LR48_mrnaVigan11g021500

Transcript Overview
NameLR48_mrnaVigan11g021500
Unique NameLR48_mrnaVigan11g021500_Va_Jingnong6_v1.1
TypemRNA
OrganismVigna angularis (Adzuki bean, red mung bean, azuki)
Sequence length924
Producthypothetical protein
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr_11-CM003381.1supercontigChr_11-CM003381.1:2380786..2381709 -Vigna angularis Jingnong 6 genome v1.1n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Vigna angularis Jingnong 6 genome v1.12020-05-19
InterProScan: Vigna angularis Jingnong 6 genome v1.12020-05-21
BLAST: V. angularis Jingnong 6 genome v1.12020-05-21
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
ascaR317Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ascaR330Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ascaR346Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
anasL0158Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anasL0545Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anasL1079Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anasL1303Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ascaiR390Cicer arietinum ICC 4958 genome v2Cicer arietinum
ascaiR400Cicer arietinum ICC 4958 genome v2Cicer arietinum
ascaiR418Cicer arietinum ICC 4958 genome v2Cicer arietinum
asccR0493Cajanus cajan Asha genome v1.0Cajanus cajan
asccR0512Cajanus cajan Asha genome v1.0Cajanus cajan
ascrR367Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
ascrR374Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
ascrR376Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
ascrR395Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
aspsR320Pisum sativum Cameor genome v1aPisum sativum
aspsR339Pisum sativum Cameor genome v1aPisum sativum
aspvR343Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
aspvR367Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
asvuR281Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
asvuR304Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
astifR323Vicia faba cv. Tiffany genome v1.0Vicia faba
astifR336Vicia faba cv. Tiffany genome v1.0Vicia faba
astifR354Vicia faba cv. Tiffany genome v1.0Vicia faba
asvfhR343Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
asvfhR353Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
asvfhR366Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
asvrvR299Vigna radiata cv. VC1973A genome v6.0Vigna radiata
asvssR351Vicia sativa cv. Studenica genome v1.0Vicia sativa
asvssR363Vicia sativa cv. Studenica genome v1.0Vicia sativa
asvssR368Vicia sativa cv. Studenica genome v1.0Vicia sativa
asvssR372Vicia sativa cv. Studenica genome v1.0Vicia sativa
asvuaR261Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
asvuaR284Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
ascanR281Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
ascanR293Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
ascanR299Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
ascanR311Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum

Orthologs
Gene/TranscriptAssemblySpecies
evm.model.Chr10.1432Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
rna-KK1_011262Cajanus cajan Asha genome v1.0Cajanus cajan
Phvul.010G117200.2Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
jg54291.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Vfaba.Tiffany.R1.2g108440.1Vicia faba cv. Tiffany genome v1.0Vicia faba
Ca_04027Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
Cr_12306.1Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
Vfaba.Tiffany.R1.4g040320.1Vicia faba cv. Tiffany genome v1.0Vicia faba
Vfaba.Hedin2.R1.4g051640.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
Cr_18198.1Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
Psat4g216920.1Pisum sativum Cameor genome v1aPisum sativum
Vigun10g149700.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
rna-TanjilR_11179Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
rna-KK1_014577Cajanus cajan Asha genome v1.0Cajanus cajan
rna-TanjilR_05583Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Ca_14243.1Cicer arietinum ICC 4958 genome v2Cicer arietinum
rna-NM_001365216.1Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
Ca_17608Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
jg15803.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
rna-XM_004502662.3Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
gene-LR48_Vigan11g021500gene-LR48_Vigan11g021500_Va_Jingnong6_v1.1Vigna angularisgene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
LR48_mrnaVigan11g021500LR48_mrnaVigan11g021500_Va_Jingnong6_v1.1-proteinVigna angularispolypeptide
LR48_mrnaVigan11g021500_Va_Jingnong6_v1.1LR48_mrnaVigan11g021500_Va_Jingnong6_v1.1Vigna angularispolypeptide


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
LR48_mrnaVigan11g021500_Va_Jingnong6_v1.1-start_codon-Chr_11-CM003381.1_Va_Jingnong6_v1.1-1589992784:2381707..2381709LR48_mrnaVigan11g021500_Va_Jingnong6_v1.1-start_codon-Chr_11-CM003381.1_Va_Jingnong6_v1.1-1589992784:2381707..2381709Vigna angularisstart_codon


