LR48_mrnaVigan10g089800

Transcript Overview
NameLR48_mrnaVigan10g089800
Unique NameLR48_mrnaVigan10g089800_Va_Jingnong6_v1.1
TypemRNA
OrganismVigna angularis (Adzuki bean, red mung bean, azuki)
Sequence length1639
Producthypothetical protein
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr_10-CM003380.1supercontigChr_10-CM003380.1:11117029..11118667 -Vigna angularis Jingnong 6 genome v1.1n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Vigna angularis Jingnong 6 genome v1.12020-05-19
InterProScan: Vigna angularis Jingnong 6 genome v1.12020-05-21
BLAST: V. angularis Jingnong 6 genome v1.12020-05-21
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
ascaR261Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ascaR277Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ascaR297Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
asasL099Vigna angularis Jingnong 6 genome v1.1Vigna angularis
anasL0489Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anasL0686Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anasL0745Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anasL0920Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anasL0922Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anasL1230Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ascaiR352Cicer arietinum ICC 4958 genome v2Cicer arietinum
asccR0429Cajanus cajan Asha genome v1.0Cajanus cajan
asccR0434Cajanus cajan Asha genome v1.0Cajanus cajan
asccR0452Cajanus cajan Asha genome v1.0Cajanus cajan
ascrR290Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
ascrR325Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
ascrR327Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
aspsR285Pisum sativum Cameor genome v1aPisum sativum
aspsR296Pisum sativum Cameor genome v1aPisum sativum
aspvR315Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
aspvR320Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
asvuR262Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
asvuR265Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
astifR292Vicia faba cv. Tiffany genome v1.0Vicia faba
astifR305Vicia faba cv. Tiffany genome v1.0Vicia faba
astifR307Vicia faba cv. Tiffany genome v1.0Vicia faba
asvfhR302Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
asvfhR316Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
asvrvR195Vigna radiata cv. VC1973A genome v6.0Vigna radiata
asvrvR198Vigna radiata cv. VC1973A genome v6.0Vigna radiata
asvrvR252Vigna radiata cv. VC1973A genome v6.0Vigna radiata
asvssR324Vicia sativa cv. Studenica genome v1.0Vicia sativa
asvssR331Vicia sativa cv. Studenica genome v1.0Vicia sativa
asvssR334Vicia sativa cv. Studenica genome v1.0Vicia sativa
asvuaR241Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
asvuaR250Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
ascanR237Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
ascanR248Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum

Orthologs
Gene/TranscriptAssemblySpecies
rna-XM_022785190.1Vigna radiata cv. VC1973A genome v6.0Vigna radiata
Vfaba.Tiffany.R1.3g071720.1Vicia faba cv. Tiffany genome v1.0Vicia faba
Ca_09276.1Cicer arietinum ICC 4958 genome v2Cicer arietinum
Ca_03683Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
Vfaba.Hedin2.R1.3g087000.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
Cr_09174.1Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
rna-KK1_007008Cajanus cajan Asha genome v1.0Cajanus cajan
Phvul.007G179700.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
rna-TanjilR_10092Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
evm.model.Chr07.1348Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
Psat6g150480.1Pisum sativum Cameor genome v1aPisum sativum
rna-NM_001309678.1Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
Vigun07g146600.2Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
jg3243.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
gene-LR48_Vigan10g089800gene-LR48_Vigan10g089800_Va_Jingnong6_v1.1Vigna angularisgene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
LR48_mrnaVigan10g089800LR48_mrnaVigan10g089800_Va_Jingnong6_v1.1-proteinVigna angularispolypeptide
LR48_mrnaVigan10g089800_Va_Jingnong6_v1.1LR48_mrnaVigan10g089800_Va_Jingnong6_v1.1Vigna angularispolypeptide


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
LR48_mrnaVigan10g089800_Va_Jingnong6_v1.1-start_codon-Chr_10-CM003380.1_Va_Jingnong6_v1.1-1589992784:11118665..11118667LR48_mrnaVigan10g089800_Va_Jingnong6_v1.1-start_codon-Chr_10-CM003380.1_Va_Jingnong6_v1.1-1589992784:11118665..11118667Vigna angularisstart_codon


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
LR48_mrnaVigan10g089800_Va_Jingnong6_v1.1-exon-Chr_10-CM003380.1_Va_Jingnong6_v1.1-1589992784:11118254..11118667LR48_mrnaVigan10g089800_Va_Jingnong6_v1.1-exon-Chr_10-CM003380.1_Va_Jingnong6_v1.1-1589992784:11118254..11118667Vigna angularisexon
LR48_mrnaVigan10g089800_Va_Jingnong6_v1.1-exon-Chr_10-CM003380.1_Va_Jingnong6_v1.1-1589992784:11117029..11117403LR48_mrnaVigan10g089800_Va_Jingnong6_v1.1-exon-Chr_10-CM003380.1_Va_Jingnong6_v1.1-1589992784:11117029..11117403Vigna angularisexon


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
LR48_mrnaVigan10g089800_Va_Jingnong6_v1.1-intron-Chr_10-CM003380.1_Va_Jingnong6_v1.1-1589992784:11117404..11118253LR48_mrnaVigan10g089800_Va_Jingnong6_v1.1-intron-Chr_10-CM003380.1_Va_Jingnong6_v1.1-1589992784:11117404..11118253Vigna angularisintron


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS15759CDS15759_Va_Jingnong6_v1.1Vigna angularisCDS


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
LR48_mrnaVigan10g089800_Va_Jingnong6_v1.1-stop_codon-Chr_10-CM003380.1_Va_Jingnong6_v1.1-1589992784:11117029..11117031LR48_mrnaVigan10g089800_Va_Jingnong6_v1.1-stop_codon-Chr_10-CM003380.1_Va_Jingnong6_v1.1-1589992784:11117029..11117031Vigna angularisstop_codon


Homology
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BLAST of LR48_mrnaVigan10g089800 vs. DB:Swiss
Match: FB60_ARATH (F-box protein At1g55000 OS=Arabidopsis thaliana OX=3702 GN=At1g55000 PE=1 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 1.385e-93
Identity = 133/218 (61.01%), Postives = 169/218 (77.52%), Query Frame = 1 
Query:  136 ALSSTDILLLIFQNLPIPDLARASCVCRLWNSVASQREMLTRAFVAPWKLNHVIGDPLSGSFWRDNSIAKFAISHRISRGDTVASLAVKYAVQVMDIKRLNNMISDHGIYSRERLLIPISNPDILINRTCFIELDVYAKREVAVLYPNDVPDTRTAYV-SNRIS--SEESNKKVVDFLKRSMHVDNETAQYYWSVSNGDPRAAFAEFSADLNWDRQAG 780
            AL   D L++IFQ L + DLARASCVC++WNSVA++ +++  AF APW++  ++G P S SFWRDN I KFAISHRI RGD+V SLAVKYAVQVMDIKRLNNM+SDHGIYSR+RLLIPISNP+IL N TC++ELD YAKREVAVLY    P        +N+ S  S +  +++++ L+RSM VD+ TA YY +++ GDPR+A +EFSADL W+RQAG
Sbjct:    2 ALYCRDTLIIIFQKLTVADLARASCVCKVWNSVATEDDLVVSAFTAPWRIKELVGRPASVSFWRDNGIWKFAISHRICRGDSVTSLAVKYAVQVMDIKRLNNMMSDHGIYSRDRLLIPISNPEILANTTCYVELDKYAKREVAVLYLEGAPKREQPVPGTNQQSNLSADGKRRLIESLRRSMQVDDGTALYYLAIAEGDPRSALSEFSADLRWERQAG 219
The following BLAST results are available for this feature:
BLAST of LR48_mrnaVigan10g089800 vs. DB:Swiss
Analysis Date: 2020-05-21 (BLAST: V. angularis Jingnong 6 genome v1.1)
Total hits: 1
Match NameE-valueIdentityDescription
FB60_ARATH1.385e-9361.01F-box protein At1g55000 OS=Arabidopsis thaliana OX... [more]
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InterPro
Analysis Name: InterProScan: Vigna angularis Jingnong 6 genome v1.1
Date Performed: 2020-05-21
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR018392LysM domainSMARTSM00257LysM_2coord: 119..163
e-value: 1.6E-4
score: 31.0
IPR018392LysM domainPFAMPF01476LysMcoord: 120..163
e-value: 4.9E-7
score: 29.6
IPR018392LysM domainPROSITEPS51782LYSMcoord: 118..162
score: 12.307
IPR018392LysM domainCDDcd00118LysMcoord: 118..162
e-value: 5.50997E-8
score: 45.9393
NoneNo IPR availableGENE3D1.20.1280.50coord: 49..84
e-value: 4.1E-10
score: 41.4
NoneNo IPR availableSUPERFAMILY54106LysM domaincoord: 118..163
IPR036779LysM domain superfamilyGENE3D3.10.350.10coord: 110..168
e-value: 1.1E-11
score: 46.1
IPR001810F-box domainPFAMPF12937F-box-likecoord: 51..82
e-value: 1.9E-8
score: 34.0
IPR036047F-box-like domain superfamilySUPERFAMILY81383F-box domaincoord: 50..110

Sequences
The following sequences are available for this feature:

mRNA sequence

>LR48_mrnaVigan10g089800_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan10g089800_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan10g089800; organism=Vigna angularis; type=mRNA; length=1639bp
ATGGGTTGTTGTTGCGACGAAGACGACGGTGACATTTTCCGGCAACTCAT
CAATTCCAATTTCTCTTCCTCATCCTCCTCCACCGCTACCACCACTGCCA
CCACAGTGATCTCCCCCATGAATTCCCATTTCTCGGCACTCTCCTCCACC
GACATCCTCCTCCTCATCTTCCAGAACCTTCCGATCCCCGATCTCGCCCG
TGCCAGCTGCGTCTGCCGTCTCTGGAACTCCGTCGCCTCCCAGAGGGAGA
TGCTCACAAGAGCCTTCGTTGCCCCTTGGAAATTGAACCACGTTATCGGC
GACCCGCTCTCTGGAAGCTTCTGGAGAGACAATTCCATCGCCAAATTCGC
CATCTCCCATCGCATTTCCCGCGGCGACACCGTCGCTAGCCTCGCCGTCA
AGTACGCTGTTCAGGTCCGTGTCACCTGTAAAGAAGGGTTTATCACTTTT
CCTGATTAAGTTAAACAATATTGGGTCAAACTTTTTAGTAGTTTCCACAC
CACTAAATGCACCCATTCCATGCTGTTATCCTAGGTTGCTAGGTTTTCAG
TTATTAACTGAATTAAGGGAATCACAGTTACTGTTTGTGGCTTTTGAGGC
TGTTATTTTTCACAGTTACTTCTTGGAGCCTTTTTGGAATGCAATTTACT
TAATTTAAACCATGATTCCCTTGATTTTTTAATCAACGTTTATACAAGCA
TGTTAAAAGCCAAATCCTATTTTTATAGTTTTCTTAGAGACCATGTTTTC
TGTGAAATAGAAAAGTATCAGTCTATCTAGTAGTAGTAGGGTAAAAGGTT
TTTACAATAATTATACGGGTAAAAGACAAATCTTATTTTCGAAGTTTTCT
TAAAGACCATTTTTGCCTTCTATGTAAAAATTATATAACATCATCGAATC
AGATGTAAATTACCTTATTGAGTTTCACGTTAGTTATCTTAAAAGTGATA
TAACTGTAAGCTGCTAACAGCTCCAAGCAAAACAACAGCCACCCCACTTA
AGCAAACTAGCCAGAGTCAAAGAAAAATACAAGAAACCATCAATCATGAA
TCCTGAAAGAAATATCATCCAGGCACATGACAACACGAGTATCTAACACA
ACCCACCACACCACACCAGATCCAGAAAACCCCCATTCTAGAACTAGGAC
GATTCCTTCAAACACAGCAGGATTGTACATGCCATTAATAAAAAGAAAAG
AATCCTCTGTGAAACTTAGCCTTTATTTACATTGACATTGGATGATATTT
TTATGTTTTGATAGGTAATGGACATAAAGCGCCTGAACAACATGATAAGC
GACCATGGCATATACTCAAGGGAAAGGTTATTAATCCCTATTAGTAATCC
TGATATTCTGATTAACAGAACGTGCTTTATTGAGCTGGATGTCTATGCAA
AACGAGAAGTAGCAGTGCTGTATCCTAATGATGTGCCAGACACGAGGACT
GCCTACGTGTCAAACAGAATTTCCTCAGAAGAAAGCAACAAAAAGGTGGT
TGATTTCTTGAAGAGAAGCATGCATGTTGATAATGAAACAGCTCAATATT
ACTGGTCTGTTTCAAATGGTGATCCACGAGCGGCATTTGCCGAGTTTTCT
GCAGACCTTAACTGGGATAGGCAAGCAGGGCATTCATAG
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protein sequence of LR48_mrnaVigan10g089800_Va_Jingnong6_v1.1

>LR48_mrnaVigan10g089800_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan10g089800_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan10g089800_Va_Jingnong6_v1.1; organism=Vigna angularis; type=polypeptide; length=262bp
MGCCCDEDDGDIFRQLINSNFSSSSSSTATTTATTVISPMNSHFSALSST
DILLLIFQNLPIPDLARASCVCRLWNSVASQREMLTRAFVAPWKLNHVIG
DPLSGSFWRDNSIAKFAISHRISRGDTVASLAVKYAVQVMDIKRLNNMIS
DHGIYSRERLLIPISNPDILINRTCFIELDVYAKREVAVLYPNDVPDTRT
AYVSNRISSEESNKKVVDFLKRSMHVDNETAQYYWSVSNGDPRAAFAEFS
ADLNWDRQAGHS
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mRNA from alignment at Chr_10-CM003380.1:11117029..11118667-

Legend: polypeptidestart_codonexonCDSintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>LR48_mrnaVigan10g089800_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan10g089800_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan10g089800; organism=Vigna angularis; type=mRNA; length=1639bp; location=Sequence derived from: Chr_10-CM003380.1:11117029..11118667- (Vigna angularis
ATGGGTTGTTGTTGCGACGAAGACGACGGTGACATTTTCCGGCAACTCAT
CAATTCCAATTTCTCTTCCTCATCCTCCTCCACCGCTACCACCACTGCCA
CCACAGTGATCTCCCCCATGAATTCCCATTTCTCGGCACTCTCCTCCACC
GACATCCTCCTCCTCATCTTCCAGAACCTTCCGATCCCCGATCTCGCCCG
TGCCAGCTGCGTCTGCCGTCTCTGGAACTCCGTCGCCTCCCAGAGGGAGA
TGCTCACAAGAGCCTTCGTTGCCCCTTGGAAATTGAACCACGTTATCGGC
GACCCGCTCTCTGGAAGCTTCTGGAGAGACAATTCCATCGCCAAATTCGC
CATCTCCCATCGCATTTCCCGCGGCGACACCGTCGCTAGCCTCGCCGTCA
AGTACGCTGTTCAGGTCCGTGTCACCTGTAAAGAAGGGTTTATCACTTTT
CCTGATTAAGTTAAACAATATTGGGTCAAACTTTTTAGTAGTTTCCACAC
CACTAAATGCACCCATTCCATGCTGTTATCCTAGGTTGCTAGGTTTTCAG
TTATTAACTGAATTAAGGGAATCACAGTTACTGTTTGTGGCTTTTGAGGC
TGTTATTTTTCACAGTTACTTCTTGGAGCCTTTTTGGAATGCAATTTACT
TAATTTAAACCATGATTCCCTTGATTTTTTAATCAACGTTTATACAAGCA
TGTTAAAAGCCAAATCCTATTTTTATAGTTTTCTTAGAGACCATGTTTTC
TGTGAAATAGAAAAGTATCAGTCTATCTAGTAGTAGTAGGGTAAAAGGTT
TTTACAATAATTATACGGGTAAAAGACAAATCTTATTTTCGAAGTTTTCT
TAAAGACCATTTTTGCCTTCTATGTAAAAATTATATAACATCATCGAATC
AGATGTAAATTACCTTATTGAGTTTCACGTTAGTTATCTTAAAAGTGATA
TAACTGTAAGCTGCTAACAGCTCCAAGCAAAACAACAGCCACCCCACTTA
AGCAAACTAGCCAGAGTCAAAGAAAAATACAAGAAACCATCAATCATGAA
TCCTGAAAGAAATATCATCCAGGCACATGACAACACGAGTATCTAACACA
ACCCACCACACCACACCAGATCCAGAAAACCCCCATTCTAGAACTAGGAC
GATTCCTTCAAACACAGCAGGATTGTACATGCCATTAATAAAAAGAAAAG
AATCCTCTGTGAAACTTAGCCTTTATTTACATTGACATTGGATGATATTT
TTATGTTTTGATAGGTAATGGACATAAAGCGCCTGAACAACATGATAAGC
GACCATGGCATATACTCAAGGGAAAGGTTATTAATCCCTATTAGTAATCC
TGATATTCTGATTAACAGAACGTGCTTTATTGAGCTGGATGTCTATGCAA
AACGAGAAGTAGCAGTGCTGTATCCTAATGATGTGCCAGACACGAGGACT
GCCTACGTGTCAAACAGAATTTCCTCAGAAGAAAGCAACAAAAAGGTGGT
TGATTTCTTGAAGAGAAGCATGCATGTTGATAATGAAACAGCTCAATATT
ACTGGTCTGTTTCAAATGGTGATCCACGAGCGGCATTTGCCGAGTTTTCT
GCAGACCTTAACTGGGATAGGCAAGCAGGGCATTCATAG
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Coding sequence (CDS) from alignment at Chr_10-CM003380.1:11117029..11118667-

>LR48_mrnaVigan10g089800_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan10g089800_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan10g089800; organism=Vigna angularis; type=CDS; length=789bp; location=Sequence derived from: Chr_10-CM003380.1:11117029..11118667- (Vigna angularis
ATGGGTTGTTGTTGCGACGAAGACGACGGTGACATTTTCCGGCAACTCAT
CAATTCCAATTTCTCTTCCTCATCCTCCTCCACCGCTACCACCACTGCCA
CCACAGTGATCTCCCCCATGAATTCCCATTTCTCGGCACTCTCCTCCACC
GACATCCTCCTCCTCATCTTCCAGAACCTTCCGATCCCCGATCTCGCCCG
TGCCAGCTGCGTCTGCCGTCTCTGGAACTCCGTCGCCTCCCAGAGGGAGA
TGCTCACAAGAGCCTTCGTTGCCCCTTGGAAATTGAACCACGTTATCGGC
GACCCGCTCTCTGGAAGCTTCTGGAGAGACAATTCCATCGCCAAATTCGC
CATCTCCCATCGCATTTCCCGCGGCGACACCGTCGCTAGCCTCGCCGTCA
AGTACGCTGTTCAGGTAATGGACATAAAGCGCCTGAACAACATGATAAGC
GACCATGGCATATACTCAAGGGAAAGGTTATTAATCCCTATTAGTAATCC
TGATATTCTGATTAACAGAACGTGCTTTATTGAGCTGGATGTCTATGCAA
AACGAGAAGTAGCAGTGCTGTATCCTAATGATGTGCCAGACACGAGGACT
GCCTACGTGTCAAACAGAATTTCCTCAGAAGAAAGCAACAAAAAGGTGGT
TGATTTCTTGAAGAGAAGCATGCATGTTGATAATGAAACAGCTCAATATT
ACTGGTCTGTTTCAAATGGTGATCCACGAGCGGCATTTGCCGAGTTTTCT
GCAGACCTTAACTGGGATAGGCAAGCAGGGCATTCATAG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR018392LysM_dom
IPR036779LysM_dom_sf
IPR001810F-box_dom
IPR036047F-box-like_dom_sf
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding