104Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
ascanR112Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum

Orthologs
Gene/TranscriptAssemblySpecies
jg8898.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
rna-TanjilR_03354Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
rna-XM_004507284.3Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
jg10050.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
evm.model.Chr11.1558.1.62113172Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
Ca_00320.1Cicer arietinum ICC 4958 genome v2Cicer arietinum
rna-TanjilR_30026Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
rna-TanjilR_05949Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Cr_01068.1Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
Ca_02689Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
Vfaba.Hedin2.R1.6g042360.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
Ca_13690Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
rna-TanjilR_23499Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Vfaba.Tiffany.R1.6g033520.1Vicia faba cv. Tiffany genome v1.0Vicia faba
Ca_18703.1Cicer arietinum ICC 4958 genome v2Cicer arietinum
rna-XM_004486853.3Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
Vigun05g268800.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
rna-KK1_012261Cajanus cajan Asha genome v1.0Cajanus cajan
Cr_15928.2Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
Vfaba.Tiffany.R1.1g018680.1Vicia faba cv. Tiffany genome v1.0Vicia faba
Vigun11g166600.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
rna-XM_014638881.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
evm.model.Chr05.2522Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
Phvul.011G053700.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
rna-KK1_013842Cajanus cajan Asha genome v1.0Cajanus cajan
Psat5g289520.1Pisum sativum Cameor genome v1aPisum sativum
Phvul.005G153500.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
Vfaba.Hedin2.R1.1g027920.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
LR48_mrnaVigan05g204600Vigna angularis Jingnong 6 genome v1.1Vigna angularis
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
gene-LR48_Vigan08g164200gene-LR48_Vigan08g164200_Va_Jingnong6_v1.1Vigna angularisgene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
LR48_mrnaVigan08g164200LR48_mrnaVigan08g164200_Va_Jingnong6_v1.1-proteinVigna angularispolypeptide
LR48_mrnaVigan08g164200_Va_Jingnong6_v1.1LR48_mrnaVigan08g164200_Va_Jingnong6_v1.1Vigna angularispolypeptide


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
LR48_mrnaVigan08g164200_Va_Jingnong6_v1.1-start_codon-Chr_8-CM003378.1_Va_Jingnong6_v1.1-1589992784:26652975..26652977LR48_mrnaVigan08g164200_Va_Jingnong6_v1.1-start_codon-Chr_8-CM003378.1_Va_Jingnong6_v1.1-1589992784:26652975..26652977Vigna angularisstart_codon


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
LR48_mrnaVigan08g164200_Va_Jingnong6_v1.1-exon-Chr_8-CM003378.1_Va_Jingnong6_v1.1-1589992784:26652795..26652977LR48_mrnaVigan08g164200_Va_Jingnong6_v1.1-exon-Chr_8-CM003378.1_Va_Jingnong6_v1.1-1589992784:26652795..26652977Vigna angularisexon
LR48_mrnaVigan08g164200_Va_Jingnong6_v1.1-exon-Chr_8-CM003378.1_Va_Jingnong6_v1.1-1589992784:26651887..26652186LR48_mrnaVigan08g164200_Va_Jingnong6_v1.1-exon-Chr_8-CM003378.1_Va_Jingnong6_v1.1-1589992784:26651887..26652186Vigna angularisexon
LR48_mrnaVigan08g164200_Va_Jingnong6_v1.1-exon-Chr_8-CM003378.1_Va_Jingnong6_v1.1-1589992784:26651161..26651400LR48_mrnaVigan08g164200_Va_Jingnong6_v1.1-exon-Chr_8-CM003378.1_Va_Jingnong6_v1.1-1589992784:26651161..26651400Vigna angularisexon


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
LR48_mrnaVigan08g164200_Va_Jingnong6_v1.1-intron-Chr_8-CM003378.1_Va_Jingnong6_v1.1-1589992784:26652187..26652794LR48_mrnaVigan08g164200_Va_Jingnong6_v1.1-intron-Chr_8-CM003378.1_Va_Jingnong6_v1.1-1589992784:26652187..26652794Vigna angularisintron
LR48_mrnaVigan08g164200_Va_Jingnong6_v1.1-intron-Chr_8-CM003378.1_Va_Jingnong6_v1.1-1589992784:26651401..26651886LR48_mrnaVigan08g164200_Va_Jingnong6_v1.1-intron-Chr_8-CM003378.1_Va_Jingnong6_v1.1-1589992784:26651401..26651886Vigna angularisintron


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS7008CDS7008_Va_Jingnong6_v1.1Vigna angularisCDS


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
LR48_mrnaVigan08g164200_Va_Jingnong6_v1.1-stop_codon-Chr_8-CM003378.1_Va_Jingnong6_v1.1-1589992784:26651161..26651163LR48_mrnaVigan08g164200_Va_Jingnong6_v1.1-stop_codon-Chr_8-CM003378.1_Va_Jingnong6_v1.1-1589992784:26651161..26651163Vigna angularisstop_codon


Homology
[Close]
BLAST of LR48_mrnaVigan08g164200 vs. DB:Swiss
Match: BBX24_ARATH (B-box zinc finger protein 24 OS=Arabidopsis thaliana OX=3702 GN=BBX24 PE=1 SV=1)

HSP 1 Score: 291.582 bits (745), Expect = 6.259e-99
Identity = 154/249 (61.85%), Postives = 174/249 (69.88%), Query Frame = 1 
Query:    1 MKIQCDVCEKAPATVICCADEAVLCAKCDVEVHAANKLASKHQRLLLQCLSNKLPRCDICQDKAAFIFCVEDRALLCKDCDEPIHVAGSLSANHQRFLATGIRVALGSN-CTKGNEKGQMEPSNPNAQEXXXXXXXXXXXXFTSS-------WAVDDLLELTDFESPDKGQKQSLEFGELEWLADAGLFGEQFPQEPLAAAEVPQLPVTHTSNVASQKASKSFMSYKKPRIEV-LDEDDEEHFTVPDLG 720
            MKIQCDVCEKAPATVICCADEA LC +CD+E+HAANKLASKHQRL L  LS K PRCDICQ+KAAFIFCVEDRALLC+DCDE IHVA S SANHQRFLATGI+VAL S  C+K  EK Q EPSN N Q+                       WAVDD    +D ES DK  +  L  GEL+W +D G FG+Q   + L AAEVP+L V+H  +V S K  KS +S+KKPR E   D+DDEEHF VPDLG
Sbjct:    1 MKIQCDVCEKAPATVICCADEAALCPQCDIEIHAANKLASKHQRLHLNSLSTKFPRCDICQEKAAFIFCVEDRALLCRDCDESIHVANSRSANHQRFLATGIKVALTSTICSKEIEKNQPEPSN-NQQKANQIPAKSTSQQQQQPSSATPLPWAVDDFFHFSDIESTDKKGQLDLGAGELDWFSDMGFFGDQINDKALPAAEVPELSVSHLGHVHSYKPMKSNVSHKKPRFETRYDDDDEEHFIVPDLG 248
[Close]
BLAST of LR48_mrnaVigan08g164200 vs. DB:Swiss
Match: BBX25_ARATH (B-box zinc finger protein 25 OS=Arabidopsis thaliana OX=3702 GN=BBX25 PE=1 SV=2)

HSP 1 Score: 265.003 bits (676), Expect = 1.198e-88
Identity = 144/242 (59.50%), Postives = 174/242 (71.90%), Query Frame = 1 
Query:    1 MKIQCDVCEKAPATVICCADEAVLCAKCDVEVHAANKLASKHQRLLLQCLSNKLPRCDICQDKAAFIFCVEDRALLCKDCDEPIHVAGSLSANHQRFLATGIRVALGS-NCTKGNEKGQMEPSNPNAQEXXXXXXXXXXXXFTSSWAVDDLLELTDFESPDKGQKQSLEFGELEWLADAGLFGEQFPQEPLAAAEVPQLPVTHTSNVAS-QKASKSFMSYKKPRIEVLDEDDEEHFTVPDLG 720
            MKIQCDVCEKAPAT+ICCADEA LCAKCDVEVHAANKLASKHQRL L  LS K P CDIC +KAAFIFCVEDRALLC+DCDE  H   + SANHQRFLATGIRVAL S +C +  EK   +PSN   Q+   K P+QQ  + +  WA D+    +D +  +K +K+ L+ GEL+WLA+ GLFG+Q  QE L  AEVP+L  +H ++  S  +  KS +  KK R+E   +D+EEHF VPDLG
Sbjct:    1 MKIQCDVCEKAPATLICCADEAALCAKCDVEVHAANKLASKHQRLFLDSLSTKFPPCDICLEKAAFIFCVEDRALLCRDCDEATHAPNTRSANHQRFLATGIRVALSSTSCNQEVEKNHFDPSN---QQSLSKPPTQQPAAPSPLWATDEFFSYSDLDCSNK-EKEQLDLGELDWLAEMGLFGDQPDQEALPVAEVPELSFSHLAHAHSYNRPMKSNVPNKKQRLEYRYDDEEEHFLVPDLG 238
[Close]
BLAST of LR48_mrnaVigan08g164200 vs. DB:Swiss
Match: BBX22_ARATH (B-box zinc finger protein 22 OS=Arabidopsis thaliana OX=3702 GN=BBX22 PE=1 SV=2)

