LR48_mrnaVigan10g091600

Transcript Overview
NameLR48_mrnaVigan10g091600
Unique NameLR48_mrnaVigan10g091600_Va_Jingnong6_v1.1
TypemRNA
OrganismVigna angularis (Adzuki bean, red mung bean, azuki)
Sequence length1718
Producthypothetical protein
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr_10-CM003380.1supercontigChr_10-CM003380.1:11227868..11229585 +Vigna angularis Jingnong 6 genome v1.1n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Vigna angularis Jingnong 6 genome v1.12020-05-19
InterProScan: Vigna angularis Jingnong 6 genome v1.12020-05-21
BLAST: V. angularis Jingnong 6 genome v1.12020-05-21
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
ascaR261Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ascaR277Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ascaR297Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
asasL099Vigna angularis Jingnong 6 genome v1.1Vigna angularis
anasL0489Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anasL0686Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anasL0745Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anasL0920Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anasL0922Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anasL1230Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ascaiR342Cicer arietinum ICC 4958 genome v2Cicer arietinum
ascaiR352Cicer arietinum ICC 4958 genome v2Cicer arietinum
asccR0429Cajanus cajan Asha genome v1.0Cajanus cajan
asccR0434Cajanus cajan Asha genome v1.0Cajanus cajan
asccR0452Cajanus cajan Asha genome v1.0Cajanus cajan
ascrR290Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
ascrR325Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
ascrR327Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
aspsR285Pisum sativum Cameor genome v1aPisum sativum
aspsR296Pisum sativum Cameor genome v1aPisum sativum
aspvR315Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
aspvR320Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
asvuR262Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
asvuR265Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
astifR287Vicia faba cv. Tiffany genome v1.0Vicia faba
astifR292Vicia faba cv. Tiffany genome v1.0Vicia faba
astifR305Vicia faba cv. Tiffany genome v1.0Vicia faba
astifR307Vicia faba cv. Tiffany genome v1.0Vicia faba
asvfhR297Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
asvfhR302Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
asvfhR316Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
asvrvR195Vigna radiata cv. VC1973A genome v6.0Vigna radiata
asvrvR198Vigna radiata cv. VC1973A genome v6.0Vigna radiata
asvrvR252Vigna radiata cv. VC1973A genome v6.0Vigna radiata
asvssR324Vicia sativa cv. Studenica genome v1.0Vicia sativa
asvssR331Vicia sativa cv. Studenica genome v1.0Vicia sativa
asvssR334Vicia sativa cv. Studenica genome v1.0Vicia sativa
asvuaR241Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
asvuaR250Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
ascanR237Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
ascanR248Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum

Orthologs
Gene/TranscriptAssemblySpecies
jg3224.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
rna-XM_022785217.1Vigna radiata cv. VC1973A genome v6.0Vigna radiata
evm.model.Chr07.1332Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
rna-KK1_007026Cajanus cajan Asha genome v1.0Cajanus cajan
Ca_03697Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
rna-XM_004495683.3Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
Vfaba.Hedin2.R1.3g085120.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
Vigun07g148200.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
rna-TanjilR_17594Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Phvul.007G181300.2Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
Ca_09264.1Cicer arietinum ICC 4958 genome v2Cicer arietinum
Cr_09163.1Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
Vfaba.Tiffany.R1.3g070160.1Vicia faba cv. Tiffany genome v1.0Vicia faba
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
gene-LR48_Vigan10g091600gene-LR48_Vigan10g091600_Va_Jingnong6_v1.1Vigna angularisgene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
LR48_mrnaVigan10g091600LR48_mrnaVigan10g091600_Va_Jingnong6_v1.1-proteinVigna angularispolypeptide
LR48_mrnaVigan10g091600_Va_Jingnong6_v1.1LR48_mrnaVigan10g091600_Va_Jingnong6_v1.1Vigna angularispolypeptide


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
LR48_mrnaVigan10g091600_Va_Jingnong6_v1.1-start_codon-Chr_10-CM003380.1_Va_Jingnong6_v1.1-1589992784:11227868..11227870LR48_mrnaVigan10g091600_Va_Jingnong6_v1.1-start_codon-Chr_10-CM003380.1_Va_Jingnong6_v1.1-1589992784:11227868..11227870Vigna angularisstart_codon


