LR48_mrnaVigan11g028600

Transcript Overview
NameLR48_mrnaVigan11g028600
Unique NameLR48_mrnaVigan11g028600_Va_Jingnong6_v1.1
TypemRNA
OrganismVigna angularis (Adzuki bean, red mung bean, azuki)
Sequence length1240
Producthypothetical protein
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr_11-CM003381.1supercontigChr_11-CM003381.1:3347680..3348919 -Vigna angularis Jingnong 6 genome v1.1n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Vigna angularis Jingnong 6 genome v1.12020-05-19
InterProScan: Vigna angularis Jingnong 6 genome v1.12020-05-21
BLAST: V. angularis Jingnong 6 genome v1.12020-05-21
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
gene-LR48_Vigan11g028600gene-LR48_Vigan11g028600_Va_Jingnong6_v1.1Vigna angularisgene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
LR48_mrnaVigan11g028600LR48_mrnaVigan11g028600_Va_Jingnong6_v1.1-proteinVigna angularispolypeptide
LR48_mrnaVigan11g028600_Va_Jingnong6_v1.1LR48_mrnaVigan11g028600_Va_Jingnong6_v1.1Vigna angularispolypeptide


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
LR48_mrnaVigan11g028600_Va_Jingnong6_v1.1-start_codon-Chr_11-CM003381.1_Va_Jingnong6_v1.1-1589992784:3348917..3348919LR48_mrnaVigan11g028600_Va_Jingnong6_v1.1-start_codon-Chr_11-CM003381.1_Va_Jingnong6_v1.1-1589992784:3348917..3348919Vigna angularisstart_codon


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
LR48_mrnaVigan11g028600_Va_Jingnong6_v1.1-exon-Chr_11-CM003381.1_Va_Jingnong6_v1.1-1589992784:3347838..3348919LR48_mrnaVigan11g028600_Va_Jingnong6_v1.1-exon-Chr_11-CM003381.1_Va_Jingnong6_v1.1-1589992784:3347838..3348919Vigna angularisexon
LR48_mrnaVigan11g028600_Va_Jingnong6_v1.1-exon-Chr_11-CM003381.1_Va_Jingnong6_v1.1-1589992784:3347680..3347779LR48_mrnaVigan11g028600_Va_Jingnong6_v1.1-exon-Chr_11-CM003381.1_Va_Jingnong6_v1.1-1589992784:3347680..3347779Vigna angularisexon


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
LR48_mrnaVigan11g028600_Va_Jingnong6_v1.1-intron-Chr_11-CM003381.1_Va_Jingnong6_v1.1-1589992784:3347780..3347837LR48_mrnaVigan11g028600_Va_Jingnong6_v1.1-intron-Chr_11-CM003381.1_Va_Jingnong6_v1.1-1589992784:3347780..3347837Vigna angularisintron


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS13515CDS13515_Va_Jingnong6_v1.1Vigna angularisCDS


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
LR48_mrnaVigan11g028600_Va_Jingnong6_v1.1-stop_codon-Chr_11-CM003381.1_Va_Jingnong6_v1.1-1589992784:3347680..3347682LR48_mrnaVigan11g028600_Va_Jingnong6_v1.1-stop_codon-Chr_11-CM003381.1_Va_Jingnong6_v1.1-1589992784:3347680..3347682Vigna angularisstop_codon


Homology
The following BLAST results are available for this feature:
BLAST of LR48_mrnaVigan11g028600 vs.
Analysis Date: 2020-05-21 (BLAST: V. angularis Jingnong 6 genome v1.1)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan: Vigna angularis Jingnong 6 genome v1.1
Date Performed: 2020-05-21
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 367..393
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 354..393
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 281..318
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 302..316

Sequences
The following sequences are available for this feature:

mRNA sequence

>LR48_mrnaVigan11g028600_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan11g028600_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan11g028600; organism=Vigna angularis; type=mRNA; length=1240bp
ATGGCTTCTTCATCCGGATCCAAGAGAACTAAGACCACTGCTGGTCTCAG
GGAACATAGAAGGAAAGAGAAGATATACTCTGATATCTTCTTAACTAAGG
ACCATCAGAAGCATTTCTCCAATGTCCAGAACAGAAAACTTTTGATGGAG
AGGAAAGTGACCCTTCTACCTCAAGATGTGCCAGAATTCTCCAATGAGAT
TTTGGAGAGGCAAGGGAGCTCCTTATGCACGTACCCAGAGCCCGCCAATA
TTGCAATTGTCCAGGAGTTTTATGCCAATGCTAAATCCTTTTCTCCGGAC
TCAGAACCTTTCTGGAGCTATGTGCGTGGTCAGCGGATATCATTTAGTGC
TGACGCTATTAATGAGTTCTTAAACACAGAGTGGGAAGATGATGATGAGC
TATGCGGGTACGCCGAGCTGATGGCGATTGAGATAGACTATGAGGAGATT
GAGCAGGCCTTATGTATTACAGGAGGATCATTTCAACGAAATAGGCAGCA
GCAACCTCTTCATATCAAGAGAGTACACCTGCATTCTCTCAGCCGCCTAT
GGATGCCTCTGGTGCATTCCAACATTTCACCGTGCACGCATGTCTCTGAC
GTCACGGTTAACAGAGCGGTCCTCCTTTATGCCATTCTCACTGGACGCTC
TGTGAACTTGGGGAAGCTAATCGCAAATGAGATACGCAACTGTGCGACTT
CCACAAAAGCCCCCCTTGGATATCCCTCTCTTATCACCCATCTCTGCAAA
CAAGAAGGAGTGGACATCACTATTCCACCATTCGAGCATCCTAGGAAACC
TATTGATATGGGGTATTATACCCAATTTTGTTTGGATGCAGATGATGGAG
CTGCCAGTCCACCACCGAGATCGCCGAGGAGACATGCCAGACAGCGACCT
ATTCCCAGACGTCCTCAGCCACCACCACCACCACCTACGTCCGATCCTTA
CCAGATGATGGACATGAGACTTGGACTGATTGAATCAAAGTTGGAGGCGG
TGAACCGGATCGGTCAAGCCCATGCAGAGATGATGAGGCATGTTTACGCA
GCATCCCATCCAGGTTTTATGACATCCGACCAGTACAGCACCTTCGTTGC
TTGGCCTGGGGACCAGTCCTTTCCTTCTGGGGGGGGGTAGACCTCAGGCT
GGCACTGCTGCTATGGATGAGGATGACGATGATGACGAGGAGGAGGATGA
TGACGATGACGAGGTAGACGAGGACGAGGACTCAGACTGA
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protein sequence of LR48_mrnaVigan11g028600_Va_Jingnong6_v1.1

>LR48_mrnaVigan11g028600_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan11g028600_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan11g028600_Va_Jingnong6_v1.1; organism=Vigna angularis; type=polypeptide; length=393bp
MASSSGSKRTKTTAGLREHRRKEKIYSDIFLTKDHQKHFSNVQNRKLLME
RKVTLLPQDVPEFSNEILERQGSSLCTYPEPANIAIVQEFYANAKSFSPD
SEPFWSYVRGQRISFSADAINEFLNTEWEDDDELCGYAELMAIEIDYEEI
EQALCITGGSFQRNRQQQPLHIKRVHLHSLSRLWMPLVHSNISPCTHVSD
VTVNRAVLLYAILTGRSVNLGKLIANEIRNCATSTKAPLGYPSLITHLCK
QEGVDITIPPFEHPRKPIDMGYYTQFCLDADDGAASPPPRSPRRHARQRP
IPRRPQPPPPPPTSDPYQMMDMRLGLIESKLEAVNRIGQAHAEMMRHVYA
ASHPGFMTSDQPQAGTAAMDEDDDDDEEEDDDDDEVDEDEDSD
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mRNA from alignment at Chr_11-CM003381.1:3347680..3348919-