HSP 1 Score: 141.739 bits (356), Expect = 1.194e-39
Identity = 64/108 (59.26%), Postives = 80/108 (74.07%), Query Frame = 1 
Query:    1 MKIQCDVCEKAPATVICCADEAVLCAKCDVEVHAANKLASKHQRLLLQCLSNKLPRCDICQDKAAFIFCVEDRALLCKDCDEPIHVAGSLSANHQRFLATGIRVALGS 324
            MKIQC+VCE A ATV+CCADEA LC  CD ++HAANKLA KHQR+ L   ++ +P+CDICQ+ + F FC++DRALLC+ CD  IH      + HQRFL TGI+V L S
Sbjct:    1 MKIQCNVCEAAEATVLCCADEAALCWACDEKIHAANKLAGKHQRVPLSASASSIPKCDICQEASGFFFCLQDRALLCRKCDVAIHTVNPHVSAHQRFLLTGIKVGLES 108
[Close]
BLAST of LR48_mrnaVigan08g164200 vs. DB:Swiss
Match: BBX23_ARATH (B-box zinc finger protein 23 OS=Arabidopsis thaliana OX=3702 GN=BBX23 PE=1 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 3.891e-35
Identity = 60/111 (54.05%), Postives = 78/111 (70.27%), Query Frame = 1 
Query:    1 MKIQCDVCEKAPATVICCADEAVLCAKCDVEVHAANKLASKHQRLLLQ------CLSNKLPRCDICQDKAAFIFCVEDRALLCKDCDEPIHVAGSLSANHQRFLATGIRVA 315
            MKIQC+VCEKA A V+CC+DEAVLC  CD++VH ANKL  +H R+ LQ        ++  P CDICQ++  + FC+EDRA+LC DCDE IH   S    HQRFL +G++V+
Sbjct:    1 MKIQCEVCEKAEAEVLCCSDEAVLCKPCDIKVHEANKLFQRHHRVALQKDAASATTASGAPLCDICQERKGYFFCLEDRAMLCNDCDEAIHTCNS----HQRFLLSGVQVS 107
[Close]
BLAST of LR48_mrnaVigan08g164200 vs. DB:Swiss
Match: BBX21_ARATH (B-box zinc finger protein 21 OS=Arabidopsis thaliana OX=3702 GN=BBX21 PE=1 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 6.908e-35
Identity = 65/115 (56.52%), Postives = 78/115 (67.83%), Query Frame = 1 
Query:    1 MKIQCDVCEKAPATVICCADEAVLCAKCDVEVHAANKLASKHQR--LLLQCLSN-KLPRCDICQDKAAFIFCVEDRALLCKDCDEPIHVAGSLSANHQRFLATGIRVALGSNCTK 336
            MKI+CDVC+K  A+V C ADEA LC  CD +VH ANKLASKH R  LL    SN   P CDICQDK A +FC +DRA+LCKDCD  IH A   +  H RFL TG++++  S+  K
Sbjct:    1 MKIRCDVCDKEEASVFCTADEASLCGGCDHQVHHANKLASKHLRFSLLYPSSSNTSSPLCDICQDKKALLFCQQDRAILCKDCDSSIHAANEHTKKHDRFLLTGVKLSATSSVYK 115
[Close]
BLAST of LR48_mrnaVigan08g164200 vs. DB:Swiss
Match: BBX20_ARATH (B-box zinc finger protein 20 OS=Arabidopsis thaliana OX=3702 GN=BBX20 PE=1 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.110e-31
Identity = 57/106 (53.77%), Postives = 71/106 (66.98%), Query Frame = 1 
Query:    1 MKIQCDVCEKAPATVICCADEAVLCAKCDVEVHAANKLASKHQRLLLQCLSNK-LPRCDICQDKAAFIFCVEDRALLCKDCDEPIHVAGSLSANHQRFLATGIRVA 315
            MKI C VC+K  A+V CCADEA LC  CD  VH ANKLA KH R  L   + K  P CDIC ++ A +FC EDRA+LC++CD PIH A   +  H RFL TG++++
Sbjct:    1 MKIWCAVCDKEEASVFCCADEAALCNGCDRHVHFANKLAGKHLRFSLTSPTFKDAPLCDICGERRALLFCQEDRAILCRECDIPIHQANEHTKKHNRFLLTGVKIS 106
[Close]
BLAST of LR48_mrnaVigan08g164200 vs. DB:Swiss
Match: BBX18_ARATH (B-box zinc finger protein 18 OS=Arabidopsis thaliana OX=3702 GN=BBX18 PE=1 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 9.355e-23
Identity = 59/137 (43.07%), Postives = 74/137 (54.01%), Query Frame = 1 
Query:    1 MKIQCDVCEKAPATVICCADEAVLCAKCDVEVHAANKLASKHQRLLLQCLSNKLPRCDICQDKAAFIFCVEDRALLCKDCDEPIHVAGSLSANHQRFLATGIRV-----------ALGSNCTKGNEKGQMEPSNPNA 378
            M+I CD CE A A V C ADEA LC  CD +VH  NKLAS+H R+ L   SN  P CDIC++  AF +C  D + LC  CD  +HV G  +  H+RFL    R+            LG  C K +  G+ + SN N 
Sbjct:    1 MRILCDACESAAAIVFCAADEAALCCSCDEKVHKCNKLASRHLRVGLADPSNA-PSCDICENAPAFFYCEIDGSSLCLQCDMVVHVGGKRT--HRRFLLLRQRIEFPGDKPNHADQLGLRCQKAS-SGRGQESNGNG 133
[Close]
BLAST of LR48_mrnaVigan08g164200 vs. DB:Swiss
Match: BBX19_ARATH (B-box zinc finger protein 19 OS=Arabidopsis thaliana OX=3702 GN=BBX19 PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 2.381e-22
Identity = 56/132 (42.42%), Postives = 72/132 (54.55%), Query Frame = 1 
Query:    1 MKIQCDVCEKAPATVICCADEAVLCAKCDVEVHAANKLASKHQRLLLQCLSNKLPRCDICQDKAAFIFCVEDRALLCKDCDEPIHVAGSLSANHQRFLATGIRVALGS-----NCTKGNEKGQMEPSNPNAQ 381
            M+I CD CE A A + C ADEA LC  CD +VH  NKLAS+H R+ L   SN  P CDIC++  AF +C  D + LC  CD  +HV G  +  H RFL    R+         N T+ N + Q   +N N +
Sbjct:    1 MRILCDACENAAAIIFCAADEAALCRPCDEKVHMCNKLASRHVRVGLAEPSNA-PCCDICENAPAFFYCEIDGSSLCLQCDMVVHVGGKRT--HGRFLLLRQRIEFPGDKPKENNTRDNLQNQRVSTNGNGE 129
[Close]
BLAST of LR48_mrnaVigan08g164200 vs. DB:Swiss
Match: COL3_ARATH (Zinc finger protein CONSTANS-LIKE 3 OS=Arabidopsis thaliana OX=3702 GN=COL3 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.099e-17
Identity = 43/103 (41.75%), Postives = 56/103 (54.37%), Query Frame = 1 
Query:   13 CDVCEKAPATVICCADEAVLCAKCDVEVHAANKLASKHQRLLLQCLSNKLPRCDICQDKAAFIFCVEDRALLCKDCDEPIHVAGSLSANHQRFLATGIRVALG 321
            CD C+   AT+ C AD A LC  CD ++H ANKLAS+H+R+ L         C++C+   A + C  D A LC  CD  IH A  LS  H+R   T    A+G
Sbjct:    8 CDSCKSTAATLFCRADAAFLCGDCDGKIHTANKLASRHERVWL---------CEVCEQAPAHVTCKADAAALCVTCDRDIHSANPLSRRHERVPITPFYDAVG 101
[Close]
BLAST of LR48_mrnaVigan08g164200 vs. DB:Swiss
Match: COL1_ARATH (Zinc finger protein CONSTANS-LIKE 1 OS=Arabidopsis thaliana OX=3702 GN=COL1 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.274e-17
Identity = 56/173 (32.37%), Postives = 77/173 (44.51%), Query Frame = 1 
Query:   13 CDVCEKAPATVICCADEAVLCAKCDVEVHAANKLASKHQRLLLQCLSNKLPRCDICQDKAAFIFCVEDRALLCKDCDEPIHVAGSLSANHQRFLATGIRVALGSNCTKGNEKGQMEPSNPNAQEXXXXXXXXXXXXFTSSWAV----------------DDLLELTDFESPDK 483
            CD C  A  TV C AD A LC+ CD +VHAAN+LAS+H+R+ +         C  C+   A  FC  D A LC  CD  IH A  L+  HQR     I      + T  N   +   ++P  + V  +    +  +  +SW +                D+ L L D+ S DK
Sbjct:   12 CDTCRSAACTVYCRADSAYLCSSCDAQVHAANRLASRHERVRV---------CQSCERAPAAFFCKADAASLCTTCDSEIHSANPLARRHQRVPILPIS-EYSYSSTATNHSCETTVTDPENRLVLGQEEEDEDEAEAASWLLPNSGKNSGNNNGFSIGDEFLNLVDYSSSDK 174
The following BLAST results are available for this feature:
BLAST of LR48_mrnaVigan08g164200 vs. DB:Swiss
Analysis Date: 2020-05-21 (BLAST: V. angularis Jingnong 6 genome v1.1)
Total hits: 10
Match NameE-valueIdentityDescription
BBX24_ARATH6.259e-9961.85B-box zinc finger protein 24 OS=Arabidopsis thalia... [more]
BBX25_ARATH1.198e-8859.50B-box zinc finger protein 25 OS=Arabidopsis thalia... [more]
BBX22_ARATH1.194e-3959.26B-box zinc finger protein 22 OS=Arabidopsis thalia... [more]
BBX23_ARATH3.891e-3554.05B-box zinc finger protein 23 OS=Arabidopsis thalia... [more]
BBX21_ARATH6.908e-3556.52B-box zinc finger protein 21 OS=Arabidopsis thalia... [more]
BBX20_ARATH2.110e-3153.77B-box zinc finger protein 20 OS=Arabidopsis thalia... [more]
BBX18_ARATH9.355e-2343.07B-box zinc finger protein 18 OS=Arabidopsis thalia... [more]
BBX19_ARATH2.381e-2242.42B-box zinc finger protein 19 OS=Arabidopsis thalia... [more]
COL3_ARATH1.099e-1741.75Zinc finger protein CONSTANS-LIKE 3 OS=Arabidopsis... [more]
COL1_ARATH1.274e-1732.37Zinc finger protein CONSTANS-LIKE 1 OS=Arabidopsis... [more]
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InterPro
Analysis Name: InterProScan: Vigna angularis Jingnong 6 genome v1.1
Date Performed: 2020-05-21
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000315B-box-type zinc fingerSMARTSM00336bboxneu5coord: 4..47
e-value: 1.8E-9
score: 47.4
coord: 52..99
e-value: 1.0E-15
score: 68.2
IPR000315B-box-type zinc fingerPFAMPF00643zf-B_boxcoord: 53..95
e-value: 1.5E-7
score: 31.3
coord: 4..44
e-value: 1.9E-5
score: 24.6
IPR000315B-box-type zinc fingerPROSITEPS50119ZF_BBOXcoord: 1..47
score: 9.286
IPR000315B-box-type zinc fingerPROSITEPS50119ZF_BBOXcoord: 52..99
score: 9.485
IPR000315B-box-type zinc fingerCDDcd00021BBOXcoord: 55..98
e-value: 3.66858E-7
score: 43.4299
IPR000315B-box-type zinc fingerCDDcd00021BBOXcoord: 3..47
e-value: 4.21863E-7
score: 43.4299
NoneNo IPR availableGENE3D3.30.40.200coord: 1..93
e-value: 1.3E-6
score: 30.8

Sequences
The following sequences are available for this feature:

mRNA sequence

>LR48_mrnaVigan08g164200_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan08g164200_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan08g164200; organism=Vigna angularis; type=mRNA; length=1817bp
ATGAAAATTCAGTGTGACGTGTGTGAGAAAGCCCCGGCAACAGTGATTTG
TTGCGCAGATGAAGCAGTTTTGTGTGCCAAATGTGACGTTGAAGTTCATG
CTGCAAACAAGCTTGCAAGCAAGCATCAGAGGCTTCTTCTTCAATGCTTA
TCAAACAAGCTTCCCAGATGCGACATATGTCAGGTATTTCTTCTCTTTTT
CTACTTTTGTGATATCATCAAATACTCTCACAAATCGTTATACTTGGAGG
GATGGATTTGTTTCATTTTGCCCAAAATTTTTGTGTGTGTTTGTTTCATA
TGAGAAGCAACAGTTTAAACATCAAACACAGATATGCATGTAACAAAGAA
GATCAGATCTAAGTTCTAGTAAATTGAATCTGTTTGGCATGCATGGTTAT
GCTTTTACTTGTGTCAATTACTGTCATGGCACATGAGAATTTATTCCGGC
AGAGGGTGTTTCAGAAAACTTCAAAGCATTTATGAGCAAGGATTGTAGAA
TCTGATTCCAAAAACTTTATATTTAAACTTGTATTGTCTTAATGCTATGG
TATTTCTTTATGAATGTTGAAGCCAAAAGTTTGTGGTGATTTAAAGCACT
AAGTTTACGAAAAGAGCTAACTGGTCAGTATAATTGTCTGATATCTGTGA
TGTATCGTTCTACCAAAACTTCATTCATCTTTGACTATTTATGTTAAAGA
ATCATCCTTATGTAATGTTATGAGTAGGATTTGAAACCGGTGTTGAACAT
GGATAACTTTATTAACTCTGTGATGTGTGATATAATTGTAGGATAAGGCA
GCTTTCATATTCTGTGTTGAGGACAGAGCACTCTTGTGTAAAGACTGTGA
TGAGCCAATTCATGTAGCTGGTAGCCTTTCTGCGAACCACCAGCGGTTTC
TTGCTACTGGTATTCGGGTGGCTTTGGGTTCTAATTGCACCAAAGGCAAT
GAAAAGGGTCAGATGGAACCATCTAATCCAAATGCACAAGAAGTTCCTGT
GAAAGTTCCTTCTCAGCAAGTGCCTAGCTTCACATCCTCTTGGGCAGTTG
ATGACTTGTTGGAATTAACAGACTTTGAGTCACCAGACAAAGTAAGGCAG
CTTTGTTTCACTACTGTAGTTACATGTATCAGCTAAGAAATTAGAGTGAT
TTCGATAGAAGAATCTAGTATGATTAAGAGCTACCATTTTTTTCTGTTTT
GAAATAGCATACAATCTTGCCTCACCTTGCATATGCACACAAATTTTTGT
TTGTTGGTGTGAGGGATGAATTGAGAGATTAAGGTTTATGAGGTTAGAGT
TTTATTCTCACATTGCAGTATATGAATGTTTCCTTTGCACATGATTGAGC
ACTGAATTCTATATGTAAAAAAGACTCATCGCATTGAAGGTAGGTTTGCT
TCTATGTAACACATTCTGGCTCTTGATTCTGGTTTATATGACTTTCTTTA
AACAAATGATGTATCATATTTGCACCATAAACTGTGTGGAGAATTATGGT
AAGGAGTTGTGGTCACTTAATTATGCTGTTGCCCTTTTGTGTTGTTATAA
TGTTTGGAACTGATTCATCTTTTTCAGGGTCAGAAGCAGTCTCTGGAGTT
TGGAGAGCTTGAATGGCTAGCAGATGCAGGTCTTTTTGGTGAACAGTTCC
CTCAGGAACCTTTAGCAGCTGCTGAAGTTCCCCAGCTTCCAGTGACACAT
ACCAGCAATGTTGCCTCACAGAAAGCTTCTAAGTCCTTCATGTCTTACAA
AAAGCCTAGGATTGAAGTTCTAGATGAAGATGATGAGGAACATTTCACTG
TTCCTGATTTAGGCTAG
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protein sequence of LR48_mrnaVigan08g164200_Va_Jingnong6_v1.1

