LR48_mrnaVigan11g040300
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following start_codon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
Homology
BLAST of LR48_mrnaVigan11g040300 vs. DB:Swiss
Match: PUB4_ARATH (U-box domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=PUB4 PE=1 SV=3) HSP 1 Score: 74.3294 bits (181), Expect = 1.576e-12 Identity = 84/322 (26.09%), Postives = 146/322 (45.34%), Query Frame = 1 Query: 469 IRELLARLQIGHLEAKHKALDRLYDVMKEDEKNVLAVLGRRNVAALVQLLTATSPRIREKTVTVICSLVESGSCEKWLVSEGVLPPLIRLVESGSAVSKEKAIVSLQRLSMSAETTRAIVGHGGVRPLIELCESGDSVSQAAAACTLTNISAVPEVRQALAEEGIVSVMINLLSCGILLGSKEYAAECLQNLTSSNEHLRKCVISEGGVRSLLTYLDGPLPQESAVGALRNLVGSVSEETLVSLGLLPCLVHVLKSGSL-GXXXXXXSVICRVCSSMEMKKMVGEAGCIPLLIKMLEAKTNTAREIAAQAISSLMVLSQNRR 1431 +++L+ L+ L+ + +A L + K + N + + + LV+LL +T +E VT + +L + + +K + G + PLI ++E+GS+ +KE + +L LS+ E I G + PL++L +G + AA L N+S E + + + G V +I+L+ G + A L NL I EG RN +G G +P LV V++ GS G + AAA+++ +S MV + G +P L+ + ++ T ARE AQA+ S +N+R Sbjct: 543 VKKLVEELKSSSLDTQRQATAELRLLAKHNMDNRIVIGNSGAIVLLVELLYSTDSATQENAVTALLNLSINDNNKKAIADAGAIEPLIHVLENGSSEAKENSAATLFSLSVIEENKIKIGQSGAIGPLVDLLGNGTPRGKKDAATALFNLSIHQENKAMIVQSGAVRYLIDLMDPAA--GMVDKAVAVLANL---------ATIPEG----------------------RNAIGQE--------GGIPLLVEVVELGSARGKENAAAALLQLSTNSGRFCNMVLQEGAVPPLVALSQSGTPRARE-KAQALLSYF---RNQR 819
BLAST of LR48_mrnaVigan11g040300 vs. DB:Swiss
Match: PUB12_ARATH (U-box domain-containing protein 12 OS=Arabidopsis thaliana OX=3702 GN=PUB12 PE=2 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 1.860e-10 Identity = 82/334 (24.55%), Postives = 143/334 (42.81%), Query Frame = 1 Query: 460 HNNIRELLARLQIGHLEAKHKALDRLYDVMKEDEKNVLAVLGRRNVAALVQLLT-ATSPRIREKTVTVICSLVESGSCE----KWLVSEGVLPPLIRLVESGSAVSKEKAIVSLQRLSMSAETTRAIVGHGGVRPLIELCESGDSVSQAAAACTLTNISAVPEVRQALAEEGIVSVMINLLS---CGILLGSKEYAAECLQNLTSSNEHLRKCVISEGGVRSLLTYLDGPLPQESAVGALRNLVGSVSEETLVSLGLLPCLVHVLKSGSLGXXXXXXSVICRVCSSMEMKKMVGEA-GCIPLLIKMLEAKTNTAREIAAQAISSLMVLSQNRRE 1434 HN I ELL +L E + A + + K++ N +A+ + LV LLT + R +E VT I +L C+ K + S G +P ++ +++ GS ++E A +L LS+ E I G + PL+ L G + AA L N+ + G+V V++ LL+ G++ +E L I L ++ DG +S VGA +P LV ++SGS ++ +A+V+ +CS + + + G + LLI+M E T+ + AAQ ++ + +++ Sbjct: 354 HNKIEELLLKLTSQQPEDRRSAAGEIRLLAKQNNHNRVAIAASGAIPLLVNLLTISNDSRTQEHAVTSILNL---SICQENKGKIVYSSGAVPGIVHVLQKGSMEARENAAATLFSLSVIDENKVTIGAAGAIPPLVTLLSEGSQRGKKDAATALFNLCIFQGNKGKAVRAGLVPVLMRLLTEPESGMV-----------------DESLSILAI-------LSSHPDG----KSEVGA---------------ADAVPVLVDFIRSGSPRNKENSAAVLVHLCSWNQQHLIEAQKLGIMDLLIEMAENGTDRGKRKAAQLLNRFSRFNDQQKQ 641
BLAST of LR48_mrnaVigan11g040300 vs. DB:Swiss
Match: VAC8_KLULA (Vacuolar protein 8 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) OX=284590 GN=VAC8 PE=3 SV=3) HSP 1 Score: 65.4698 bits (158), Expect = 6.969e-10 Identity = 75/287 (26.13%), Postives = 137/287 (47.74%), Query Frame = 1 Query: 604 LVQLLTATSPRIREKTVTVICSLVESGSCEKWLVSEGVLPPLIRLVESGSAVSKEKAIVSLQRLSMSAETTRAIVGHGGVRPLIELCESGDSVSQAAAACTLTNISAVPEVRQALAEEGIVSVMINLLSCGILLGSKEYAAECLQNLTSSNEHLRKCVISEGG--VRSLLTYLDGPLPQE--SAVGALRNLVGSVSEE-TLVSLGLLPCLVHVLKSGSLGXXXXXXSVICRVCSSMEMKKMVGEAGCIPLLIKMLEAKTNTAREIAAQAISSLMVLS----QNRREV 1437 ++ LLT P+IR + + +L + + +V G L PLI ++S + + A+ + L+ + I G + PL +L S + Q A L N++ E R+ L + G V V+++LLS + + Y L N+ + +E R+ + V L++ ++ P+ A ALRNL + + +V G LP LV +++S SL A+ + I + + ++ +AG +P L+K+L+ + + EI A+S+L L+ +NR E Sbjct: 92 ILMLLTNPDPQIRIASCAALGNLAVNNENKLLIVEMGGLEPLIEQMKSDNVEVQCNAVGCITNLATQDDNKIEIAQSGALVPLTKLARSSNIRVQRNATGALLNMTHSGENRKELVDAGAVPVLVSLLS-SMDADVQYYCTTALSNI-AVDESNRRYLSKHAPKLVTKLVSLMNSTSPRVKCQATLALRNLASDTNYQLEIVRAGGLPDLVQLIQSDSLPLVLASVACIRNISIHPLNEGLIVDAGFLPPLVKLLDYQ--ESEEIQCHAVSTLRNLAASSEKNRAEF 374
BLAST of LR48_mrnaVigan11g040300 vs. DB:Swiss
Match: VAC8_CANGA (Vacuolar protein 8 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) OX=284593 GN=VAC8 PE=3 SV=3) HSP 1 Score: 64.6994 bits (156), Expect = 1.149e-9 Identity = 73/283 (25.80%), Postives = 131/283 (46.29%), Query Frame = 1 Query: 613 LLTATSPRIREKTVTVICSLVESGSCEKWLVSEGVLPPLIRLVESGSAVSKEKAIVSLQRLSMSAETTRAIVGHGGVRPLIELCESGDSVSQAAAACTLTNISAVPEVRQALAEEGIVSVMINLLSCGILLGSKEYAAECLQNLTSSNEHLRKCVISEGG-VRSLLTYLDGPLPQE--SAVGALRNLVGSVSEE-TLVSLGLLPCLVHVLKSGSLGXXXXXXSVICRVCSSMEMKKMVGEAGCIPLLIKMLEAKTNTAREIAAQAISSLMVLS----QNRREV 1437 LL + P+I+ + +L + + +V G L PLI + + + A+ + L+ + I G + PL +L +S Q A L N++ E R+ L G V V+++LLS + Y L N+ + +K +E V L++ +D P + A ALRNL S + +V G LP LV++++S S+ A+ + I + + ++ +AG +P L+K+L+ + + EI A+S+L L+ +NR+E Sbjct: 93 LLQSQDPQIQVAACAALGNLAVNNENKLLIVDMGGLEPLINQMMGTNVEVQCNAVGCITNLATRDDNKHKIATSGALVPLTKLAKSKHIRVQRNATGALLNMTHSEENRRELVNAGAVPVLVSLLSSND-PDVQYYCTTALSNIAVDEANRKKLAQTEPRLVSKLVSLMDSPSSRVKCQATLALRNLASDTSYQLEIVRAGGLPHLVNLIQSESVPLILASVACIRNISIHPLNEGLIVDAGFLPPLVKLLDYR--DSEEIQCHAVSTLRNLAASSEKNRKEF 372
BLAST of LR48_mrnaVigan11g040300 vs. DB:Swiss
Match: PUB13_ARATH (U-box domain-containing protein 13 OS=Arabidopsis thaliana OX=3702 GN=PUB13 PE=1 SV=1) HSP 1 Score: 61.6178 bits (148), Expect = 1.344e-8 Identity = 48/182 (26.37%), Postives = 86/182 (47.25%), Query Frame = 1 Query: 445 SDIATHNNIRELLARLQIGHLEAKHKALDRLYDVMKEDEKNVLAVLGRRNVAALVQLLTATSPRIREKTVTVICSLVESGSCEKWLVSEGVLPPLIRLVESGSAVSKEKAIVSLQRLSMSAETTRAIVGHGGVRPLIELCESGDSVSQAAAACTLTNISAVPEVRQALAEEGIVSVMINLLS 990 S A N I +L+ RL G+ E + A + + K + N +A+ + LV LL+ RI+E +VT + +L + + +VS G +P ++++++ GS ++E A +L LS+ E I G + PL+ L G + AA L N+ + G++ + LL+ Sbjct: 346 SSPAEANKIEDLMWRLAYGNPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRIQEHSVTALLNLSICENNKGAIVSAGAIPGIVQVLKKGSMEARENAAATLFSLSVIDENKVTIGALGAIPPLVVLLNEGTQRGKKDAATALFNLCIYQGNKGKAIRAGVIPTLTRLLT 527
BLAST of LR48_mrnaVigan11g040300 vs. DB:Swiss
Match: VAC8_YEAST (Vacuolar protein 8 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=VAC8 PE=1 SV=3) HSP 1 Score: 60.8474 bits (146), Expect = 1.944e-8 Identity = 72/283 (25.44%), Postives = 129/283 (45.58%), Query Frame = 1 Query: 613 LLTATSPRIREKTVTVICSLVESGSCEKWLVSEGVLPPLIRLVESGSAVSKEKAIVSLQRLSMSAETTRAIVGHGGVRPLIELCESGDSVSQAAAACTLTNISAVPEVRQALAEEGIVSVMINLLSCGILLGSKEYAAECLQNLTSSNEHLRKCVISEGG-VRSLLTYLDGPLPQE--SAVGALRNLVGSVSEE-TLVSLGLLPCLVHVLKSGSLGXXXXXXSVICRVCSSMEMKKMVGEAGCIPLLIKMLEAKTNTAREIAAQAISSLMVLS----QNRREV 1437 LL + P+I+ + +L + + +V G L PLI + + + A+ + L+ + I G + PL +L +S Q A L N++ E R+ L G V V+++LLS + Y L N+ + +K +E V L++ +D P + A ALRNL S + +V G LP LV +++S S+ A+ + I + + ++ +AG + L+++L+ K + EI A+S+L L+ +NR+E Sbjct: 93 LLQSQDPQIQVAACAALGNLAVNNENKLLIVEMGGLEPLINQMMGDNVEVQCNAVGCITNLATRDDNKHKIATSGALIPLTKLAKSKHIRVQRNATGALLNMTHSEENRKELVNAGAVPVLVSLLS-STDPDVQYYCTTALSNIAVDEANRKKLAQTEPRLVSKLVSLMDSPSSRVKCQATLALRNLASDTSYQLEIVRAGGLPHLVKLIQSDSIPLVLASVACIRNISIHPLNEGLIVDAGFLKPLVRLLDYK--DSEEIQCHAVSTLRNLAASSEKNRKEF 372 HSP 2 Score: 57.3806 bits (137), Expect = 2.208e-7 Identity = 86/342 (25.15%), Postives = 157/342 (45.91%), Query Frame = 1 Query: 502 HLEAKHKALDRLYDVMKEDEKNVLAVLGRRNVAALVQLLTATSPRIREKTVTVICSL-VESGSCEKWLVSEG-VLPPLIRLVESGSAVSKEKAIVSLQRLSMSAETTRAIVGHGGVRPLIELCESGDSVS--QAAAACTLTNISAVPEVRQALAEEGIVSVMINLLSCGILLGSKEYAAECLQNLTSSNEHLRKCVISEGGVRSLLTY-LDGPLPQESAVGALRNL--VGSVSEETLVSLGLLPCLVHVLKSGSLGXXXXXXSVICRVCSSMEMKKMVGEAGCIP------LLIKMLEAKTNTAREIAAQAISSLMVLSQNRRE--VKKDDKSVPNLVQLLD 1482 H+ + A L + M E+N ++ V LV LL++T P ++ T + ++ V+ + +K +E ++ L+ L++S S+ K +A ++L+ L+ IV GG+ L++L +S DS+ A+ AC + NIS P + + G + ++ LL + +A L+NL +S+E RK G V LD P+ +S + A + + VS+ L+ +L L+ + S + AA+ + +CS + + EA P LI+ L++ T IA I L+ ++ E VK DD + + ++ D Sbjct: 180 HIRVQRNATGALLN-MTHSEENRKELVNAGAVPVLVSLLSSTDPDVQYYCTTALSNIAVDEANRKKLAQTEPRLVSKLVSLMDSPSSRVKCQATLALRNLASDTSYQLEIVRAGGLPHLVKLIQS-DSIPLVLASVAC-IRNISIHPLNEGLIVDAGFLKPLVRLLDYKDSEEIQCHAVSTLRNLAASSEKNRKEFFESGAVEKCKELALDSPVSVQSEISACFAILALADVSKLDLLEANILDALIPMTFSQNQEVSGNAAAALANLCSRVNNYTKIIEAWDRPNEGIRGFLIRFLKSDYATFEHIALWTILQLLESHNDKVEDLVKNDDDIINGVRKMAD 518
