LR48_mrnaVigan07g283600
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following start_codon feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
Homology
BLAST of LR48_mrnaVigan07g283600 vs. DB:Swiss
Match: SAU50_ARATH (Auxin-responsive protein SAUR50 OS=Arabidopsis thaliana OX=3702 GN=SAUR50 PE=1 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 3.718e-19 Identity = 39/101 (38.61%), Postives = 58/101 (57.43%), Query Frame = 1 Query: 10 KCSQIRHIVRLRQMLRRW-----RNKARMSANRTPSDVPAGHVAVCVGTNLTRFVVRATYLNHPVFKKLLLQAEEEYGFSNHGPLVIPCDEMLFHEVLRFI 297 K S++ L+Q+L+R +N + P DVP GH V VG N +R++V ++L HP F+ LL +AEEE+GF + L IPCDE++F + I Sbjct: 6 KTSKLTQTAMLKQILKRCSSLGKKNGGGYDEDCLPLDVPKGHFPVYVGENRSRYIVPISFLTHPEFQSLLQRAEEEFGFDHDMGLTIPCDELVFQTLTSMI 106
BLAST of LR48_mrnaVigan07g283600 vs. DB:Swiss
Match: SAU71_ARATH (Auxin-responsive protein SAUR71 OS=Arabidopsis thaliana OX=3702 GN=SAUR71 PE=2 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.585e-16 Identity = 36/80 (45.00%), Postives = 46/80 (57.50%), Query Frame = 1 Query: 49 MLRRWRNKARMSANRTPSDVPAGHVAVCVGTNLTRFVVRATYLNHPVFKKLLLQAEEEYGFSNHGPLVIPCDEMLFHEVL 288 +LR + R + S VP GHV V VG + RFVV A LNHPVF LL Q+ +EYG+ G L IPC ++F +L Sbjct: 19 LLRSESQRGRTKKEKHKSWVPEGHVPVYVGHEMERFVVNAELLNHPVFVALLKQSAQEYGYEQQGVLRIPCHVLVFERIL 98
BLAST of LR48_mrnaVigan07g283600 vs. DB:Swiss
Match: SAU10_ARATH (Protein SMALL AUXIN UP-REGULATED RNA 10 OS=Arabidopsis thaliana OX=3702 GN=SAUR10 PE=2 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 2.565e-16 Identity = 38/98 (38.78%), Postives = 57/98 (58.16%), Query Frame = 1 Query: 4 SPKCSQIRHIVRLRQMLRRWRNKARMSANRT---PSDVPAGHVAVCVGTNLTRFVVRATYLNHPVFKKLLLQAEEEYGFSNHGPLVIPCDEMLFHEVL 288 S + + I+ IV+ LR+ +N N+ P DVP GH V VG N +R++V ++L+H F+ LL AEEE+GF + L IPCDE+ F ++ Sbjct: 11 SSQAASIKQIVKRCSSLRKMKNVNGCYYNQEDDLPQDVPKGHFPVYVGPNRSRYIVPISWLHHSEFQTLLRLAEEEFGFDHDMGLTIPCDEVFFRSLI 108
BLAST of LR48_mrnaVigan07g283600 vs. DB:Swiss
Match: AX6B_SOYBN (Auxin-induced protein 6B OS=Glycine max OX=3847 PE=2 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 6.378e-16 Identity = 37/80 (46.25%), Postives = 51/80 (63.75%), Query Frame = 1 Query: 70 KARMSANRTPS---DVPAGHVAVCVGTNLTRFVVRATYLNHPVFKKLLLQAEEEYGFSN-HGPLVIPCDEMLFHEVLRFI 297 KA SAN+ S DV G++AV VG + RFV+ +YLN P F+ LL QAEEE+G+ + +G L IPC E +F + F+ Sbjct: 10 KASFSANQASSKAVDVEKGYLAVYVGEKMRRFVIPVSYLNKPSFQDLLSQAEEEFGYHHPNGGLTIPCSEDVFQHITSFL 89
BLAST of LR48_mrnaVigan07g283600 vs. DB:Swiss
Match: ARG7_VIGRR (Indole-3-acetic acid-induced protein ARG7 OS=Vigna radiata var. radiata OX=3916 GN=ARG7 PE=2 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 1.475e-15 Identity = 35/77 (45.45%), Postives = 49/77 (63.64%), Query Frame = 1 Query: 73 ARMSANRTPSDVPAGHVAVCVGTNLTRFVVRATYLNHPVFKKLLLQAEEEYGFSN-HGPLVIPCDEMLFHEVLRFIS 300 AR A+ D P G++AV VG N+ RFV+ ++LN P+F+ LL QAEEE+G+ + G L IPC E LF + +S Sbjct: 14 ARNEASSKVLDAPKGYLAVYVGENMKRFVIPVSHLNQPLFQDLLSQAEEEFGYDHPMGGLTIPCSEDLFQHITSCLS 90
BLAST of LR48_mrnaVigan07g283600 vs. DB:Swiss
Match: SAU72_ARATH (Auxin-responsive protein SAUR72 OS=Arabidopsis thaliana OX=3702 GN=SAUR72 PE=2 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 1.533e-14 Identity = 37/98 (37.76%), Postives = 53/98 (54.08%), Query Frame = 1 Query: 61 WRNKARMSANRTPSDVPAGHVAVCVGTNLTRFVVRATYLNHPVFKKLLLQAEEEYGFSNHGPLVIPCDEMLFHEVLRFISWSESAKPNRFVNLELDDL 354 R+ + + S VP GHV V VG + RFVV A LNHPVF LL ++ +EYG+ G L IPC ++F ++ ES + V +++ DL Sbjct: 35 LRSSVTRRSKKQTSSVPEGHVPVYVGDEMERFVVSAELLNHPVFIGLLNRSAQEYGYEQKGVLQIPCHVLVFERIM------ESLRLGLPVPIDVQDL 126
BLAST of LR48_mrnaVigan07g283600 vs. DB:Swiss
Match: AX15A_SOYBN (Auxin-induced protein 15A OS=Glycine max OX=3847 PE=2 SV=1) HSP 1 Score: 66.6254 bits (161), Expect = 4.035e-14 Identity = 31/61 (50.82%), Postives = 41/61 (67.21%), Query Frame = 1 Query: 100 SDVPAGHVAVCVGTNLTRFVVRATYLNHPVFKKLLLQAEEEYGFSN-HGPLVIPCDEMLFH 279 +D P G++AV VG L RFV+ +YLN P F+ LL QAEEE+G+ + G L IPC E +F Sbjct: 15 ADAPKGYLAVYVGEKLKRFVIPVSYLNQPSFQDLLSQAEEEFGYDHPMGGLTIPCSEDVFQ 75
BLAST of LR48_mrnaVigan07g283600 vs. DB:Swiss
Match: SAU40_ARATH (Auxin-responsive protein SAUR40 OS=Arabidopsis thaliana OX=3702 GN=SAUR40 PE=2 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 4.241e-14 Identity = 32/63 (50.79%), Postives = 43/63 (68.25%), Query Frame = 1 Query: 100 SDVPAGHVAVCVGTNLTRFVVRATYLNHPVFKKLLLQAEEEYGFSNHGPLVIPCDEMLFHEVL 288 S VP+GHV V VG + RFVV A LNHPVF LL ++ +EYG++ G L IPC+ +F +V+ Sbjct: 46 SSVPSGHVPVNVGEDKERFVVSAELLNHPVFVGLLNRSAQEYGYTQKGVLHIPCNVFVFEQVV 108
BLAST of LR48_mrnaVigan07g283600 vs. DB:Swiss
Match: AXX15_SOYBN (Auxin-induced protein X15 OS=Glycine max OX=3847 PE=2 SV=1) HSP 1 Score: 65.855 bits (159), Expect = 8.120e-14 Identity = 29/62 (46.77%), Postives = 41/62 (66.13%), Query Frame = 1 Query: 103 DVPAGHVAVCVGTNLTRFVVRATYLNHPVFKKLLLQAEEEYGFSN-HGPLVIPCDEMLFHEV 285 D P G++AV VG + RFV+ +Y+N P F+ LL QAEEE+G+ + G L IPC E +F + Sbjct: 16 DAPKGYLAVYVGEKMKRFVIPVSYMNQPSFQDLLTQAEEEFGYDHPMGGLTIPCSEEVFQRI 77
BLAST of LR48_mrnaVigan07g283600 vs. DB:Swiss
Match: A10A5_SOYBN (Auxin-induced protein 10A5 OS=Glycine max OX=3847 PE=2 SV=1) HSP 1 Score: 65.4698 bits (158), Expect = 1.757e-13 Identity = 34/81 (41.98%), Postives = 49/81 (60.49%), Query Frame = 1 Query: 37 RLRQMLRRWRNKARMSANRTPSDVPAGHVAVCVGTNLTRFVVRATYLNHPVFKKLLLQAEEEYGFSN-HGPLVIPCDEMLF 276 R+ ++RR +A++ DVP G+ AV VG + RF + +YLN P F++LL QAEEE+G+ + G L IPC E F Sbjct: 4 RIAGIVRRTSFYTTQAASKR-VDVPKGYAAVYVGDKMRRFTIPVSYLNEPSFQELLSQAEEEFGYDHPMGGLTIPCKEEEF 83 The following BLAST results are available for this feature:
BLAST of LR48_mrnaVigan07g283600 vs. DB:Swiss
Analysis Date: 2020-05-21 (BLAST: V. angularis Jingnong 6 genome v1.1) Total hits: 10
InterPro
Analysis Name: InterProScan: Vigna angularis Jingnong 6 genome v1.1
Date Performed: 2020-05-21
Sequences
The
following sequences are available for this feature:
mRNA sequence >LR48_mrnaVigan07g283600_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan07g283600_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan07g283600; organism=Vigna angularis; type=mRNA; length=450bpback to top protein sequence of LR48_mrnaVigan07g283600_Va_Jingnong6_v1.1 >LR48_mrnaVigan07g283600_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan07g283600_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan07g283600_Va_Jingnong6_v1.1; organism=Vigna angularis; type=polypeptide; length=149bpback to top mRNA from alignment at Chr_7-CM003377.1:38952925..38953374+ Legend: polypeptidestart_codonexonCDSstop_codon Hold the cursor over a type above to highlight its positions in the sequence below.>LR48_mrnaVigan07g283600_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan07g283600_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan07g283600; organism=Vigna angularis; type=mRNA; length=450bp; location=Sequence derived from: Chr_7-CM003377.1:38952925..38953374+ (Vigna angularisback to top Coding sequence (CDS) from alignment at Chr_7-CM003377.1:38952925..38953374+ >LR48_mrnaVigan07g283600_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan07g283600_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan07g283600; organism=Vigna angularis; type=CDS; length=450bp; location=Sequence derived from: Chr_7-CM003377.1:38952925..38953374+ (Vigna angularisback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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