>LR48_mrnaVigan08g164200_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan08g164200_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan08g164200_Va_Jingnong6_v1.1; organism=Vigna angularis; type=polypeptide; length=240bp
MKIQCDVCEKAPATVICCADEAVLCAKCDVEVHAANKLASKHQRLLLQCL
SNKLPRCDICQDKAAFIFCVEDRALLCKDCDEPIHVAGSLSANHQRFLAT
GIRVALGSNCTKGNEKGQMEPSNPNAQEVPVKVPSQQVPSFTSSWAVDDL
LELTDFESPDKGQKQSLEFGELEWLADAGLFGEQFPQEPLAAAEVPQLPV
THTSNVASQKASKSFMSYKKPRIEVLDEDDEEHFTVPDLG
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mRNA from alignment at Chr_8-CM003378.1:26651161..26652977-

Legend: polypeptidestart_codonexonCDSintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>LR48_mrnaVigan08g164200_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan08g164200_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan08g164200; organism=Vigna angularis; type=mRNA; length=1817bp; location=Sequence derived from: Chr_8-CM003378.1:26651161..26652977- (Vigna angularis
ATGAAAATTCAGTGTGACGTGTGTGAGAAAGCCCCGGCAACAGTGATTTG
TTGCGCAGATGAAGCAGTTTTGTGTGCCAAATGTGACGTTGAAGTTCATG
CTGCAAACAAGCTTGCAAGCAAGCATCAGAGGCTTCTTCTTCAATGCTTA
TCAAACAAGCTTCCCAGATGCGACATATGTCAGGTATTTCTTCTCTTTTT
CTACTTTTGTGATATCATCAAATACTCTCACAAATCGTTATACTTGGAGG
GATGGATTTGTTTCATTTTGCCCAAAATTTTTGTGTGTGTTTGTTTCATA
TGAGAAGCAACAGTTTAAACATCAAACACAGATATGCATGTAACAAAGAA
GATCAGATCTAAGTTCTAGTAAATTGAATCTGTTTGGCATGCATGGTTAT
GCTTTTACTTGTGTCAATTACTGTCATGGCACATGAGAATTTATTCCGGC
AGAGGGTGTTTCAGAAAACTTCAAAGCATTTATGAGCAAGGATTGTAGAA
TCTGATTCCAAAAACTTTATATTTAAACTTGTATTGTCTTAATGCTATGG
TATTTCTTTATGAATGTTGAAGCCAAAAGTTTGTGGTGATTTAAAGCACT
AAGTTTACGAAAAGAGCTAACTGGTCAGTATAATTGTCTGATATCTGTGA
TGTATCGTTCTACCAAAACTTCATTCATCTTTGACTATTTATGTTAAAGA
ATCATCCTTATGTAATGTTATGAGTAGGATTTGAAACCGGTGTTGAACAT
GGATAACTTTATTAACTCTGTGATGTGTGATATAATTGTAGGATAAGGCA
GCTTTCATATTCTGTGTTGAGGACAGAGCACTCTTGTGTAAAGACTGTGA
TGAGCCAATTCATGTAGCTGGTAGCCTTTCTGCGAACCACCAGCGGTTTC
TTGCTACTGGTATTCGGGTGGCTTTGGGTTCTAATTGCACCAAAGGCAAT
GAAAAGGGTCAGATGGAACCATCTAATCCAAATGCACAAGAAGTTCCTGT
GAAAGTTCCTTCTCAGCAAGTGCCTAGCTTCACATCCTCTTGGGCAGTTG
ATGACTTGTTGGAATTAACAGACTTTGAGTCACCAGACAAAGTAAGGCAG
CTTTGTTTCACTACTGTAGTTACATGTATCAGCTAAGAAATTAGAGTGAT
TTCGATAGAAGAATCTAGTATGATTAAGAGCTACCATTTTTTTCTGTTTT
GAAATAGCATACAATCTTGCCTCACCTTGCATATGCACACAAATTTTTGT
TTGTTGGTGTGAGGGATGAATTGAGAGATTAAGGTTTATGAGGTTAGAGT
TTTATTCTCACATTGCAGTATATGAATGTTTCCTTTGCACATGATTGAGC
ACTGAATTCTATATGTAAAAAAGACTCATCGCATTGAAGGTAGGTTTGCT
TCTATGTAACACATTCTGGCTCTTGATTCTGGTTTATATGACTTTCTTTA
AACAAATGATGTATCATATTTGCACCATAAACTGTGTGGAGAATTATGGT
AAGGAGTTGTGGTCACTTAATTATGCTGTTGCCCTTTTGTGTTGTTATAA
TGTTTGGAACTGATTCATCTTTTTCAGGGTCAGAAGCAGTCTCTGGAGTT
TGGAGAGCTTGAATGGCTAGCAGATGCAGGTCTTTTTGGTGAACAGTTCC
CTCAGGAACCTTTAGCAGCTGCTGAAGTTCCCCAGCTTCCAGTGACACAT
ACCAGCAATGTTGCCTCACAGAAAGCTTCTAAGTCCTTCATGTCTTACAA
AAAGCCTAGGATTGAAGTTCTAGATGAAGATGATGAGGAACATTTCACTG
TTCCTGATTTAGGCTAG
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Coding sequence (CDS) from alignment at Chr_8-CM003378.1:26651161..26652977-