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
LR48_mrnaVigan10g091600_Va_Jingnong6_v1.1-exon-Chr_10-CM003380.1_Va_Jingnong6_v1.1-1589992784:11227868..11228762LR48_mrnaVigan10g091600_Va_Jingnong6_v1.1-exon-Chr_10-CM003380.1_Va_Jingnong6_v1.1-1589992784:11227868..11228762Vigna angularisexon
LR48_mrnaVigan10g091600_Va_Jingnong6_v1.1-exon-Chr_10-CM003380.1_Va_Jingnong6_v1.1-1589992784:11229341..11229585LR48_mrnaVigan10g091600_Va_Jingnong6_v1.1-exon-Chr_10-CM003380.1_Va_Jingnong6_v1.1-1589992784:11229341..11229585Vigna angularisexon


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
LR48_mrnaVigan10g091600_Va_Jingnong6_v1.1-intron-Chr_10-CM003380.1_Va_Jingnong6_v1.1-1589992784:11228763..11229340LR48_mrnaVigan10g091600_Va_Jingnong6_v1.1-intron-Chr_10-CM003380.1_Va_Jingnong6_v1.1-1589992784:11228763..11229340Vigna angularisintron


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS15775CDS15775_Va_Jingnong6_v1.1Vigna angularisCDS


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
LR48_mrnaVigan10g091600_Va_Jingnong6_v1.1-stop_codon-Chr_10-CM003380.1_Va_Jingnong6_v1.1-1589992784:11229583..11229585LR48_mrnaVigan10g091600_Va_Jingnong6_v1.1-stop_codon-Chr_10-CM003380.1_Va_Jingnong6_v1.1-1589992784:11229583..11229585Vigna angularisstop_codon


Homology
[Close]
BLAST of LR48_mrnaVigan10g091600 vs. DB:Swiss
Match: IDM2_ARATH (Increased DNA methylation 2 OS=Arabidopsis thaliana OX=3702 GN=IDM2 PE=1 SV=1)

HSP 1 Score: 256.144 bits (653), Expect = 1.499e-81
Identity = 159/365 (43.56%), Postives = 220/365 (60.27%), Query Frame = 1 
Query:   40 DDQCFLVYFIVGTYFGPDI-KSEGATKKSILQRVAEGFPPYTLNQLTNSFVKVAELERVYYYILRKSDKSLILKISFLRRFFQGQGGNSN--YPHFLDLFPPHLHPQSRFQNLYNIVHNIVFINNPDIRYIKPEDVARFKRLSGVEELHVDRDAVRLQLGASSLDNCVLNNSNMSMGKNENEFSGGFYKFRDNVNGRVRDATSRHQGGDIEDEVRDDPEEVGAAMLFLPTPPSREELSDMVAATKNGFALTGSVAKAQFGPSIGLLDIGECEDSYLFRVSLPGVKRDEKEFYCDVETDGKVMXXXXXXXXXXXXYRYSHAFEMQTQNLCPPGQFTLSFRLPGPVDPHHFSGNFCTDGVLEGIVMK 1125
            +D+ FL++FI+GTYFGPD+ K     K+S  Q   +      +++L+ S +K AELERVYY+I+R  D SL++K   LR +F  +  +SN  YP F+DLFP  LHP++  ++ +  + +IVFIN+PD   ++ E VARFKRL+G+       D+  L L   S+D   +  SN  +  NE +                          +I++ V    E+         T  S EE SD+ A  +         ++A  G  +GL+DIGEC+D+YLFRVSLPGVKRDE+ F C+VE +GKV++ GVT TG   V RYSH FEMQT++LCPPG F++SFRLPGPV PH FSGNF TDG+LEG+VMK
Sbjct:   32 EDKLFLLHFIIGTYFGPDLRKQHHRPKQSAFQ--IQALKNVVVDELSGSLMKRAELERVYYHIIRNVDPSLVMKPKKLREYFNAKRNDSNRDYPLFVDLFPRKLHPETHVRHKFKFIRSIVFINDPDTSCMREECVARFKRLTGL-------DSFALSL---SVD---VTKSNGVVAANEVKV-------------------------EIDESVEPVKEDNAG------TCTSGEE-SDVAAKPEVK-------SEAHGGLMVGLMDIGECDDAYLFRVSLPGVKRDERYFSCEVEDNGKVLVRGVTTTGGKRVKRYSHVFEMQTRSLCPPGNFSVSFRLPGPVHPHEFSGNFGTDGILEGVVMK 342
[Close]
BLAST of LR48_mrnaVigan10g091600 vs. DB:Swiss
Match: IDM2L_ARATH (Alpha-crystallin domain-containing protein 22.3 OS=Arabidopsis thaliana OX=3702 GN=ACD22.3 PE=1 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 7.247e-49
Identity = 89/156 (57.05%), Postives = 115/156 (73.72%), Query Frame = 1 
Query:  664 DEVRDDPEEVGA-AMLFLPTPPSREELSDMVAATKNGFALTGSVAKAQFGPSIGLLDIGECEDSYLFRVSLPGVKRDEKEFYCDVETDGKVMXXXXXXXXXXXXYRYSHAFEMQTQNLCPPGQFTLSFRLPGPVDPHHFSGNFCTDGVLEGIVMKA 1128
            + + D  E+VG  AM+FLP+  S  E S++++ TK G ALTGS A  + G +IGL+DI E EDSY FRV+LPGV RDEKEF C++E DGK+MI G T TGE TV +++  F+M TQNLCPPG FT++F+LPGPV    F+GNF +DGVLEG+V K 
Sbjct:   48 NRMNDSVEKVGGPAMIFLPSD-SSSEFSNLISQTKTGVALTGSAAMGKIGLTIGLVDIAESEDSYYFRVALPGVSRDEKEFSCEIEPDGKIMIKGATTTGEQTVCKHNQIFKMLTQNLCPPGHFTINFQLPGPVSNEEFNGNFGSDGVLEGVVKKV 202
[Close]
BLAST of LR48_mrnaVigan10g091600 vs. DB:Swiss
Match: IDM3_ARATH (Increased DNA methylation 3 OS=Arabidopsis thaliana OX=3702 GN=IDM3 PE=1 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 2.287e-29
Identity = 58/117 (49.57%), Postives = 83/117 (70.94%), Query Frame = 1 
Query:  781 TGSVAKAQFGPSIGLLDIGECEDSYLFRVSLPGVKRDEKEFYCDVETDGKVMXXXXXXXXXXXXYRYSHAFEMQTQNLCPPGQFTLSFRLPGPVDPHHFSGNFCTDGVLEGIVMKAK 1131
            TG+ +K   G S+G++DIG  + +Y F+V+LPGV++D  EF C++E+DGKV++ G T  GE  + R+S  FEM  + LCPPG F L F LPGPVDP  FS NF +DG+ EG++++ K
Sbjct:  345 TGTASKETLGSSVGVVDIGVNKVAYFFQVALPGVRKDYGEFSCEIESDGKVILEGSTTRGEKNIKRHSRVFEMNIRKLCPPGPFKLCFNLPGPVDPRLFSPNFRSDGIFEGVIIRHK 461

HSP 2 Score: 114.775 bits (286), Expect = 5.513e-27
Identity = 72/230 (31.30%), Postives = 118/230 (51.30%), Query Frame = 1 
Query:   37 NDDQCFLVYFIVGTYFGPDIKSEGATKKSILQRVAEGFPPYTLNQLTNSFVKVAELERVYYYILRKSDKSLILKISFLRRFFQGQ---GGNSNYPHFLDLFPPHLHPQSRFQNLYNIVHNIVFINNPDIRYIKPEDVARFKRLSGVEELHVDRDA-----VRLQLGASSLDNCVLNNSNMSMGKNENEFSGGFYKFRDNVNGRVRDATSRHQGGD-IEDEVRDDPEEVGA 699
            + DQ FLV FI+  Y GPD+ S+   + S  QR+A G PPYTL  + +S + V++L+ +YY +LR +  SL+L    +  + +G      +  +P F   FP +LHPQ R+   + IV  IV I++P + +I  E++ RF+ LS +++L +DR       V L     +  +C  N    + G   NE          N +G +++   R +G D +   V  +PE +  
Sbjct:    9 SSDQYFLVNFIMSNYLGPDVYSDNP-RCSSSQRLARGLPPYTLMHIGSSSLTVSQLQNLYYNVLRNAKSSLLLHPDMIYMYLKGYLPLEPSGKFPQFTHFFPTNLHPQKRYSPSHEIVKGIVVIDDPAVGFINKEELQRFRCLSRLDDLKIDRVTSLSPRVNLDESRETEQDCSRNGDATANGVVTNE--------DYNSSGELQETCKRKEGEDAVASCVISEPERLSG 229
The following BLAST results are available for this feature:
BLAST of LR48_mrnaVigan10g091600 vs. DB:Swiss
Analysis Date: 2020-05-21 (BLAST: V. angularis Jingnong 6 genome v1.1)
Total hits: 3
Match NameE-valueIdentityDescription
IDM2_ARATH1.499e-8143.56Increased DNA methylation 2 OS=Arabidopsis thalian... [more]
IDM2L_ARATH7.247e-4957.05Alpha-crystallin domain-containing protein 22.3 OS... [more]
IDM3_ARATH2.287e-2949.57Increased DNA methylation 3 OS=Arabidopsis thalian... [more]
back to top
InterPro
Analysis Name: InterProScan: Vigna angularis Jingnong 6 genome v1.1
Date Performed: 2020-05-21
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008978HSP20-like chaperoneGENE3D2.60.40.790coord: 240..379
e-value: 4.9E-12
score: 47.7
IPR008978HSP20-like chaperoneSUPERFAMILY49764HSP20-like chaperonescoord: 272..370
IPR002068Alpha crystallin/Hsp20 domainPROSITEPS01031SHSPcoord: 264..379
score: 12.028
NoneNo IPR availableCDDcd06464ACD_sHsps-likecoord: 277..375
e-value: 1.68878E-12
score: 60.6456

Sequences
The following sequences are available for this feature:

mRNA sequence

>LR48_mrnaVigan10g091600_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan10g091600_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan10g091600; organism=Vigna angularis; type=mRNA; length=1718bp
ATGGTTTCCGAGGCTGATGAAAAGAATGTGATGCCCAATGATGATCAGTG
CTTTTTAGTGTATTTCATTGTGGGAACCTACTTTGGTCCTGACATCAAAT
CCGAAGGAGCCACCAAAAAATCAATATTGCAGAGAGTAGCAGAAGGGTTC
CCTCCATATACATTGAATCAATTAACCAATTCTTTCGTCAAAGTTGCTGA
ATTGGAGCgtgtttattattatatactcaGGAAGAGTGATAAATCACTGA
TCCTGAAGATAAGCTTTCTGCGTCGGTTCTTTCAAGGTCAGGGTGGAAAT
AGCAATTACCCCCACTTTCTCGATTTGTTCCCTCCCCACTTGCACCCTCA
GTCCCGCTTCCAAAACCTCTATAATATCGTTCACAATATTGTGTTTATTA
ACAATCCTGATATCAGGTACATAAAGCCAGAGGATGTTGCGAGGTTCAAG
AGACTGAGTGGGGTTGAAGAGTTGCATGTGGACAGAGACGCTGTCAGGTT
GCAACTGGGTGCTTCTTCTTTAGACAATTGTGTTCTCAACAACTCTAACA
TGTCTATGGGGAAGAATGAGAATGAGTTCTCTGGTGGGTTTTATAAGTTT
CGGGATAATGTTAATGGTCGTGTGAGGGATGCTACAAGTCGACATCAGGG
TGGTGATATTGAAGATGAGGTGAGGGATGATCCTGAAGAAGTTGGGGCAG
CTATGTTGTTCCTTCCTACCCCTCCTTCTAGGGAGGAATTGTCTGACATG
GTGGCTGCTACAAAGAATGGATTTGCTTTAACTGGAAGTGTGGCTAAGGC
ACAATTTGGTCCCAGCATAGGACTTCTGGACATTGGAGAGTGTGAAGACT
CCTACCTCTTTCGTGTGTCTCTTCCAGGAGTCAAGAGGGATGAAAGTAAG
TGACTTATTCAGTGTCAACTCTCAAGAATTCATTTCTAATATACTGGCTT
TGCTGACTGAAAATTTCCATGAAAATTGTGTAGGACtcatataaaattca
aaagaacacaattttacatattttaattctttaaccAGTGTGAAGAACTG
AATAGTGTTTGTCTTGATGTATTTGTGTGTTATTCTTTTAATTCTGAGGT
TTTATGCTGTATGCACCTGAATATTGGGAATGTCTATTTTGTGTAAATGC
TGTGAACTTTATTGCAAAAAGCTTTTGATTAATGAAATGGTTTGTTTTAA
GTTCCATGCCAGCTGATATGGATCTCAATATATGAAGGGGTCGACTTGTT
ATTGTAGGAGAAATCTACCCTTCTGGAAgcttattatatttaatttttgg
taaTTTGCTTTCTTAAATATGGTCAATGGTGCTTTTAAGTGTGTTAAGTA
ATGCTTATGTATGCCAAATTTCTAAATTGGCCATGAAAATAATAATCCCG
TTTGATAACTTTTACAGCATTGTGTCTCGGATATGCTACTGATAACTAAC
ATAGCTGGGGTTTATAACTGCAGAGGAATTCTATTGTGATGTTGAGACTG
ATGGGAAGGTAATGATAACAGGAGTAACTATAACAGGAGAGACTACAGTA
TACAGGTATTCTCATGCTTTTGAAATGCAAACTCAAAACCTTTGTCCACC
AGGTCAATTTACCTTGTCCTTCCGGCTGCCTGGTCCTGTTGATCCACATC
ACTTTTCAGGTAATTTTTGCACTGATGGAgttcttgaaggaattgttatG
AAAGCAAAATCAGGATGA
back to top

