Transcript Overview
Name | LR48_mrnaVigan08g200200 |
Unique Name | LR48_mrnaVigan08g200200_Va_Jingnong6_v1.1 |
Type | mRNA |
Organism | Vigna angularis (Adzuki bean, red mung bean, azuki) |
Sequence length | 2424 |
Product | hypothetical protein |
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks
Orthologs
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
Feature Name | Unique Name | Species | Type |
LR48_mrnaVigan08g200200 | LR48_mrnaVigan08g200200_Va_Jingnong6_v1.1-protein | Vigna angularis | polypeptide |
LR48_mrnaVigan08g200200_Va_Jingnong6_v1.1 | LR48_mrnaVigan08g200200_Va_Jingnong6_v1.1 | Vigna angularis | polypeptide |
The following start_codon feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type |
LR48_mrnaVigan08g200200_Va_Jingnong6_v1.1-start_codon-Chr_8-CM003378.1_Va_Jingnong6_v1.1-1589992784:29478519..29478521 | LR48_mrnaVigan08g200200_Va_Jingnong6_v1.1-start_codon-Chr_8-CM003378.1_Va_Jingnong6_v1.1-1589992784:29478519..29478521 | Vigna angularis | start_codon |
The following exon feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type |
LR48_mrnaVigan08g200200_Va_Jingnong6_v1.1-exon-Chr_8-CM003378.1_Va_Jingnong6_v1.1-1589992784:29478333..29478521 | LR48_mrnaVigan08g200200_Va_Jingnong6_v1.1-exon-Chr_8-CM003378.1_Va_Jingnong6_v1.1-1589992784:29478333..29478521 | Vigna angularis | exon |
LR48_mrnaVigan08g200200_Va_Jingnong6_v1.1-exon-Chr_8-CM003378.1_Va_Jingnong6_v1.1-1589992784:29478114..29478164 | LR48_mrnaVigan08g200200_Va_Jingnong6_v1.1-exon-Chr_8-CM003378.1_Va_Jingnong6_v1.1-1589992784:29478114..29478164 | Vigna angularis | exon |
LR48_mrnaVigan08g200200_Va_Jingnong6_v1.1-exon-Chr_8-CM003378.1_Va_Jingnong6_v1.1-1589992784:29477424..29477557 | LR48_mrnaVigan08g200200_Va_Jingnong6_v1.1-exon-Chr_8-CM003378.1_Va_Jingnong6_v1.1-1589992784:29477424..29477557 | Vigna angularis | exon |
LR48_mrnaVigan08g200200_Va_Jingnong6_v1.1-exon-Chr_8-CM003378.1_Va_Jingnong6_v1.1-1589992784:29476690..29476790 | LR48_mrnaVigan08g200200_Va_Jingnong6_v1.1-exon-Chr_8-CM003378.1_Va_Jingnong6_v1.1-1589992784:29476690..29476790 | Vigna angularis | exon |
LR48_mrnaVigan08g200200_Va_Jingnong6_v1.1-exon-Chr_8-CM003378.1_Va_Jingnong6_v1.1-1589992784:29476098..29476267 | LR48_mrnaVigan08g200200_Va_Jingnong6_v1.1-exon-Chr_8-CM003378.1_Va_Jingnong6_v1.1-1589992784:29476098..29476267 | Vigna angularis | exon |