Legend: polypeptidestart_codonexonCDSintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>LR48_mrnaVigan11g028600_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan11g028600_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan11g028600; organism=Vigna angularis; type=mRNA; length=1240bp; location=Sequence derived from: Chr_11-CM003381.1:3347680..3348919- (Vigna angularis
ATGGCTTCTTCATCCGGATCCAAGAGAACTAAGACCACTGCTGGTCTCAG
GGAACATAGAAGGAAAGAGAAGATATACTCTGATATCTTCTTAACTAAGG
ACCATCAGAAGCATTTCTCCAATGTCCAGAACAGAAAACTTTTGATGGAG
AGGAAAGTGACCCTTCTACCTCAAGATGTGCCAGAATTCTCCAATGAGAT
TTTGGAGAGGCAAGGGAGCTCCTTATGCACGTACCCAGAGCCCGCCAATA
TTGCAATTGTCCAGGAGTTTTATGCCAATGCTAAATCCTTTTCTCCGGAC
TCAGAACCTTTCTGGAGCTATGTGCGTGGTCAGCGGATATCATTTAGTGC
TGACGCTATTAATGAGTTCTTAAACACAGAGTGGGAAGATGATGATGAGC
TATGCGGGTACGCCGAGCTGATGGCGATTGAGATAGACTATGAGGAGATT
GAGCAGGCCTTATGTATTACAGGAGGATCATTTCAACGAAATAGGCAGCA
GCAACCTCTTCATATCAAGAGAGTACACCTGCATTCTCTCAGCCGCCTAT
GGATGCCTCTGGTGCATTCCAACATTTCACCGTGCACGCATGTCTCTGAC
GTCACGGTTAACAGAGCGGTCCTCCTTTATGCCATTCTCACTGGACGCTC
TGTGAACTTGGGGAAGCTAATCGCAAATGAGATACGCAACTGTGCGACTT
CCACAAAAGCCCCCCTTGGATATCCCTCTCTTATCACCCATCTCTGCAAA
CAAGAAGGAGTGGACATCACTATTCCACCATTCGAGCATCCTAGGAAACC
TATTGATATGGGGTATTATACCCAATTTTGTTTGGATGCAGATGATGGAG
CTGCCAGTCCACCACCGAGATCGCCGAGGAGACATGCCAGACAGCGACCT
ATTCCCAGACGTCCTCAGCCACCACCACCACCACCTACGTCCGATCCTTA
CCAGATGATGGACATGAGACTTGGACTGATTGAATCAAAGTTGGAGGCGG
TGAACCGGATCGGTCAAGCCCATGCAGAGATGATGAGGCATGTTTACGCA
GCATCCCATCCAGGTTTTATGACATCCGACCAGTACAGCACCTTCGTTGC
TTGGCCTGGGGACCAGTCCTTTCCTTCTGGGGGGGGGTAGACCTCAGGCT
GGCACTGCTGCTATGGATGAGGATGACGATGATGACGAGGAGGAGGATGA
TGACGATGACGAGGTAGACGAGGACGAGGACTCAGACTGA
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Coding sequence (CDS) from alignment at Chr_11-CM003381.1:3347680..3348919-

>LR48_mrnaVigan11g028600_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan11g028600_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan11g028600; organism=Vigna angularis; type=CDS; length=1182bp; location=Sequence derived from: Chr_11-CM003381.1:3347680..3348919- (Vigna angularis
ATGGCTTCTTCATCCGGATCCAAGAGAACTAAGACCACTGCTGGTCTCAG
GGAACATAGAAGGAAAGAGAAGATATACTCTGATATCTTCTTAACTAAGG
ACCATCAGAAGCATTTCTCCAATGTCCAGAACAGAAAACTTTTGATGGAG
AGGAAAGTGACCCTTCTACCTCAAGATGTGCCAGAATTCTCCAATGAGAT
TTTGGAGAGGCAAGGGAGCTCCTTATGCACGTACCCAGAGCCCGCCAATA
TTGCAATTGTCCAGGAGTTTTATGCCAATGCTAAATCCTTTTCTCCGGAC
TCAGAACCTTTCTGGAGCTATGTGCGTGGTCAGCGGATATCATTTAGTGC
TGACGCTATTAATGAGTTCTTAAACACAGAGTGGGAAGATGATGATGAGC
TATGCGGGTACGCCGAGCTGATGGCGATTGAGATAGACTATGAGGAGATT
GAGCAGGCCTTATGTATTACAGGAGGATCATTTCAACGAAATAGGCAGCA
GCAACCTCTTCATATCAAGAGAGTACACCTGCATTCTCTCAGCCGCCTAT
GGATGCCTCTGGTGCATTCCAACATTTCACCGTGCACGCATGTCTCTGAC
GTCACGGTTAACAGAGCGGTCCTCCTTTATGCCATTCTCACTGGACGCTC
TGTGAACTTGGGGAAGCTAATCGCAAATGAGATACGCAACTGTGCGACTT
CCACAAAAGCCCCCCTTGGATATCCCTCTCTTATCACCCATCTCTGCAAA
CAAGAAGGAGTGGACATCACTATTCCACCATTCGAGCATCCTAGGAAACC
TATTGATATGGGGTATTATACCCAATTTTGTTTGGATGCAGATGATGGAG
CTGCCAGTCCACCACCGAGATCGCCGAGGAGACATGCCAGACAGCGACCT
ATTCCCAGACGTCCTCAGCCACCACCACCACCACCTACGTCCGATCCTTA
CCAGATGATGGACATGAGACTTGGACTGATTGAATCAAAGTTGGAGGCGG
TGAACCGGATCGGTCAAGCCCATGCAGAGATGATGAGGCATGTTTACGCA
GCATCCCATCCAGGTTTTATGACATCCGACCAACCTCAGGCTGGCACTGC
TGCTATGGATGAGGATGACGATGATGACGAGGAGGAGGATGATGACGATG
ACGAGGTAGACGAGGACGAGGACTCAGACTGA
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