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
LR48_mrnaVigan11g021500_Va_Jingnong6_v1.1-exon-Chr_11-CM003381.1_Va_Jingnong6_v1.1-1589992784:2381344..2381709LR48_mrnaVigan11g021500_Va_Jingnong6_v1.1-exon-Chr_11-CM003381.1_Va_Jingnong6_v1.1-1589992784:2381344..2381709Vigna angularisexon
LR48_mrnaVigan11g021500_Va_Jingnong6_v1.1-exon-Chr_11-CM003381.1_Va_Jingnong6_v1.1-1589992784:2380786..2381145LR48_mrnaVigan11g021500_Va_Jingnong6_v1.1-exon-Chr_11-CM003381.1_Va_Jingnong6_v1.1-1589992784:2380786..2381145Vigna angularisexon


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
LR48_mrnaVigan11g021500_Va_Jingnong6_v1.1-intron-Chr_11-CM003381.1_Va_Jingnong6_v1.1-1589992784:2381146..2381343LR48_mrnaVigan11g021500_Va_Jingnong6_v1.1-intron-Chr_11-CM003381.1_Va_Jingnong6_v1.1-1589992784:2381146..2381343Vigna angularisintron


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS13465CDS13465_Va_Jingnong6_v1.1Vigna angularisCDS


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
LR48_mrnaVigan11g021500_Va_Jingnong6_v1.1-stop_codon-Chr_11-CM003381.1_Va_Jingnong6_v1.1-1589992784:2380786..2380788LR48_mrnaVigan11g021500_Va_Jingnong6_v1.1-stop_codon-Chr_11-CM003381.1_Va_Jingnong6_v1.1-1589992784:2380786..2380788Vigna angularisstop_codon


Homology
[Close]
BLAST of LR48_mrnaVigan11g021500 vs. DB:Swiss
Match: ATHB7_ARATH (Homeobox-leucine zipper protein ATHB-7 OS=Arabidopsis thaliana OX=3702 GN=ATHB-7 PE=1 SV=2)