The following intron feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type |
LR48_mrnaVigan08g200200_Va_Jingnong6_v1.1-intron-Chr_8-CM003378.1_Va_Jingnong6_v1.1-1589992784:29478165..29478332 | LR48_mrnaVigan08g200200_Va_Jingnong6_v1.1-intron-Chr_8-CM003378.1_Va_Jingnong6_v1.1-1589992784:29478165..29478332 | Vigna angularis | intron |
LR48_mrnaVigan08g200200_Va_Jingnong6_v1.1-intron-Chr_8-CM003378.1_Va_Jingnong6_v1.1-1589992784:29477558..29478113 | LR48_mrnaVigan08g200200_Va_Jingnong6_v1.1-intron-Chr_8-CM003378.1_Va_Jingnong6_v1.1-1589992784:29477558..29478113 | Vigna angularis | intron |
LR48_mrnaVigan08g200200_Va_Jingnong6_v1.1-intron-Chr_8-CM003378.1_Va_Jingnong6_v1.1-1589992784:29476791..29477423 | LR48_mrnaVigan08g200200_Va_Jingnong6_v1.1-intron-Chr_8-CM003378.1_Va_Jingnong6_v1.1-1589992784:29476791..29477423 | Vigna angularis | intron |
LR48_mrnaVigan08g200200_Va_Jingnong6_v1.1-intron-Chr_8-CM003378.1_Va_Jingnong6_v1.1-1589992784:29476268..29476689 | LR48_mrnaVigan08g200200_Va_Jingnong6_v1.1-intron-Chr_8-CM003378.1_Va_Jingnong6_v1.1-1589992784:29476268..29476689 | Vigna angularis | intron |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type |
CDS7277 | CDS7277_Va_Jingnong6_v1.1 | Vigna angularis | CDS |
The following stop_codon feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type |
LR48_mrnaVigan08g200200_Va_Jingnong6_v1.1-stop_codon-Chr_8-CM003378.1_Va_Jingnong6_v1.1-1589992784:29476098..29476100 | LR48_mrnaVigan08g200200_Va_Jingnong6_v1.1-stop_codon-Chr_8-CM003378.1_Va_Jingnong6_v1.1-1589992784:29476098..29476100 | Vigna angularis | stop_codon |
Homology
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterProScan: Vigna angularis Jingnong 6 genome v1.1
Date Performed: 2020-05-21
IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1..23 |
Sequences
The
following sequences are available for this feature:
mRNA sequence >LR48_mrnaVigan08g200200_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan08g200200_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan08g200200; organism=Vigna angularis; type=mRNA; length=2424bp ATGGTTGTCACACGTTGCTCCTCTGCGCCGTCACACAGTGGATCCAACCC ATCTCAACAACCTCTTCTCAACGACCAAACCTTCCACACCCAAGTAACAA CCCCTCAAACTCCTTCGTTTCTTTCGCCCTTACCCAAACTCACTTCTTCT