protein sequence of LR48_mrnaVigan10g091600_Va_Jingnong6_v1.1

>LR48_mrnaVigan10g091600_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan10g091600_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan10g091600_Va_Jingnong6_v1.1; organism=Vigna angularis; type=polypeptide; length=379bp
MVSEADEKNVMPNDDQCFLVYFIVGTYFGPDIKSEGATKKSILQRVAEGF
PPYTLNQLTNSFVKVAELERVYYYILRKSDKSLILKISFLRRFFQGQGGN
SNYPHFLDLFPPHLHPQSRFQNLYNIVHNIVFINNPDIRYIKPEDVARFK
RLSGVEELHVDRDAVRLQLGASSLDNCVLNNSNMSMGKNENEFSGGFYKF
RDNVNGRVRDATSRHQGGDIEDEVRDDPEEVGAAMLFLPTPPSREELSDM
VAATKNGFALTGSVAKAQFGPSIGLLDIGECEDSYLFRVSLPGVKRDEKE
FYCDVETDGKVMITGVTITGETTVYRYSHAFEMQTQNLCPPGQFTLSFRL
PGPVDPHHFSGNFCTDGVLEGIVMKAKSG
back to top

mRNA from alignment at Chr_10-CM003380.1:11227868..11229585+

Legend: polypeptidestart_codonexonCDSintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>LR48_mrnaVigan10g091600_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan10g091600_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan10g091600; organism=Vigna angularis; type=mRNA; length=1718bp; location=Sequence derived from: Chr_10-CM003380.1:11227868..11229585+ (Vigna angularis
ATGGTTTCCGAGGCTGATGAAAAGAATGTGATGCCCAATGATGATCAGTG
CTTTTTAGTGTATTTCATTGTGGGAACCTACTTTGGTCCTGACATCAAAT
CCGAAGGAGCCACCAAAAAATCAATATTGCAGAGAGTAGCAGAAGGGTTC
CCTCCATATACATTGAATCAATTAACCAATTCTTTCGTCAAAGTTGCTGA
ATTGGAGCgtgtttattattatatactcaGGAAGAGTGATAAATCACTGA
TCCTGAAGATAAGCTTTCTGCGTCGGTTCTTTCAAGGTCAGGGTGGAAAT
AGCAATTACCCCCACTTTCTCGATTTGTTCCCTCCCCACTTGCACCCTCA
GTCCCGCTTCCAAAACCTCTATAATATCGTTCACAATATTGTGTTTATTA
ACAATCCTGATATCAGGTACATAAAGCCAGAGGATGTTGCGAGGTTCAAG
AGACTGAGTGGGGTTGAAGAGTTGCATGTGGACAGAGACGCTGTCAGGTT
GCAACTGGGTGCTTCTTCTTTAGACAATTGTGTTCTCAACAACTCTAACA
TGTCTATGGGGAAGAATGAGAATGAGTTCTCTGGTGGGTTTTATAAGTTT
CGGGATAATGTTAATGGTCGTGTGAGGGATGCTACAAGTCGACATCAGGG
TGGTGATATTGAAGATGAGGTGAGGGATGATCCTGAAGAAGTTGGGGCAG
CTATGTTGTTCCTTCCTACCCCTCCTTCTAGGGAGGAATTGTCTGACATG
GTGGCTGCTACAAAGAATGGATTTGCTTTAACTGGAAGTGTGGCTAAGGC
ACAATTTGGTCCCAGCATAGGACTTCTGGACATTGGAGAGTGTGAAGACT
CCTACCTCTTTCGTGTGTCTCTTCCAGGAGTCAAGAGGGATGAAAGTAAG
TGACTTATTCAGTGTCAACTCTCAAGAATTCATTTCTAATATACTGGCTT
TGCTGACTGAAAATTTCCATGAAAATTGTGTAGGACtcatataaaattca
aaagaacacaattttacatattttaattctttaaccAGTGTGAAGAACTG
AATAGTGTTTGTCTTGATGTATTTGTGTGTTATTCTTTTAATTCTGAGGT
TTTATGCTGTATGCACCTGAATATTGGGAATGTCTATTTTGTGTAAATGC
TGTGAACTTTATTGCAAAAAGCTTTTGATTAATGAAATGGTTTGTTTTAA
GTTCCATGCCAGCTGATATGGATCTCAATATATGAAGGGGTCGACTTGTT
ATTGTAGGAGAAATCTACCCTTCTGGAAgcttattatatttaatttttgg
taaTTTGCTTTCTTAAATATGGTCAATGGTGCTTTTAAGTGTGTTAAGTA
ATGCTTATGTATGCCAAATTTCTAAATTGGCCATGAAAATAATAATCCCG
TTTGATAACTTTTACAGCATTGTGTCTCGGATATGCTACTGATAACTAAC
ATAGCTGGGGTTTATAACTGCAGAGGAATTCTATTGTGATGTTGAGACTG
ATGGGAAGGTAATGATAACAGGAGTAACTATAACAGGAGAGACTACAGTA
TACAGGTATTCTCATGCTTTTGAAATGCAAACTCAAAACCTTTGTCCACC
AGGTCAATTTACCTTGTCCTTCCGGCTGCCTGGTCCTGTTGATCCACATC
ACTTTTCAGGTAATTTTTGCACTGATGGAgttcttgaaggaattgttatG
AAAGCAAAATCAGGATGA
back to top

Coding sequence (CDS) from alignment at Chr_10-CM003380.1:11227868..11229585+

>LR48_mrnaVigan10g091600_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan10g091600_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan10g091600; organism=Vigna angularis; type=CDS; length=1140bp; location=Sequence derived from: Chr_10-CM003380.1:11227868..11229585+ (Vigna angularis
ATGGTTTCCGAGGCTGATGAAAAGAATGTGATGCCCAATGATGATCAGTG
CTTTTTAGTGTATTTCATTGTGGGAACCTACTTTGGTCCTGACATCAAAT
CCGAAGGAGCCACCAAAAAATCAATATTGCAGAGAGTAGCAGAAGGGTTC
CCTCCATATACATTGAATCAATTAACCAATTCTTTCGTCAAAGTTGCTGA
ATTGGAGCgtgtttattattatatactcaGGAAGAGTGATAAATCACTGA
TCCTGAAGATAAGCTTTCTGCGTCGGTTCTTTCAAGGTCAGGGTGGAAAT
AGCAATTACCCCCACTTTCTCGATTTGTTCCCTCCCCACTTGCACCCTCA
GTCCCGCTTCCAAAACCTCTATAATATCGTTCACAATATTGTGTTTATTA
ACAATCCTGATATCAGGTACATAAAGCCAGAGGATGTTGCGAGGTTCAAG
AGACTGAGTGGGGTTGAAGAGTTGCATGTGGACAGAGACGCTGTCAGGTT
GCAACTGGGTGCTTCTTCTTTAGACAATTGTGTTCTCAACAACTCTAACA
TGTCTATGGGGAAGAATGAGAATGAGTTCTCTGGTGGGTTTTATAAGTTT
CGGGATAATGTTAATGGTCGTGTGAGGGATGCTACAAGTCGACATCAGGG
TGGTGATATTGAAGATGAGGTGAGGGATGATCCTGAAGAAGTTGGGGCAG
CTATGTTGTTCCTTCCTACCCCTCCTTCTAGGGAGGAATTGTCTGACATG
GTGGCTGCTACAAAGAATGGATTTGCTTTAACTGGAAGTGTGGCTAAGGC
ACAATTTGGTCCCAGCATAGGACTTCTGGACATTGGAGAGTGTGAAGACT
CCTACCTCTTTCGTGTGTCTCTTCCAGGAGTCAAGAGGGATGAAAAGGAA
TTCTATTGTGATGTTGAGACTGATGGGAAGGTAATGATAACAGGAGTAAC
TATAACAGGAGAGACTACAGTATACAGGTATTCTCATGCTTTTGAAATGC
AAACTCAAAACCTTTGTCCACCAGGTCAATTTACCTTGTCCTTCCGGCTG
CCTGGTCCTGTTGATCCACATCACTTTTCAGGTAATTTTTGCACTGATGG
AgttcttgaaggaattgttatGAAAGCAAAATCAGGATGA
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR008978HSP20-like_chaperone
IPR002068A-crystallin/Hsp20_dom