HSP 1 Score: 203.371 bits (516), Expect = 5.392e-64
Identity = 119/234 (50.85%), Postives = 155/234 (66.24%), Query Frame = 1 
Query:   79 RSKKKSNNTRRFSDDQIKSLETMFETESRLEPRKKLQLARDLGLQPRQVAIWFQNKRARWKSKQLERDYGILQSNYNSLASRFEALKKEKQTLLIQLQKLNHLMQKPLEAGQSRTQ----VEAANRMDSESENGGTMKCELEE-KPSPSIERSEHAHGVLSD-----DD-----ASIKVEHFG--LEDEHGLLNFAEHADDSLTSPEDWSAFESD--GLLGQTTSDYQWWDFWS 723
            +S    NN RRFSD+QIKSLE MFE+E+RLEPRKK+QLAR+LGLQPRQVAIWFQNKRARWKSKQLE +Y IL+ NY++LAS+FE+LKKEKQ L+ +LQ+L    QK  +  + +      V A +    ESEN    + + EE +P   ++  +  HGV+ D     DD      +IK E+FG   E+   L+N  E AD  LTS +DW  F+SD   LL Q++++Y W DFWS
Sbjct:   25 KSNHNKNNQRRFSDEQIKSLEMMFESETRLEPRKKVQLARELGLQPRQVAIWFQNKRARWKSKQLETEYNILRQNYDNLASQFESLKKEKQALVSELQRLKEATQKKTQEEERQCSGDQAVVALSSTHHESENEENRRRKPEEVRPEMEMKDDKGHHGVMCDHHDYEDDDNGYSNNIKREYFGGFEEEPDHLMNIVEPADSCLTSSDDWRGFKSDTTTLLDQSSNNYPWRDFWS 258
[Close]
BLAST of LR48_mrnaVigan11g021500 vs. DB:Swiss
Match: ATB12_ARATH (Homeobox-leucine zipper protein ATHB-12 OS=Arabidopsis thaliana OX=3702 GN=ATHB-12 PE=1 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 2.173e-59
Identity = 112/214 (52.34%), Postives = 151/214 (70.56%), Query Frame = 1 
Query:  109 RFSDDQIKSLETMFETESRLEPRKKLQLARDLGLQPRQVAIWFQNKRARWKSKQLERDYGILQSNYNSLASRFEALKKEKQTLLIQLQKLNHLMQKPLEAGQSRTQVEAANRMDS--ESENGGTMKCELEEKPSPSIERSEHAHGVLSDD---DASIKVEHFGLEDE--HGLLNFAEHADDS-LTSPEDWSAFESDGLLGQTTSDY-QWWDFWS 723
            RFS++QIKSLE +FE+E+RLEPRKK+Q+AR+LGLQPRQVAIWFQNKRARWK+KQLE++Y  L++NYN+LAS+FE +KKEKQ+L+ +LQ+LN  MQ+P E        +    + S  ES NG +       +P   +++      VL +D   + +IK E+FG E+E  H L+N  E ADDS LTS E+W  F SD LL Q++S+Y  WW+FWS
Sbjct:   33 RFSEEQIKSLELIFESETRLEPRKKVQVARELGLQPRQVAIWFQNKRARWKTKQLEKEYNTLRANYNNLASQFEIMKKEKQSLVSELQRLNEEMQRPKEEKHHECCGDQGLALSSSTESHNGKS-------EPEGRLDQG----SVLCNDGDYNNNIKTEYFGFEEETDHELMNIVEKADDSCLTSSENWGGFNSDSLLDQSSSNYPNWWEFWS 235
[Close]
BLAST of LR48_mrnaVigan11g021500 vs. DB:Swiss
Match: HOX6_ORYSJ (Homeobox-leucine zipper protein HOX6 OS=Oryza sativa subsp. japonica OX=39947 GN=HOX6 PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.620e-40
Identity = 65/102 (63.73%), Postives = 88/102 (86.27%), Query Frame = 1 
Query:   94 SNNTRRFSDDQIKSLETMFETESRLEPRKKLQLARDLGLQPRQVAIWFQNKRARWKSKQLERDYGILQSNYNSLASRFEALKKEKQTLLIQLQKLNHLMQKP 399
            ++  +RFS++QIKSLE+MF T+++LEPR+KLQLAR+LGLQPRQVAIWFQNKRARWKSKQLER+Y  L+ +Y++L   +E+LKKEK  L+ QL+KL  ++Q+P
Sbjct:   28 ADRKKRFSEEQIKSLESMFATQTKLEPRQKLQLARELGLQPRQVAIWFQNKRARWKSKQLEREYSALRDDYDALLCSYESLKKEKLALIKQLEKLAEMLQEP 129
[Close]
BLAST of LR48_mrnaVigan11g021500 vs. DB:Swiss
Match: HOX6_ORYSI (Homeobox-leucine zipper protein HOX6 OS=Oryza sativa subsp. indica OX=39946 GN=HOX6 PE=2 SV=2)

HSP 1 Score: 142.51 bits (358), Expect = 1.620e-40
Identity = 65/102 (63.73%), Postives = 88/102 (86.27%), Query Frame = 1 
Query:   94 SNNTRRFSDDQIKSLETMFETESRLEPRKKLQLARDLGLQPRQVAIWFQNKRARWKSKQLERDYGILQSNYNSLASRFEALKKEKQTLLIQLQKLNHLMQKP 399
            ++  +RFS++QIKSLE+MF T+++LEPR+KLQLAR+LGLQPRQVAIWFQNKRARWKSKQLER+Y  L+ +Y++L   +E+LKKEK  L+ QL+KL  ++Q+P
Sbjct:   28 ADRKKRFSEEQIKSLESMFATQTKLEPRQKLQLARELGLQPRQVAIWFQNKRARWKSKQLEREYSALRDDYDALLCSYESLKKEKLALIKQLEKLAEMLQEP 129
[Close]
BLAST of LR48_mrnaVigan11g021500 vs. DB:Swiss
Match: HOX22_ORYSJ (Homeobox-leucine zipper protein HOX22 OS=Oryza sativa subsp. japonica OX=39947 GN=HOX22 PE=2 SV=2)

HSP 1 Score: 122.479 bits (306), Expect = 1.820e-32
Identity = 58/89 (65.17%), Postives = 75/89 (84.27%), Query Frame = 1 
Query:  106 RRFSDDQIKSLETMFETE-SRLEPRKKLQLARDLGLQPRQVAIWFQNKRARWKSKQLERDYGILQSNYNSLASRFEALKKEKQTLLIQL 369
            RRF+++QI+SLE+MF    ++LEPR+K +LAR+LGLQPRQVAIWFQNKRARW+SKQLE DY  L+S Y++L SR E+LK+EK  L +QL
Sbjct:   75 RRFTEEQIRSLESMFHAHHAKLEPREKAELARELGLQPRQVAIWFQNKRARWRSKQLEHDYAALRSKYDALHSRVESLKQEKLALTVQL 163
[Close]
BLAST of LR48_mrnaVigan11g021500 vs. DB:Swiss
Match: HOX22_ORYSI (Homeobox-leucine zipper protein HOX22 OS=Oryza sativa subsp. indica OX=39946 GN=HOX22 PE=2 SV=2)

HSP 1 Score: 122.479 bits (306), Expect = 1.820e-32
Identity = 58/89 (65.17%), Postives = 75/89 (84.27%), Query Frame = 1 
Query:  106 RRFSDDQIKSLETMFETE-SRLEPRKKLQLARDLGLQPRQVAIWFQNKRARWKSKQLERDYGILQSNYNSLASRFEALKKEKQTLLIQL 369
            RRF+++QI+SLE+MF    ++LEPR+K +LAR+LGLQPRQVAIWFQNKRARW+SKQLE DY  L+S Y++L SR E+LK+EK  L +QL
Sbjct:   75 RRFTEEQIRSLESMFHAHHAKLEPREKAELARELGLQPRQVAIWFQNKRARWRSKQLEHDYAALRSKYDALHSRVESLKQEKLALTVQL 163
[Close]
BLAST of LR48_mrnaVigan11g021500 vs. DB:Swiss
Match: HOX20_ORYSJ (Homeobox-leucine zipper protein HOX20 OS=Oryza sativa subsp. japonica OX=39947 GN=HOX20 PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.686e-31
Identity = 52/91 (57.14%), Postives = 76/91 (83.52%), Query Frame = 1 
Query:  106 RRFSDDQIKSLETMFETESRLEPRKKLQLARDLGLQPRQVAIWFQNKRARWKSKQLERDYGILQSNYNSLASRFEALKKEKQTLLIQLQKL 378
            RR S +Q+++LE  FETE++LEP +K +LARDLGLQPRQVA+WFQN+RARWK+KQLERDY  L+ +Y++L +  +AL+++K  LL ++++L
Sbjct:   45 RRLSVEQVRALERSFETENKLEPERKARLARDLGLQPRQVAVWFQNRRARWKTKQLERDYAALRQSYDALRADHDALRRDKDALLAEIKEL 135
[Close]
BLAST of LR48_mrnaVigan11g021500 vs. DB:Swiss
Match: HOX20_ORYSI (Homeobox-leucine zipper protein HOX20 OS=Oryza sativa subsp. indica OX=39946 GN=HOX20 PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.686e-31
Identity = 52/91 (57.14%), Postives = 76/91 (83.52%), Query Frame = 1 
Query:  106 RRFSDDQIKSLETMFETESRLEPRKKLQLARDLGLQPRQVAIWFQNKRARWKSKQLERDYGILQSNYNSLASRFEALKKEKQTLLIQLQKL 378
            RR S +Q+++LE  FETE++LEP +K +LARDLGLQPRQVA+WFQN+RARWK+KQLERDY  L+ +Y++L +  +AL+++K  LL ++++L
Sbjct:   45 RRLSVEQVRALERSFETENKLEPERKARLARDLGLQPRQVAVWFQNRRARWKTKQLERDYAALRQSYDALRADHDALRRDKDALLAEIKEL 135
[Close]
BLAST of LR48_mrnaVigan11g021500 vs. DB:Swiss
Match: ATHB6_ARATH (Homeobox-leucine zipper protein ATHB-6 OS=Arabidopsis thaliana OX=3702 GN=ATHB-6 PE=1 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 7.156e-31
Identity = 52/95 (54.74%), Postives = 79/95 (83.16%), Query Frame = 1 
Query:   94 SNNTRRFSDDQIKSLETMFETESRLEPRKKLQLARDLGLQPRQVAIWFQNKRARWKSKQLERDYGILQSNYNSLASRFEALKKEKQTLLIQLQKL 378
            S   RR S +Q+K+LE  FE E++LEP +K++LA++LGLQPRQVA+WFQN+RARWK+KQLE+DYG+L++ Y+SL   F++L+++ ++LL ++ KL
Sbjct:   60 SEKKRRLSINQVKALEKNFELENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLEKDYGVLKTQYDSLRHNFDSLRRDNESLLQEISKL 154
[Close]
BLAST of LR48_mrnaVigan11g021500 vs. DB:Swiss
Match: ATB16_ARATH (Homeobox-leucine zipper protein ATHB-16 OS=Arabidopsis thaliana OX=3702 GN=ATHB-16 PE=2 SV=2)

HSP 1 Score: 117.472 bits (293), Expect = 2.079e-30
Identity = 50/91 (54.95%), Postives = 74/91 (81.32%), Query Frame = 1 
Query:  106 RRFSDDQIKSLETMFETESRLEPRKKLQLARDLGLQPRQVAIWFQNKRARWKSKQLERDYGILQSNYNSLASRFEALKKEKQTLLIQLQKL 378
            RR   DQ+K+LE  FE E++LEP +K +LA++LGLQPRQVA+WFQN+RARWK+KQLE+DYG+L+  Y+SL   F++L+++  +LL ++ K+
Sbjct:   61 RRLKVDQVKALEKNFELENKLEPERKTKLAQELGLQPRQVAVWFQNRRARWKTKQLEKDYGVLKGQYDSLRHNFDSLRRDNDSLLQEISKI 151
The following BLAST results are available for this feature:
BLAST of LR48_mrnaVigan11g021500 vs. DB:Swiss
Analysis Date: 2020-05-21 (BLAST: V. angularis Jingnong 6 genome v1.1)
Total hits: 10
Match NameE-valueIdentityDescription
ATHB7_ARATH5.392e-6450.85Homeobox-leucine zipper protein ATHB-7 OS=Arabidop... [more]
ATB12_ARATH2.173e-5952.34Homeobox-leucine zipper protein ATHB-12 OS=Arabido... [more]
HOX6_ORYSJ1.620e-4063.73Homeobox-leucine zipper protein HOX6 OS=Oryza sati... [more]
HOX6_ORYSI1.620e-4063.73Homeobox-leucine zipper protein HOX6 OS=Oryza sati... [more]
HOX22_ORYSJ1.820e-3265.17Homeobox-leucine zipper protein HOX22 OS=Oryza sat... [more]
HOX22_ORYSI1.820e-3265.17Homeobox-leucine zipper protein HOX22 OS=Oryza sat... [more]
HOX20_ORYSJ2.686e-3157.14Homeobox-leucine zipper protein HOX20 OS=Oryza sat... [more]
HOX20_ORYSI2.686e-3157.14Homeobox-leucine zipper protein HOX20 OS=Oryza sat... [more]
ATHB6_ARATH7.156e-3154.74Homeobox-leucine zipper protein ATHB-6 OS=Arabidop... [more]
ATB16_ARATH2.079e-3054.95Homeobox-leucine zipper protein ATHB-16 OS=Arabido... [more]
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InterPro
Analysis Name: InterProScan: Vigna angularis Jingnong 6 genome v1.1
Date Performed: 2020-05-21
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 109..129
NoneNo IPR availableGENE3D1.10.10.60coord: 18..97
e-value: 7.4E-18
score: 65.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 10..29
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..42
IPR000047Helix-turn-helix motifPRINTSPR00031HTHREPRESSRcoord: 60..69
score: 43.59
coord: 69..85
score: 59.39
IPR001356Homeobox domainSMARTSM00389HOX_1coord: 32..93
e-value: 1.9E-15
score: 67.3
IPR001356Homeobox domainPFAMPF00046Homeodomaincoord: 36..87
e-value: 2.4E-16
score: 59.2
IPR001356Homeobox domainPROSITEPS50071HOMEOBOX_2coord: 29..89
score: 17.086
IPR001356Homeobox domainCDDcd00086homeodomaincoord: 36..90
e-value: 1.076E-13
score: 61.8756
IPR003106Leucine zipper, homeobox-associatedPFAMPF02183HALZcoord: 89..131
e-value: 1.9E-16
score: 59.9
IPR017970Homeobox, conserved sitePROSITEPS00027HOMEOBOX_1coord: 64..87
IPR009057Homeobox-like domain superfamilySUPERFAMILY46689Homeodomain-likecoord: 14..91

Sequences
The following sequences are available for this feature:

mRNA sequence

>LR48_mrnaVigan11g021500_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan11g021500_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan11g021500; organism=Vigna angularis; type=mRNA; length=924bp
ATGGAATATACTTATTCAGCAGAGGGTGCAGAGGCTGAAACTTACACCAG
TAGCAGCACCACCCCATCAAGTGGCATCAGATCAAAGAAGAAAAGCAACA
ACACAAGAAGGTTCAGTGATGATCAAATCAAATCTTTGGAAACCATGTTT
GAGACAGAGTCAAGGCTAGAGCCTAGAAAGAAGTTGCAGCTGGCAAGAGA
CCTTGGATTGCAGCCAAGACAGGTTGCTATATGGTTTCAGAACAAGAGAG
CTAGGTGGAAGTCAAAGCAACTCGAGAGAGACTATGGTATACTACAATCC
AATTACAACAGTTTAGCCTCACGTTTTGAAGCTCTCAAGAAGGAAAAACA
AACATTACTAATTCAGGTACTTTATTCAATACAGATTAACATATTCTTTA
GTGTTTTTAGTATTGTTCTTCAATTAGAATTGAAGTTTTACTTCATTAAT
TGGGTTATGGATAGGAAGATTCTTGAAATGAATGAAAGTACAGTTCTGAG
TTTTGTCCAAGATATGTATCAATTTCTGTAAAGTAAAATTGTTTTTTGTA
TCTGTTGTCATCAGTTGCAGAAGCTGAATCATCTAATGCAGAAGCCATTG
GAGGCAGGTCAGAGTCGGACACAAGTTGAAGCAGCAAACAGAATGGACAG
TGAATCAGAAAATGGAGGCACCATGAAATGTGAGCTCGAGGAAAAGCCAA
GCCCATCCATAGAAAGATCAGAACATGCACACGGCGTTCTGTCTGATGAT
GATGCTAGCATAAAGGTGGAACACTTTGGCCTAGAAGATGAACATGGTCT
CTTGAACTTTGCTGAGCATGCTGATGACTCCTTGACTTCACCGGAAGATT
GGAGTGCTTTCGAATCCGATGGTCTCTTAGGCCAAACGACCAGTGATTAC
CAATGGTGGGACTTCTGGTCCTGA
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protein sequence of LR48_mrnaVigan11g021500_Va_Jingnong6_v1.1

>LR48_mrnaVigan11g021500_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan11g021500_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan11g021500_Va_Jingnong6_v1.1; organism=Vigna angularis; type=polypeptide; length=241bp
MEYTYSAEGAEAETYTSSSTTPSSGIRSKKKSNNTRRFSDDQIKSLETMF
ETESRLEPRKKLQLARDLGLQPRQVAIWFQNKRARWKSKQLERDYGILQS
NYNSLASRFEALKKEKQTLLIQLQKLNHLMQKPLEAGQSRTQVEAANRMD
SESENGGTMKCELEEKPSPSIERSEHAHGVLSDDDASIKVEHFGLEDEHG
LLNFAEHADDSLTSPEDWSAFESDGLLGQTTSDYQWWDFWS
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mRNA from alignment at Chr_11-CM003381.1:2380786..2381709-

Legend: polypeptidestart_codonexonCDSintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>LR48_mrnaVigan11g021500_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan11g021500_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan11g021500; organism=Vigna angularis; type=mRNA; length=924bp; location=Sequence derived from: Chr_11-CM003381.1:2380786..2381709- (Vigna angularis
ATGGAATATACTTATTCAGCAGAGGGTGCAGAGGCTGAAACTTACACCAG
TAGCAGCACCACCCCATCAAGTGGCATCAGATCAAAGAAGAAAAGCAACA
ACACAAGAAGGTTCAGTGATGATCAAATCAAATCTTTGGAAACCATGTTT
GAGACAGAGTCAAGGCTAGAGCCTAGAAAGAAGTTGCAGCTGGCAAGAGA
CCTTGGATTGCAGCCAAGACAGGTTGCTATATGGTTTCAGAACAAGAGAG
CTAGGTGGAAGTCAAAGCAACTCGAGAGAGACTATGGTATACTACAATCC
AATTACAACAGTTTAGCCTCACGTTTTGAAGCTCTCAAGAAGGAAAAACA
AACATTACTAATTCAGGTACTTTATTCAATACAGATTAACATATTCTTTA
GTGTTTTTAGTATTGTTCTTCAATTAGAATTGAAGTTTTACTTCATTAAT
TGGGTTATGGATAGGAAGATTCTTGAAATGAATGAAAGTACAGTTCTGAG
TTTTGTCCAAGATATGTATCAATTTCTGTAAAGTAAAATTGTTTTTTGTA
TCTGTTGTCATCAGTTGCAGAAGCTGAATCATCTAATGCAGAAGCCATTG
GAGGCAGGTCAGAGTCGGACACAAGTTGAAGCAGCAAACAGAATGGACAG
TGAATCAGAAAATGGAGGCACCATGAAATGTGAGCTCGAGGAAAAGCCAA
GCCCATCCATAGAAAGATCAGAACATGCACACGGCGTTCTGTCTGATGAT
GATGCTAGCATAAAGGTGGAACACTTTGGCCTAGAAGATGAACATGGTCT
CTTGAACTTTGCTGAGCATGCTGATGACTCCTTGACTTCACCGGAAGATT
GGAGTGCTTTCGAATCCGATGGTCTCTTAGGCCAAACGACCAGTGATTAC
CAATGGTGGGACTTCTGGTCCTGA
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Coding sequence (CDS) from alignment at Chr_11-CM003381.1:2380786..2381709-

>LR48_mrnaVigan11g021500_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan11g021500_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan11g021500; organism=Vigna angularis; type=CDS; length=726bp; location=Sequence derived from: Chr_11-CM003381.1:2380786..2381709- (Vigna angularis
ATGGAATATACTTATTCAGCAGAGGGTGCAGAGGCTGAAACTTACACCAG
TAGCAGCACCACCCCATCAAGTGGCATCAGATCAAAGAAGAAAAGCAACA
ACACAAGAAGGTTCAGTGATGATCAAATCAAATCTTTGGAAACCATGTTT
GAGACAGAGTCAAGGCTAGAGCCTAGAAAGAAGTTGCAGCTGGCAAGAGA
CCTTGGATTGCAGCCAAGACAGGTTGCTATATGGTTTCAGAACAAGAGAG
CTAGGTGGAAGTCAAAGCAACTCGAGAGAGACTATGGTATACTACAATCC
AATTACAACAGTTTAGCCTCACGTTTTGAAGCTCTCAAGAAGGAAAAACA
AACATTACTAATTCAGTTGCAGAAGCTGAATCATCTAATGCAGAAGCCAT
TGGAGGCAGGTCAGAGTCGGACACAAGTTGAAGCAGCAAACAGAATGGAC
AGTGAATCAGAAAATGGAGGCACCATGAAATGTGAGCTCGAGGAAAAGCC
AAGCCCATCCATAGAAAGATCAGAACATGCACACGGCGTTCTGTCTGATG
ATGATGCTAGCATAAAGGTGGAACACTTTGGCCTAGAAGATGAACATGGT
CTCTTGAACTTTGCTGAGCATGCTGATGACTCCTTGACTTCACCGGAAGA
TTGGAGTGCTTTCGAATCCGATGGTCTCTTAGGCCAAACGACCAGTGATT
ACCAATGGTGGGACTTCTGGTCCTGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR000047HTH_motif
IPR001356HD
IPR003106Leu_zip_homeo
IPR017970Homeobox_CS
IPR009057Homeodomain-like_sf
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0043565sequence-specific DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of DNA-templated transcription