LR48_mrnaVigan11g021500
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following start_codon feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following intron feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
Homology
BLAST of LR48_mrnaVigan11g021500 vs. DB:Swiss
Match: ATHB7_ARATH (Homeobox-leucine zipper protein ATHB-7 OS=Arabidopsis thaliana OX=3702 GN=ATHB-7 PE=1 SV=2) HSP 1 Score: 203.371 bits (516), Expect = 5.392e-64 Identity = 119/234 (50.85%), Postives = 155/234 (66.24%), Query Frame = 1 Query: 79 RSKKKSNNTRRFSDDQIKSLETMFETESRLEPRKKLQLARDLGLQPRQVAIWFQNKRARWKSKQLERDYGILQSNYNSLASRFEALKKEKQTLLIQLQKLNHLMQKPLEAGQSRTQ----VEAANRMDSESENGGTMKCELEE-KPSPSIERSEHAHGVLSD-----DD-----ASIKVEHFG--LEDEHGLLNFAEHADDSLTSPEDWSAFESD--GLLGQTTSDYQWWDFWS 723 +S NN RRFSD+QIKSLE MFE+E+RLEPRKK+QLAR+LGLQPRQVAIWFQNKRARWKSKQLE +Y IL+ NY++LAS+FE+LKKEKQ L+ +LQ+L QK + + + V A + ESEN + + EE +P ++ + HGV+ D DD +IK E+FG E+ L+N E AD LTS +DW F+SD LL Q++++Y W DFWS Sbjct: 25 KSNHNKNNQRRFSDEQIKSLEMMFESETRLEPRKKVQLARELGLQPRQVAIWFQNKRARWKSKQLETEYNILRQNYDNLASQFESLKKEKQALVSELQRLKEATQKKTQEEERQCSGDQAVVALSSTHHESENEENRRRKPEEVRPEMEMKDDKGHHGVMCDHHDYEDDDNGYSNNIKREYFGGFEEEPDHLMNIVEPADSCLTSSDDWRGFKSDTTTLLDQSSNNYPWRDFWS 258
BLAST of LR48_mrnaVigan11g021500 vs. DB:Swiss
Match: ATB12_ARATH (Homeobox-leucine zipper protein ATHB-12 OS=Arabidopsis thaliana OX=3702 GN=ATHB-12 PE=1 SV=1) HSP 1 Score: 190.66 bits (483), Expect = 2.173e-59 Identity = 112/214 (52.34%), Postives = 151/214 (70.56%), Query Frame = 1 Query: 109 RFSDDQIKSLETMFETESRLEPRKKLQLARDLGLQPRQVAIWFQNKRARWKSKQLERDYGILQSNYNSLASRFEALKKEKQTLLIQLQKLNHLMQKPLEAGQSRTQVEAANRMDS--ESENGGTMKCELEEKPSPSIERSEHAHGVLSDD---DASIKVEHFGLEDE--HGLLNFAEHADDS-LTSPEDWSAFESDGLLGQTTSDY-QWWDFWS 723 RFS++QIKSLE +FE+E+RLEPRKK+Q+AR+LGLQPRQVAIWFQNKRARWK+KQLE++Y L++NYN+LAS+FE +KKEKQ+L+ +LQ+LN MQ+P E + + S ES NG + +P +++ VL +D + +IK E+FG E+E H L+N E ADDS LTS E+W F SD LL Q++S+Y WW+FWS Sbjct: 33 RFSEEQIKSLELIFESETRLEPRKKVQVARELGLQPRQVAIWFQNKRARWKTKQLEKEYNTLRANYNNLASQFEIMKKEKQSLVSELQRLNEEMQRPKEEKHHECCGDQGLALSSSTESHNGKS-------EPEGRLDQG----SVLCNDGDYNNNIKTEYFGFEEETDHELMNIVEKADDSCLTSSENWGGFNSDSLLDQSSSNYPNWWEFWS 235
BLAST of LR48_mrnaVigan11g021500 vs. DB:Swiss
Match: HOX6_ORYSJ (Homeobox-leucine zipper protein HOX6 OS=Oryza sativa subsp. japonica OX=39947 GN=HOX6 PE=2 SV=1) HSP 1 Score: 142.51 bits (358), Expect = 1.620e-40 Identity = 65/102 (63.73%), Postives = 88/102 (86.27%), Query Frame = 1 Query: 94 SNNTRRFSDDQIKSLETMFETESRLEPRKKLQLARDLGLQPRQVAIWFQNKRARWKSKQLERDYGILQSNYNSLASRFEALKKEKQTLLIQLQKLNHLMQKP 399 ++ +RFS++QIKSLE+MF T+++LEPR+KLQLAR+LGLQPRQVAIWFQNKRARWKSKQLER+Y L+ +Y++L +E+LKKEK L+ QL+KL ++Q+P Sbjct: 28 ADRKKRFSEEQIKSLESMFATQTKLEPRQKLQLARELGLQPRQVAIWFQNKRARWKSKQLEREYSALRDDYDALLCSYESLKKEKLALIKQLEKLAEMLQEP 129
BLAST of LR48_mrnaVigan11g021500 vs. DB:Swiss
Match: HOX6_ORYSI (Homeobox-leucine zipper protein HOX6 OS=Oryza sativa subsp. indica OX=39946 GN=HOX6 PE=2 SV=2) HSP 1 Score: 142.51 bits (358), Expect = 1.620e-40 Identity = 65/102 (63.73%), Postives = 88/102 (86.27%), Query Frame = 1 Query: 94 SNNTRRFSDDQIKSLETMFETESRLEPRKKLQLARDLGLQPRQVAIWFQNKRARWKSKQLERDYGILQSNYNSLASRFEALKKEKQTLLIQLQKLNHLMQKP 399 ++ +RFS++QIKSLE+MF T+++LEPR+KLQLAR+LGLQPRQVAIWFQNKRARWKSKQLER+Y L+ +Y++L +E+LKKEK L+ QL+KL ++Q+P Sbjct: 28 ADRKKRFSEEQIKSLESMFATQTKLEPRQKLQLARELGLQPRQVAIWFQNKRARWKSKQLEREYSALRDDYDALLCSYESLKKEKLALIKQLEKLAEMLQEP 129
BLAST of LR48_mrnaVigan11g021500 vs. DB:Swiss
Match: HOX22_ORYSJ (Homeobox-leucine zipper protein HOX22 OS=Oryza sativa subsp. japonica OX=39947 GN=HOX22 PE=2 SV=2) HSP 1 Score: 122.479 bits (306), Expect = 1.820e-32 Identity = 58/89 (65.17%), Postives = 75/89 (84.27%), Query Frame = 1 Query: 106 RRFSDDQIKSLETMFETE-SRLEPRKKLQLARDLGLQPRQVAIWFQNKRARWKSKQLERDYGILQSNYNSLASRFEALKKEKQTLLIQL 369 RRF+++QI+SLE+MF ++LEPR+K +LAR+LGLQPRQVAIWFQNKRARW+SKQLE DY L+S Y++L SR E+LK+EK L +QL Sbjct: 75 RRFTEEQIRSLESMFHAHHAKLEPREKAELARELGLQPRQVAIWFQNKRARWRSKQLEHDYAALRSKYDALHSRVESLKQEKLALTVQL 163
BLAST of LR48_mrnaVigan11g021500 vs. DB:Swiss
Match: HOX22_ORYSI (Homeobox-leucine zipper protein HOX22 OS=Oryza sativa subsp. indica OX=39946 GN=HOX22 PE=2 SV=2) HSP 1 Score: 122.479 bits (306), Expect = 1.820e-32 Identity = 58/89 (65.17%), Postives = 75/89 (84.27%), Query Frame = 1 Query: 106 RRFSDDQIKSLETMFETE-SRLEPRKKLQLARDLGLQPRQVAIWFQNKRARWKSKQLERDYGILQSNYNSLASRFEALKKEKQTLLIQL 369 RRF+++QI+SLE+MF ++LEPR+K +LAR+LGLQPRQVAIWFQNKRARW+SKQLE DY L+S Y++L SR E+LK+EK L +QL Sbjct: 75 RRFTEEQIRSLESMFHAHHAKLEPREKAELARELGLQPRQVAIWFQNKRARWRSKQLEHDYAALRSKYDALHSRVESLKQEKLALTVQL 163
BLAST of LR48_mrnaVigan11g021500 vs. DB:Swiss
Match: HOX20_ORYSJ (Homeobox-leucine zipper protein HOX20 OS=Oryza sativa subsp. japonica OX=39947 GN=HOX20 PE=2 SV=1) HSP 1 Score: 119.398 bits (298), Expect = 2.686e-31 Identity = 52/91 (57.14%), Postives = 76/91 (83.52%), Query Frame = 1 Query: 106 RRFSDDQIKSLETMFETESRLEPRKKLQLARDLGLQPRQVAIWFQNKRARWKSKQLERDYGILQSNYNSLASRFEALKKEKQTLLIQLQKL 378 RR S +Q+++LE FETE++LEP +K +LARDLGLQPRQVA+WFQN+RARWK+KQLERDY L+ +Y++L + +AL+++K LL ++++L Sbjct: 45 RRLSVEQVRALERSFETENKLEPERKARLARDLGLQPRQVAVWFQNRRARWKTKQLERDYAALRQSYDALRADHDALRRDKDALLAEIKEL 135
BLAST of LR48_mrnaVigan11g021500 vs. DB:Swiss
Match: HOX20_ORYSI (Homeobox-leucine zipper protein HOX20 OS=Oryza sativa subsp. indica OX=39946 GN=HOX20 PE=2 SV=1) HSP 1 Score: 119.398 bits (298), Expect = 2.686e-31 Identity = 52/91 (57.14%), Postives = 76/91 (83.52%), Query Frame = 1 Query: 106 RRFSDDQIKSLETMFETESRLEPRKKLQLARDLGLQPRQVAIWFQNKRARWKSKQLERDYGILQSNYNSLASRFEALKKEKQTLLIQLQKL 378 RR S +Q+++LE FETE++LEP +K +LARDLGLQPRQVA+WFQN+RARWK+KQLERDY L+ +Y++L + +AL+++K LL ++++L Sbjct: 45 RRLSVEQVRALERSFETENKLEPERKARLARDLGLQPRQVAVWFQNRRARWKTKQLERDYAALRQSYDALRADHDALRRDKDALLAEIKEL 135
BLAST of LR48_mrnaVigan11g021500 vs. DB:Swiss
Match: ATHB6_ARATH (Homeobox-leucine zipper protein ATHB-6 OS=Arabidopsis thaliana OX=3702 GN=ATHB-6 PE=1 SV=1) HSP 1 Score: 119.013 bits (297), Expect = 7.156e-31 Identity = 52/95 (54.74%), Postives = 79/95 (83.16%), Query Frame = 1 Query: 94 SNNTRRFSDDQIKSLETMFETESRLEPRKKLQLARDLGLQPRQVAIWFQNKRARWKSKQLERDYGILQSNYNSLASRFEALKKEKQTLLIQLQKL 378 S RR S +Q+K+LE FE E++LEP +K++LA++LGLQPRQVA+WFQN+RARWK+KQLE+DYG+L++ Y+SL F++L+++ ++LL ++ KL Sbjct: 60 SEKKRRLSINQVKALEKNFELENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLEKDYGVLKTQYDSLRHNFDSLRRDNESLLQEISKL 154
BLAST of LR48_mrnaVigan11g021500 vs. DB:Swiss
Match: ATB16_ARATH (Homeobox-leucine zipper protein ATHB-16 OS=Arabidopsis thaliana OX=3702 GN=ATHB-16 PE=2 SV=2) HSP 1 Score: 117.472 bits (293), Expect = 2.079e-30 Identity = 50/91 (54.95%), Postives = 74/91 (81.32%), Query Frame = 1 Query: 106 RRFSDDQIKSLETMFETESRLEPRKKLQLARDLGLQPRQVAIWFQNKRARWKSKQLERDYGILQSNYNSLASRFEALKKEKQTLLIQLQKL 378 RR DQ+K+LE FE E++LEP +K +LA++LGLQPRQVA+WFQN+RARWK+KQLE+DYG+L+ Y+SL F++L+++ +LL ++ K+ Sbjct: 61 RRLKVDQVKALEKNFELENKLEPERKTKLAQELGLQPRQVAVWFQNRRARWKTKQLEKDYGVLKGQYDSLRHNFDSLRRDNDSLLQEISKI 151 The following BLAST results are available for this feature:
BLAST of LR48_mrnaVigan11g021500 vs. DB:Swiss
Analysis Date: 2020-05-21 (BLAST: V. angularis Jingnong 6 genome v1.1) Total hits: 10
InterPro
Analysis Name: InterProScan: Vigna angularis Jingnong 6 genome v1.1
Date Performed: 2020-05-21
Sequences
The
following sequences are available for this feature:
mRNA sequence >LR48_mrnaVigan11g021500_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan11g021500_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan11g021500; organism=Vigna angularis; type=mRNA; length=924bpback to top protein sequence of LR48_mrnaVigan11g021500_Va_Jingnong6_v1.1 >LR48_mrnaVigan11g021500_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan11g021500_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan11g021500_Va_Jingnong6_v1.1; organism=Vigna angularis; type=polypeptide; length=241bpback to top mRNA from alignment at Chr_11-CM003381.1:2380786..2381709- Legend: polypeptidestart_codonexonCDSintronstop_codon Hold the cursor over a type above to highlight its positions in the sequence below.>LR48_mrnaVigan11g021500_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan11g021500_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan11g021500; organism=Vigna angularis; type=mRNA; length=924bp; location=Sequence derived from: Chr_11-CM003381.1:2380786..2381709- (Vigna angularisback to top Coding sequence (CDS) from alignment at Chr_11-CM003381.1:2380786..2381709- >LR48_mrnaVigan11g021500_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan11g021500_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan11g021500; organism=Vigna angularis; type=CDS; length=726bp; location=Sequence derived from: Chr_11-CM003381.1:2380786..2381709- (Vigna angularisback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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