>LR48_mrnaVigan08g164200_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan08g164200_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan08g164200; organism=Vigna angularis; type=CDS; length=723bp; location=Sequence derived from: Chr_8-CM003378.1:26651161..26652977- (Vigna angularis
ATGAAAATTCAGTGTGACGTGTGTGAGAAAGCCCCGGCAACAGTGATTTG
TTGCGCAGATGAAGCAGTTTTGTGTGCCAAATGTGACGTTGAAGTTCATG
CTGCAAACAAGCTTGCAAGCAAGCATCAGAGGCTTCTTCTTCAATGCTTA
TCAAACAAGCTTCCCAGATGCGACATATGTCAGGATAAGGCAGCTTTCAT
ATTCTGTGTTGAGGACAGAGCACTCTTGTGTAAAGACTGTGATGAGCCAA
TTCATGTAGCTGGTAGCCTTTCTGCGAACCACCAGCGGTTTCTTGCTACT
GGTATTCGGGTGGCTTTGGGTTCTAATTGCACCAAAGGCAATGAAAAGGG
TCAGATGGAACCATCTAATCCAAATGCACAAGAAGTTCCTGTGAAAGTTC
CTTCTCAGCAAGTGCCTAGCTTCACATCCTCTTGGGCAGTTGATGACTTG
TTGGAATTAACAGACTTTGAGTCACCAGACAAAGGTCAGAAGCAGTCTCT
GGAGTTTGGAGAGCTTGAATGGCTAGCAGATGCAGGTCTTTTTGGTGAAC
AGTTCCCTCAGGAACCTTTAGCAGCTGCTGAAGTTCCCCAGCTTCCAGTG
ACACATACCAGCAATGTTGCCTCACAGAAAGCTTCTAAGTCCTTCATGTC
TTACAAAAAGCCTAGGATTGAAGTTCTAGATGAAGATGATGAGGAACATT
TCACTGTTCCTGATTTAGGCTAG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR000315Znf_B-box
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding