LR48_mrnaVigan10g014700

Transcript Overview
NameLR48_mrnaVigan10g014700
Unique NameLR48_mrnaVigan10g014700_Va_Jingnong6_v1.1
TypemRNA
OrganismVigna angularis (Adzuki bean, red mung bean, azuki)
Sequence length894
Producthypothetical protein
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr_10-CM003380.1supercontigChr_10-CM003380.1:1151939..1152832 +Vigna angularis Jingnong 6 genome v1.1n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Vigna angularis Jingnong 6 genome v1.12020-05-19
InterProScan: Vigna angularis Jingnong 6 genome v1.12020-05-21
BLAST: V. angularis Jingnong 6 genome v1.12020-05-21
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
ascaR235Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ascaR284Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ascaR292Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ascaR310Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
asasR127Vigna angularis Jingnong 6 genome v1.1Vigna angularis
asasR145Vigna angularis Jingnong 6 genome v1.1Vigna angularis
ascaiR364Cicer arietinum ICC 4958 genome v2Cicer arietinum
ascaiR370Cicer arietinum ICC 4958 genome v2Cicer arietinum
ascaiR380Cicer arietinum ICC 4958 genome v2Cicer arietinum
asccR0395Cajanus cajan Asha genome v1.0Cajanus cajan
asccR0426Cajanus cajan Asha genome v1.0Cajanus cajan
asccR0467Cajanus cajan Asha genome v1.0Cajanus cajan
ascrR293Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
ascrR333Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
ascrR346Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
aspsR265Pisum sativum Cameor genome v1aPisum sativum
aspsR290Pisum sativum Cameor genome v1aPisum sativum
aspsR292Pisum sativum Cameor genome v1aPisum sativum
aspsR305Pisum sativum Cameor genome v1aPisum sativum
aspvR263Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
aspvR265Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
aspvR294Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
asvuR220Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
asvuR225Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
asvuR259Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
asvuR278Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
astifR250Vicia faba cv. Tiffany genome v1.0Vicia faba
astifR313Vicia faba cv. Tiffany genome v1.0Vicia faba
astifR314Vicia faba cv. Tiffany genome v1.0Vicia faba
asvfhR258Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
asvfhR322Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
asvfhR323Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
asvrvR200Vigna radiata cv. VC1973A genome v6.0Vigna radiata
asvrvR240Vigna radiata cv. VC1973A genome v6.0Vigna radiata
asvrvR241Vigna radiata cv. VC1973A genome v6.0Vigna radiata
asvrvR248Vigna radiata cv. VC1973A genome v6.0Vigna radiata
asvssR264Vicia sativa cv. Studenica genome v1.0Vicia sativa
asvssR311Vicia sativa cv. Studenica genome v1.0Vicia sativa
asvssR316Vicia sativa cv. Studenica genome v1.0Vicia sativa
asvssR322Vicia sativa cv. Studenica genome v1.0Vicia sativa
asvuaR202Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
asvuaR207Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
asvuaR259Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
ascanR217Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
ascanR254Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
ascanR263Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
ascanR277Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
gene-LR48_Vigan10g014700gene-LR48_Vigan10g014700_Va_Jingnong6_v1.1Vigna angularisgene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
LR48_mrnaVigan10g014700LR48_mrnaVigan10g014700_Va_Jingnong6_v1.1-proteinVigna angularispolypeptide
LR48_mrnaVigan10g014700_Va_Jingnong6_v1.1LR48_mrnaVigan10g014700_Va_Jingnong6_v1.1Vigna angularispolypeptide


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
LR48_mrnaVigan10g014700_Va_Jingnong6_v1.1-start_codon-Chr_10-CM003380.1_Va_Jingnong6_v1.1-1589992784:1151939..1151941LR48_mrnaVigan10g014700_Va_Jingnong6_v1.1-start_codon-Chr_10-CM003380.1_Va_Jingnong6_v1.1-1589992784:1151939..1151941Vigna angularisstart_codon


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
LR48_mrnaVigan10g014700_Va_Jingnong6_v1.1-exon-Chr_10-CM003380.1_Va_Jingnong6_v1.1-1589992784:1151939..1152832LR48_mrnaVigan10g014700_Va_Jingnong6_v1.1-exon-Chr_10-CM003380.1_Va_Jingnong6_v1.1-1589992784:1151939..1152832Vigna angularisexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
LR48_mrnaVigan10g014700_Va_Jingnong6_v1.1-CDS-Chr_10-CM003380.1_Va_Jingnong6_v1.1-1589992784:1151939..1152832LR48_mrnaVigan10g014700_Va_Jingnong6_v1.1-CDS-Chr_10-CM003380.1_Va_Jingnong6_v1.1-1589992784:1151939..1152832Vigna angularisCDS