GACCAAGCCTTCTTTCTCCTCGCATTCATCGCTTCTACGGTATGATCCTT CTTTTTTTTGTTCGGCTACGTTTTTTTAGGTTATTCCAGCCCTCAATATT CTCATGAATTAATTAATACCGTAATTTGAGTTGAGTGTTTCATCAACTCG ATTTGAATTAAATTTGTTGCTCTGTGTCTGAAAATGTTTTGACTATTGTT TCTGCAGACCTCAGTGGCATTCGCTAGCTTTGTTGCTGCTGCTGTTCCCG CCCTGTTTGTAAGTTGTCTATCACGTTGCTTATATTTGTAAGTGCAGTAT GTATAAACATTTGTTATTCTGCCTGGTTGGTTGCATTTGCTTCCTTTTGG TTCTCTATAATAAATTGATAGGTTTAGATTTCACTGTTTATACTTCAAAT TTGAAAGAATTCTAGTTGAACTTAACTGTTCAAACAAAGGATTTTTTTTT TTCCTTAGGGGGAGCTTTGGATTTTAGATAGTTTTGTTTAGATAATGTAA ATTAATCTTTACGCGACTTATGTCTCTATTGATGAATGCTAATGTAAATT AATCTTTGGTTTTTTATTTGTATTCTCTGGTGGAAGATCTTCAACTTTTG TTTCATTTAATAGGAACTTAACTTGTCTTATTGGCTATGCCTAGACCACT TCTCTCTGCAACATTGAATTTCCTTCGTGTTGTTTTGTTTTTCTCATCTA TGTTTTATTTCCTAGACATATCATATGTCACCCACTAAATATTCGTGTTT GGATAATTGTTAAGCATAAACAGACTCAAACTACTCATATACCATTTTTG TACATCTTCCTTAGGCGATAAGAAATGCTGCAATATCCCTTTCAAAGCTG GCTGATACAGCTCGTGAGGAGCTCCCTAGTACCATGACTGCTATTAGGCT TTCTGGGATGGAAATAAGTGATCTAACTCTAGAACTAAGTGATCTAAGGT AACAATGTTTACTTTGCTTTGACTCCATTGTTTCTGTATTTCTTTCCATA TATTTTTTTTCTAAATGTTGGTTGTCTTTTTTATTATTAACTGTACATCG GGTGTGTTGGGATAAAATTCAGTTGAACATAATCAATGTTTTCCTCATTC TGATTGCTTCATGCAAGACTTGTAATTTTTATAATTGGTTTACTTTCTGA AGTTTAGCTGGCATGGGAGAGATCCTTCTGAATCCTTCAGTTCCATATTG GAAAATGTGGTTGGTCATTCACCCAATGTTTTGTTAAGTATGCAAGTGAA AAATGCTGGCTTACATTGTTCAATATGATCAATACAACTCAATAAATTTT TTCAGGAAAGTAAATGAATTTTGAACATTTGGCAACTGGTAATGATAAAA AGTAAACGCCCTTTTATCATGAAAGGAATTTCACGCACTATTATTGGGTT CAATTTGTGAGAACCCCCACCCCAAATAAGTACGACCCACAAAAAATTCA CCTAATAACAAAAGAGTGTTTAAAAGACTGTAAGAAATGGTAGTGTTCCT CTTATGAGGAATTGGTTTTCAAAGTCAATATTTCAACGACATGACATATC TTGATCTAATCATATGTTTTTTGGCAATCAGCCAGGAAGTAGCAGACGGA GTCAACGCGTCAGCTCAAGTTGTGCAAGCAGCAGAAGCTAAACTCCGACA ATTTAGTTCAATGGCACGACAACAAACCGAGTGTACGTATACTGTGTTTG CTGGGATTTCTTTGGTTTTTCCTTTTCCATTTTCCCCACTTAATCTTAAC TATACAACAGGGGTATCAGAGAAATAAGAAATAAGGCTAGGCAAGCACAC TTGAATTTTTCTAACTCCTATTGTGGGTTGAAACTTGTGTTTCATTTTTC AGAGGATTTCTGTAAGAGACTCAGGTGTTAGCCATTGAATTATACACTCC AACACACAAATCAATCATCAATCTTTTTCCACACTAGGAGTTTAGATTCC ATTTAACAGCTTAAAGCATCGAATTAAGTAGTCAATATTCTTTCGAGCAA GCAATTGGAGCACTTGTTGAATGGGGATACTAATACATGGGGTGATATCA GTGCAATCTTGTCTTTCTTCTTTGTTAGTCTGATTATAGTTCGGTTCAAT ACAGCCATGATCCAAGAGAGGGCGAGTTTGCCCATAATTTCTTTGCAACC TGCTGTTGCTGGAGCTGCTAGAAAGACTACTAGAGCAGTTGGCCGAGCCA CAAAGAGCTTGTTCAATATCATTTCAGGAAGGCAAGGCACAACAGAATAT GATGATGATGGAGCTTACGACTGA back to topprotein sequence of LR48_mrnaVigan08g200200_Va_Jingnong6_v1.1 >LR48_mrnaVigan08g200200_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan08g200200_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan08g200200_Va_Jingnong6_v1.1; organism=Vigna angularis; type=polypeptide; length=214bp MVVTRCSSAPSHSGSNPSQQPLLNDQTFHTQVTTPQTPSFLSPLPKLTSS DQAFFLLAFIASTTSVAFASFVAAAVPALFAIRNAAISLSKLADTAREEL PSTMTAIRLSGMEISDLTLELSDLSQEVADGVNASAQVVQAAEAKLRQFS SMARQQTESMIQERASLPIISLQPAVAGAARKTTRAVGRATKSLFNIISG RQGTTEYDDDGAYD back to topmRNA from alignment at Chr_8-CM003378.1:29476098..29478521- Legend: polypeptidestart_codonexonCDSintronstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >LR48_mrnaVigan08g200200_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan08g200200_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan08g200200; organism=Vigna angularis; type=mRNA; length=2424bp; location=Sequence derived from: Chr_8-CM003378.1:29476098..29478521- (Vigna angularis ATGGTTGTCACACGTTGCTCCTCTGCGCCGTCACACAGTGGATCCAACCC
ATCTCAACAACCTCTTCTCAACGACCAAACCTTCCACACCCAAGTAACAA
CCCCTCAAACTCCTTCGTTTCTTTCGCCCTTACCCAAACTCACTTCTTCT
GACCAAGCCTTCTTTCTCCTCGCATTCATCGCTTCTACGGTATGATCCTT
CTTTTTTTTGTTCGGCTACGTTTTTTTAGGTTATTCCAGCCCTCAATATT
CTCATGAATTAATTAATACCGTAATTTGAGTTGAGTGTTTCATCAACTCG
ATTTGAATTAAATTTGTTGCTCTGTGTCTGAAAATGTTTTGACTATTGTT
TCTGCAGACCTCAGTGGCATTCGCTAGCTTTGTTGCTGCTGCTGTTCCCG
CCCTGTTTGTAAGTTGTCTATCACGTTGCTTATATTTGTAAGTGCAGTAT
GTATAAACATTTGTTATTCTGCCTGGTTGGTTGCATTTGCTTCCTTTTGG
TTCTCTATAATAAATTGATAGGTTTAGATTTCACTGTTTATACTTCAAAT
TTGAAAGAATTCTAGTTGAACTTAACTGTTCAAACAAAGGATTTTTTTTT
TTCCTTAGGGGGAGCTTTGGATTTTAGATAGTTTTGTTTAGATAATGTAA
ATTAATCTTTACGCGACTTATGTCTCTATTGATGAATGCTAATGTAAATT
AATCTTTGGTTTTTTATTTGTATTCTCTGGTGGAAGATCTTCAACTTTTG
TTTCATTTAATAGGAACTTAACTTGTCTTATTGGCTATGCCTAGACCACT
TCTCTCTGCAACATTGAATTTCCTTCGTGTTGTTTTGTTTTTCTCATCTA
TGTTTTATTTCCTAGACATATCATATGTCACCCACTAAATATTCGTGTTT
GGATAATTGTTAAGCATAAACAGACTCAAACTACTCATATACCATTTTTG
TACATCTTCCTTAGGCGATAAGAAATGCTGCAATATCCCTTTCAAAGCTG
GCTGATACAGCTCGTGAGGAGCTCCCTAGTACCATGACTGCTATTAGGCT
TTCTGGGATGGAAATAAGTGATCTAACTCTAGAACTAAGTGATCTAAGGT
AACAATGTTTACTTTGCTTTGACTCCATTGTTTCTGTATTTCTTTCCATA
TATTTTTTTTCTAAATGTTGGTTGTCTTTTTTATTATTAACTGTACATCG
GGTGTGTTGGGATAAAATTCAGTTGAACATAATCAATGTTTTCCTCATTC
TGATTGCTTCATGCAAGACTTGTAATTTTTATAATTGGTTTACTTTCTGA
AGTTTAGCTGGCATGGGAGAGATCCTTCTGAATCCTTCAGTTCCATATTG
GAAAATGTGGTTGGTCATTCACCCAATGTTTTGTTAAGTATGCAAGTGAA
AAATGCTGGCTTACATTGTTCAATATGATCAATACAACTCAATAAATTTT
TTCAGGAAAGTAAATGAATTTTGAACATTTGGCAACTGGTAATGATAAAA
AGTAAACGCCCTTTTATCATGAAAGGAATTTCACGCACTATTATTGGGTT
CAATTTGTGAGAACCCCCACCCCAAATAAGTACGACCCACAAAAAATTCA
CCTAATAACAAAAGAGTGTTTAAAAGACTGTAAGAAATGGTAGTGTTCCT
CTTATGAGGAATTGGTTTTCAAAGTCAATATTTCAACGACATGACATATC
TTGATCTAATCATATGTTTTTTGGCAATCAGCCAGGAAGTAGCAGACGGA
GTCAACGCGTCAGCTCAAGTTGTGCAAGCAGCAGAAGCTAAACTCCGACA
ATTTAGTTCAATGGCACGACAACAAACCGAGTGTACGTATACTGTGTTTG
CTGGGATTTCTTTGGTTTTTCCTTTTCCATTTTCCCCACTTAATCTTAAC
TATACAACAGGGGTATCAGAGAAATAAGAAATAAGGCTAGGCAAGCACAC
TTGAATTTTTCTAACTCCTATTGTGGGTTGAAACTTGTGTTTCATTTTTC
AGAGGATTTCTGTAAGAGACTCAGGTGTTAGCCATTGAATTATACACTCC
AACACACAAATCAATCATCAATCTTTTTCCACACTAGGAGTTTAGATTCC
ATTTAACAGCTTAAAGCATCGAATTAAGTAGTCAATATTCTTTCGAGCAA
GCAATTGGAGCACTTGTTGAATGGGGATACTAATACATGGGGTGATATCA
GTGCAATCTTGTCTTTCTTCTTTGTTAGTCTGATTATAGTTCGGTTCAAT
ACAGCCATGATCCAAGAGAGGGCGAGTTTGCCCATAATTTCTTTGCAACC
TGCTGTTGCTGGAGCTGCTAGAAAGACTACTAGAGCAGTTGGCCGAGCCA
CAAAGAGCTTGTTCAATATCATTTCAGGAAGGCAAGGCACAACAGAATAT
GATGATGATGGAGCTTACGACTGA back to topCoding sequence (CDS) from alignment at Chr_8-CM003378.1:29476098..29478521- >LR48_mrnaVigan08g200200_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan08g200200_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan08g200200; organism=Vigna angularis; type=CDS; length=645bp; location=Sequence derived from: Chr_8-CM003378.1:29476098..29478521- (Vigna angularis ATGGTTGTCACACGTTGCTCCTCTGCGCCGTCACACAGTGGATCCAACCC ATCTCAACAACCTCTTCTCAACGACCAAACCTTCCACACCCAAGTAACAA CCCCTCAAACTCCTTCGTTTCTTTCGCCCTTACCCAAACTCACTTCTTCT GACCAAGCCTTCTTTCTCCTCGCATTCATCGCTTCTACGACCTCAGTGGC ATTCGCTAGCTTTGTTGCTGCTGCTGTTCCCGCCCTGTTTGCGATAAGAA ATGCTGCAATATCCCTTTCAAAGCTGGCTGATACAGCTCGTGAGGAGCTC CCTAGTACCATGACTGCTATTAGGCTTTCTGGGATGGAAATAAGTGATCT AACTCTAGAACTAAGTGATCTAAGCCAGGAAGTAGCAGACGGAGTCAACG CGTCAGCTCAAGTTGTGCAAGCAGCAGAAGCTAAACTCCGACAATTTAGT TCAATGGCACGACAACAAACCGAGTCCATGATCCAAGAGAGGGCGAGTTT GCCCATAATTTCTTTGCAACCTGCTGTTGCTGGAGCTGCTAGAAAGACTA CTAGAGCAGTTGGCCGAGCCACAAAGAGCTTGTTCAATATCATTTCAGGA AGGCAAGGCACAACAGAATATGATGATGATGGAGCTTACGACTGA back to top
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