BLAST of LR48_mrnaVigan11g040300 vs. DB:Swiss
Match: PUB40_ARATH (U-box domain-containing protein 40 OS=Arabidopsis thaliana OX=3702 GN=PUB40 PE=2 SV=2) HSP 1 Score: 60.4622 bits (145), Expect = 2.523e-8 Identity = 44/177 (24.86%), Postives = 92/177 (51.98%), Query Frame = 1 Query: 478 LLARLQIGHLEAKHKALDRLYDVMKEDEKNVLAVLGRRNVAALVQLLTATSPRIREKTVTVICSLVESGSCEKWLVSEGVLPPLIRLVESGSAVSKEKAIVSLQRLSMSAETTRAIVGHGGVRPLIELCESGDSVSQAAAACTLTNISAVPEVRQALAEEGIVSVMINLLSCGILLG 1008 LL +L+ + +AL + + + DE + +++ R ++AL L+ + ++ V+ +L S + +V G++PPLI +++ GS ++E + + L++ E AI GG+ PL+ L G +++ +A L ++S V R L + G V +++ ++S G ++G Sbjct: 233 LLTKLKSNRISEIEEALISIRRITRIDESSRISLCTTRVISALKSLIVSRYATVQVNVTAVLVNLSLEKSNKVKIVRSGIVPPLIDVLKCGSVEAQEHSAGVIFSLALEDENKTAIGVLGGLEPLLHLIRVGTELTRHDSALALYHLSLVQSNRGKLVKLGAVQMLLGMVSLGQMIG 409
BLAST of LR48_mrnaVigan11g040300 vs. DB:Swiss
Match: PUB12_ORYSJ (U-box domain-containing protein 12 OS=Oryza sativa subsp. japonica OX=39947 GN=PUB12 PE=2 SV=1) HSP 1 Score: 59.3066 bits (142), Expect = 7.207e-8 Identity = 62/244 (25.41%), Postives = 117/244 (47.95%), Query Frame = 1 Query: 712 GVLPPLIRLVESGSAVSKEKAIVSLQRLSMSAETTRAIVGHGGVRPLIELCESGDSVSQAAAACTLTNISAVPEVRQALAEEGIVSVMINLLSCGILLGSKEYAAECLQNLTSSNEHLRKCVISEGGVRSLLTYLDGPLPQ--ESAVGALRNLVGSVSEETLVSLG-LLPCLVHVLKSGSLGXXXXXXSVICRVCSSMEMKKMVGEAGCIPLLIKMLEAKTNTAREIAAQAISSLMVLSQNRRE 1434 G +P L+ L+ S ++E A+ +L LS+ +IV + ++E+ ++G ++ AA TL ++S V E + + G + +INLL G G K+ A +R + G V L+ +L P + A+ L L G+ + +++ +P LV V+K+GS ++ AA+++ +CS+ + + +A + +K L ++T T R A + SS++ L E Sbjct: 365 GAIPLLVNLLSSSDPRTQEHAVTALLNLSIHENNKASIVDSHAIPKIVEVLKTGSMETRENAAATLFSLSVVDENKVTIGAAGAIPPLINLLCDGSPRGKKDAATAIFNLCIYQGNKVR--AVKAGIVIHLMNFLVDPTGGMIDEALSLLSILAGNPEGKIVIARSEPIPPLVEVIKTGSPRNRENAAAILWLLCSADTEQTLAAKAAGVEDALKEL-SETGTDR--AKRKASSILELMHQANE 603 HSP 2 Score: 57.7658 bits (138), Expect = 2.110e-7 Identity = 45/183 (24.59%), Postives = 86/183 (46.99%), Query Frame = 1 Query: 439 AESDIATHNNIRELLARLQIGHLEAKHKALDRLYDVMKEDEKNVLAVLGRRNVAALVQLLTATSPRIREKTVTVICSLVESGSCEKWLVSEGVLPPLIRLVESGSAVSKEKAIVSLQRLSMSAETTRAIVGHGGVRPLIELCESGDSVSQAAAACTLTNISAVPEVRQALAEEGIVSVMINLL 987 A+S H + L+ RL+ G+ + + A + + K + N + + + LV LL+++ PR +E VT + +L + + +V +P ++ ++++GS ++E A +L LS+ E I G + PLI L G + AA + N+ + + GIV ++N L Sbjct: 315 AKSSDYDHAGLVSLMNRLRSGNQDEQRAAAGEIRLLAKRNVNNRICIAEAGAIPLLVNLLSSSDPRTQEHAVTALLNLSIHENNKASIVDSHAIPKIVEVLKTGSMETRENAAATLFSLSVVDENKVTIGAAGAIPPLINLLCDGSPRGKKDAATAIFNLCIYQGNKVRAVKAGIVIHLMNFL 497
BLAST of LR48_mrnaVigan11g040300 vs. DB:Swiss
Match: PUB2_ARATH (U-box domain-containing protein 2 OS=Arabidopsis thaliana OX=3702 GN=PUB2 PE=2 SV=1) HSP 1 Score: 57.7658 bits (138), Expect = 1.943e-7 Identity = 57/228 (25.00%), Postives = 100/228 (43.86%), Query Frame = 1 Query: 718 LPPLIRLVESGSAVSKEKAIVSLQRLSMSAETTRAIVGHGGVRPLIELCESGD-SVSQAAAACTLTNISAVPEVRQALAEEGIVSVMINLLSCGILLGSKEYAAECLQNLTSSNEHLRKCVISEGGVRSLLTYLDGPLPQESAVGALRNLVGSVSEETLVSLGLLPCLVHVLKSGSLGXXXXXXSVICRVCSSMEMKKMVGEAGCIPLLIKMLEAKTNTAREIAAQAI 1398 +P L+ L+ S + A+ L LS++ I G + PLI + ++G ++A +A TL ++S + E + + E G + +++LL G L G K+ AA L NL+ +E+ K VI G VR L+ +D + G + A V+ + + E K +GE G IP+L++++E + +E A A+ Sbjct: 465 IPSLVSLLYSTDERIQADAVTCLLNLSINDNNKSLIAESGAIVPLIHVLKTGYLEEAKANSAATLFSLSVIEEYKTEIGEAGAIEPLVDLLGSGSLSGKKD-AATALFNLSIHHENKTK-VIEAGAVRYLVELMDP---------------------------------------AFGMVEKAVVVLANLATVREGKIAIGEEGGIPVLVEVVELGSARGKENATAAL 651 HSP 2 Score: 55.8398 bits (133), Expect = 7.798e-7 Identity = 67/274 (24.45%), Postives = 118/274 (43.07%), Query Frame = 1 Query: 412 LPLTVLGSMAESDIATHNNIRELLARLQIGHLEAKHKALDRLYDVMKEDEKNVLAVLGRRNVAALVQLLTATSPRIREKTVTVICSL----------VESGSC-----------------------------EKW---LVSEGVLPPLIRLVESGSAVSKEKAIVSLQRLSMSAETTRAIVGHGGVRPLIELCESGDSVSQAAAACTLTNISAVPEVRQALAEEGIVSVMINLLSCGILLGSKEYAAECLQNLTSSNEHLRKCVISEGGVRSLL 1107 +P TV + + S I T +++L+ L+ L+ + +A R+ + + N + + + +LV LL +T RI+ VT + +L ESG+ E++ + G + PL+ L+ SGS K+ A +L LS+ E ++ G VR L+EL + + + A L N++ V E + A+ EEG + V++ ++ G G KE A L L + + VI EG + L+ Sbjct: 406 IPATVRETGSSSSIETE--VKKLIDDLKSSSLDTQREATARIRILARNSTDNRIVIARCEAIPSLVSLLYSTDERIQADAVTCLLNLSINDNNKSLIAESGAIVPLIHVLKTGYLEEAKANSAATLFSLSVIEEYKTEIGEAGAIEPLVDLLGSGSLSGKKDAATALFNLSIHHENKTKVIEAGAVRYLVELMDPAFGMVE-KAVVVLANLATVREGKIAIGEEGGIPVLVEVVELGSARG-KENATAALLQLCTHSPKFCNNVIREGVIPPLV 675
BLAST of LR48_mrnaVigan11g040300 vs. DB:Swiss
Match: VAC8_ASHGO (Vacuolar protein 8 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) OX=284811 GN=VAC8 PE=3 SV=3) HSP 1 Score: 56.9954 bits (136), Expect = 3.172e-7 Identity = 73/283 (25.80%), Postives = 128/283 (45.23%), Query Frame = 1 Query: 613 LLTATSPRIREKTVTVICSLVESGSCEKWLVSEGVLPPLIRLVESGSAVSKEKAIVSLQRLSMSAETTRAIVGHGGVRPLIELCESGDSVSQAAAACTLTNISAVPEVRQALAEEGIVSVMINLLSCGILLGSKEYAAECLQNLTSSNEHLRKCVISEGGVRSLLTYL-DGPLPQE--SAVGALRNLVGSVSEE-TLVSLGLLPCLVHVLKSGSLGXXXXXXSVICRVCSSMEMKKMVGEAGCIPLLIKMLEAKTNTAREIAAQAISSLMVLS----QNRREV 1437 LL + P+I+ + +L + + +V G L PLI ++S + + A+ + L+ + I G + PL +L +S + Q A L N++ E R+ L + G V V+++LLS + Y L N+ + RK +E + S L L D P + A ALRNL + +V G L LV +++ S+ A+ + I + + ++ +AG + L+K+L+ N EI A+S+L L+ +NR+E Sbjct: 93 LLQSHDPQIQIAACAALGNLAVNNENKILIVEMGGLEPLIEQMKSNNVEVQCNAVGCITNLATQDDNKAKIAHSGALVPLTKLAKSKNIRVQRNATGALLNMTHSGENRKELVDAGAVPVLVSLLSSSD-ADVQYYCTTALSNIAVDESNRRKLSQTEPRLVSKLVVLTDSPSARVKCQATLALRNLASDTGYQLEIVRAGGLSHLVKLIQCNSMPLVLASVACIRNISIHPLNEGLIVDAGFLKPLVKLLDYNDN--EEIQCHAVSTLRNLAASSEKNRQEF 372 The following BLAST results are available for this feature:
BLAST of LR48_mrnaVigan11g040300 vs. DB:Swiss
Analysis Date: 2020-05-21 (BLAST: V. angularis Jingnong 6 genome v1.1) Total hits: 10
InterPro
Analysis Name: InterProScan: Vigna angularis Jingnong 6 genome v1.1
Date Performed: 2020-05-21
Sequences
The
following sequences are available for this feature:
mRNA sequence >LR48_mrnaVigan11g040300_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan11g040300_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan11g040300; organism=Vigna angularis; type=mRNA; length=1686bpback to top protein sequence of LR48_mrnaVigan11g040300_Va_Jingnong6_v1.1 >LR48_mrnaVigan11g040300_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan11g040300_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan11g040300_Va_Jingnong6_v1.1; organism=Vigna angularis; type=polypeptide; length=561bpback to top mRNA from alignment at Chr_11-CM003381.1:5006087..5007772- Legend: polypeptideCDSexonstart_codonstop_codon Hold the cursor over a type above to highlight its positions in the sequence below.>LR48_mrnaVigan11g040300_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan11g040300_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan11g040300; organism=Vigna angularis; type=mRNA; length=1686bp; location=Sequence derived from: Chr_11-CM003381.1:5006087..5007772- (Vigna angularisback to top Coding sequence (CDS) from alignment at Chr_11-CM003381.1:5006087..5007772- >LR48_mrnaVigan11g040300_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan11g040300_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan11g040300; organism=Vigna angularis; type=CDS; length=1686bp; location=Sequence derived from: Chr_11-CM003381.1:5006087..5007772- (Vigna angularisback to top |