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
LR48_mrnaVigan10g014700_Va_Jingnong6_v1.1-stop_codon-Chr_10-CM003380.1_Va_Jingnong6_v1.1-1589992784:1152830..1152832LR48_mrnaVigan10g014700_Va_Jingnong6_v1.1-stop_codon-Chr_10-CM003380.1_Va_Jingnong6_v1.1-1589992784:1152830..1152832Vigna angularisstop_codon


Homology
The following BLAST results are available for this feature:
BLAST of LR48_mrnaVigan10g014700 vs.
Analysis Date: 2020-05-21 (BLAST: V. angularis Jingnong 6 genome v1.1)
Total hits: 0
Match NameE-valueIdentityDescription
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Sequences
The following sequences are available for this feature:

mRNA sequence

>LR48_mrnaVigan10g014700_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan10g014700_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan10g014700; organism=Vigna angularis; type=mRNA; length=894bp
ATGGGAAACAACAACGGTGCATGTTTTCTCCGTCTAAGAGGGAGTCTTCC
ATTTCCATCCAATATTCAACTGGGAACAGATGCTACCATCAACATGAAGT
CATATATCACTCACTCTGATGATGGAACATCAGCCGAAAATGCACAAGTT
TTATACACCGTTGAAGGGTCAAATTGCAAACTCGTGTTAAGAAGGGTTGT
TTGCAACGGCAATGTCAACGCTCTAGGGTTCGTACTCCATGACAGCGTAA
TATGTTCAGGCCAAAAAAAACTAAGCTTTTCGATATTCAAAGATGGAACT
GATTTCCTTAACGTGTTCCATTCGGATAAGTATTCCAACTTGTGGACGAA
GACTAGGAAGAACTTCGATGCATGGGATGGTGTTACGGACACCAAAGTTT
GCTTGTATGGCACTGCAAACAGGTGTGGTCTTCTTGTTTTGGAGTGCAAA
AACGATTGTCCTTATCAACGTGATGCTAAGGCAGTGACTATAGCACACTA
TTTTGTTAGCAGTAACGGATCAGTGGCTGTTAACAGATCAAGTGAATCAA
CAGATATTGGGTTTTCTGTTGTGACAAAGGTTCGAAGGTGTGATGGAAAG
TATGAAATAATAGTGGAGGGTCCTGAACCACACCCTGTTTTTGCATTATT
ACACATGTTTGATGAAGTGAATAGAAGTGGGATTTGGAAGCCAACCATGT
GCCCTCATTGTCGTAACATTCAGAGGGAGCATAGCACAATGTTTCTGCCG
TCTGATAGTGAAGACGATGTTGTTCCCTTACCGCCACGTCTTGGTAACCA
ACGAAATGCAGCGACCATTGCCAACGATGGAAGGTTCAGAGGGCATGCTA
ATGGTAGTTACATCAGATGCAGAAATTTCTATGGTTTTAATTGA
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protein sequence of LR48_mrnaVigan10g014700_Va_Jingnong6_v1.1

>LR48_mrnaVigan10g014700_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan10g014700_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan10g014700_Va_Jingnong6_v1.1; organism=Vigna angularis; type=polypeptide; length=297bp
MGNNNGACFLRLRGSLPFPSNIQLGTDATINMKSYITHSDDGTSAENAQV
LYTVEGSNCKLVLRRVVCNGNVNALGFVLHDSVICSGQKKLSFSIFKDGT
DFLNVFHSDKYSNLWTKTRKNFDAWDGVTDTKVCLYGTANRCGLLVLECK
NDCPYQRDAKAVTIAHYFVSSNGSVAVNRSSESTDIGFSVVTKVRRCDGK
YEIIVEGPEPHPVFALLHMFDEVNRSGIWKPTMCPHCRNIQREHSTMFLP
SDSEDDVVPLPPRLGNQRNAATIANDGRFRGHANGSYIRCRNFYGFN
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mRNA from alignment at Chr_10-CM003380.1:1151939..1152832+

Legend: polypeptidestart_codonexonCDSstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>LR48_mrnaVigan10g014700_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan10g014700_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan10g014700; organism=Vigna angularis; type=mRNA; length=894bp; location=Sequence derived from: Chr_10-CM003380.1:1151939..1152832+ (Vigna angularis
ATGGGAAACAACAACGGTGCATGTTTTCTCCGTCTAAGAGGGAGTCTTCC
ATTTCCATCCAATATTCAACTGGGAACAGATGCTACCATCAACATGAAGT
CATATATCACTCACTCTGATGATGGAACATCAGCCGAAAATGCACAAGTT
TTATACACCGTTGAAGGGTCAAATTGCAAACTCGTGTTAAGAAGGGTTGT
TTGCAACGGCAATGTCAACGCTCTAGGGTTCGTACTCCATGACAGCGTAA
TATGTTCAGGCCAAAAAAAACTAAGCTTTTCGATATTCAAAGATGGAACT
GATTTCCTTAACGTGTTCCATTCGGATAAGTATTCCAACTTGTGGACGAA
GACTAGGAAGAACTTCGATGCATGGGATGGTGTTACGGACACCAAAGTTT
GCTTGTATGGCACTGCAAACAGGTGTGGTCTTCTTGTTTTGGAGTGCAAA
AACGATTGTCCTTATCAACGTGATGCTAAGGCAGTGACTATAGCACACTA
TTTTGTTAGCAGTAACGGATCAGTGGCTGTTAACAGATCAAGTGAATCAA
CAGATATTGGGTTTTCTGTTGTGACAAAGGTTCGAAGGTGTGATGGAAAG
TATGAAATAATAGTGGAGGGTCCTGAACCACACCCTGTTTTTGCATTATT
ACACATGTTTGATGAAGTGAATAGAAGTGGGATTTGGAAGCCAACCATGT
GCCCTCATTGTCGTAACATTCAGAGGGAGCATAGCACAATGTTTCTGCCG
TCTGATAGTGAAGACGATGTTGTTCCCTTACCGCCACGTCTTGGTAACCA
ACGAAATGCAGCGACCATTGCCAACGATGGAAGGTTCAGAGGGCATGCTA
ATGGTAGTTACATCAGATGCAGAAATTTCTATGGTTTTAATTGA
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Coding sequence (CDS) from alignment at Chr_10-CM003380.1:1151939..1152832+

>LR48_mrnaVigan10g014700_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan10g014700_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan10g014700; organism=Vigna angularis; type=CDS; length=894bp; location=Sequence derived from: Chr_10-CM003380.1:1151939..1152832+ (Vigna angularis
ATGGGAAACAACAACGGTGCATGTTTTCTCCGTCTAAGAGGGAGTCTTCC
ATTTCCATCCAATATTCAACTGGGAACAGATGCTACCATCAACATGAAGT
CATATATCACTCACTCTGATGATGGAACATCAGCCGAAAATGCACAAGTT
TTATACACCGTTGAAGGGTCAAATTGCAAACTCGTGTTAAGAAGGGTTGT
TTGCAACGGCAATGTCAACGCTCTAGGGTTCGTACTCCATGACAGCGTAA
TATGTTCAGGCCAAAAAAAACTAAGCTTTTCGATATTCAAAGATGGAACT
GATTTCCTTAACGTGTTCCATTCGGATAAGTATTCCAACTTGTGGACGAA
GACTAGGAAGAACTTCGATGCATGGGATGGTGTTACGGACACCAAAGTTT
GCTTGTATGGCACTGCAAACAGGTGTGGTCTTCTTGTTTTGGAGTGCAAA
AACGATTGTCCTTATCAACGTGATGCTAAGGCAGTGACTATAGCACACTA
TTTTGTTAGCAGTAACGGATCAGTGGCTGTTAACAGATCAAGTGAATCAA
CAGATATTGGGTTTTCTGTTGTGACAAAGGTTCGAAGGTGTGATGGAAAG
TATGAAATAATAGTGGAGGGTCCTGAACCACACCCTGTTTTTGCATTATT
ACACATGTTTGATGAAGTGAATAGAAGTGGGATTTGGAAGCCAACCATGT
GCCCTCATTGTCGTAACATTCAGAGGGAGCATAGCACAATGTTTCTGCCG
TCTGATAGTGAAGACGATGTTGTTCCCTTACCGCCACGTCTTGGTAACCA
ACGAAATGCAGCGACCATTGCCAACGATGGAAGGTTCAGAGGGCATGCTA
ATGGTAGTTACATCAGATGCAGAAATTTCTATGGTTTTAATTGA
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