LR48_mrnaVigan10g092200
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following start_codon feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following intron feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
Homology
BLAST of LR48_mrnaVigan10g092200 vs. DB:Swiss
Match: BH096_ARATH (Transcription factor bHLH96 OS=Arabidopsis thaliana OX=3702 GN=BHLH96 PE=1 SV=1) HSP 1 Score: 245.358 bits (625), Expect = 2.003e-78 Identity = 165/344 (47.97%), Postives = 208/344 (60.47%), Query Frame = 1 Query: 1 MALEAVVFSQSQDPFGGYGSVKDF--YNCTFLAATSPNWGDYXXXXXXXXXXXXQGSISTFLDNSNN-----QPDNYPYGGD---WTSSSSSILPHLNDLQEATDPSNATHSLDTLTTRPKRRRAKSRKNKEEIENQRMTHIAVERNRRKQMNEYLSVLRSLMPDSYIQRGDQASIIGGAINFVKELEQRLHFLGAQ-KEGERKSDAG--------GATNMPFSEFFAFPQYSTXXXXXXXDNSATVGEDVGEVKSGIADIEVTMVESHANLKIRSKKRPKQLLKLVSGLHTMRLTILHLNVTTTGEIVLYSLSVKVEDDCKLGSVDDIAEAVYQTLDRIQQEA 975 MALEAVV+ Q DPF Y S KDF Y+ F + D + + QG F N+ N D+Y Y + W LP+ + + + P + + R KRRR +S KNKEEIENQRMTHIAVERNRRKQMNEYL+VLRSLMP Y QRGDQASI+GGAIN++KELE L + K + AG +++ PFS+FFAFPQYS SA E G+A+IEVTMVESHA+LKI +KKRP+QLLKLVS + ++RLT+LHLNVTT + VLYS+SVKVE+ +L +V+DIA AV Q L RI++E+ Sbjct: 1 MALEAVVYPQ--DPFS-YISCKDFPFYDLYFQEEEDQDPQD-----TKNNIKLGQGQGHGFASNNYNGRTGDYSDDYNYNEEDLQWPRD----LPYGSAVDTESQPPPS--DVAAGGGRRKRRRTRSSKNKEEIENQRMTHIAVERNRRKQMNEYLAVLRSLMPPYYAQRGDQASIVGGAINYLKELEHHLQSMEPPVKTATEDTGAGHDQTKTTSASSSGPFSDFFAFPQYSNRP------TSAAAAE-------GMAEIEVTMVESHASLKILAKKRPRQLLKLVSSIQSLRLTLLHLNVTTRDDSVLYSISVKVEEGSQLNTVEDIAAAVNQILRRIEEES 317
BLAST of LR48_mrnaVigan10g092200 vs. DB:Swiss
Match: BH094_ARATH (Transcription factor bHLH94 OS=Arabidopsis thaliana OX=3702 GN=BHLH94 PE=1 SV=2) HSP 1 Score: 230.335 bits (586), Expect = 1.150e-72 Identity = 120/211 (56.87%), Postives = 157/211 (74.41%), Query Frame = 1 Query: 355 KNKEEIENQRMTHIAVERNRRKQMNEYLSVLRSLMPDSYIQRGDQASIIGGAINFVKELEQRLHFLGAQ--KEGERKSDAGGATNM--PFSEFFAFPQYSTXXXXXXXDNSATVGEDVGEVKSGIADIEVTMVESHANLKIRSKKRPKQLLKLVSGLHTMRLTILHLNVTTTGEIVLYSLSVKVEDDCKLGSVDDIAEAVYQTLDRIQQEA 975 KNKEEIENQRMTHIAVERNRRKQMNEYL+VLRSLMP SY QRGDQASI+GGAIN+VKELE L + + + + K D +++ PF++FF+FPQYST ++S++ A+IEVT+ ESHAN+KI +KK+P+QLLKL++ L ++RLT+LHLNVTT +LYS+SV+VE+ +L +VDDIA A+ QT+ RIQ+E Sbjct: 105 KNKEEIENQRMTHIAVERNRRKQMNEYLAVLRSLMPSSYAQRGDQASIVGGAINYVKELEHILQSMEPKRTRTHDPKGDKTSTSSLVGPFTDFFSFPQYSTKSSSDVPESSSSP-----------AEIEVTVAESHANIKIMTKKKPRQLLKLITSLQSLRLTLLHLNVTTLHNSILYSISVRVEEGSQLNTVDDIATALNQTIRRIQEET 304
BLAST of LR48_mrnaVigan10g092200 vs. DB:Swiss
Match: BH057_ARATH (Transcription factor bHLH57 OS=Arabidopsis thaliana OX=3702 GN=BHLH57 PE=1 SV=1) HSP 1 Score: 183.341 bits (464), Expect = 2.591e-54 Identity = 95/208 (45.67%), Postives = 140/208 (67.31%), Query Frame = 1 Query: 355 KNKEEIENQRMTHIAVERNRRKQMNEYLSVLRSLMPDSYIQRGDQASIIGGAINFVKELEQRLHFLGAQKEGERKSDAGGATNMPFSEFFAFPQYSTXXXXXXXDNSATVGEDVGEVKSGIADIEVTMVESHANLKIRSKKRPKQLLKLVSGLHTMRLTILHLNVTTTGEIVLYSLSVKVEDDCKLGSVDDIAEAVYQTLDRIQQEAV 978 KNK+E+ENQRMTHIAVERNRR+QMNE+L+ LRSLMP S++QRGDQASI+GGAI+F+KELEQ L L A+K + + + S A S S S+N T G+ ++E T++++H +LK+R K+ +Q+LK + + ++L ILHL ++++ + V+YS ++K+ED CKLGS D+IA AV+Q ++I E + Sbjct: 105 KNKDEVENQRMTHIAVERNRRRQMNEHLNSLRSLMPPSFLQRGDQASIVGGAIDFIKELEQLLQSLEAEKRKDGTDETPKTASCSSSSSLACTNSSISSVSTTSENGFTARFGGGDT----TEVEATVIQNHVSLKVRCKRGKRQILKAIVSIEELKLAILHLTISSSFDFVIYSFNLKMEDGCKLGSADEIATAVHQIFEQINGEVM 308
BLAST of LR48_mrnaVigan10g092200 vs. DB:Swiss
Match: FAMA_ARATH (Transcription factor FAMA OS=Arabidopsis thaliana OX=3702 GN=FAMA PE=1 SV=1) HSP 1 Score: 177.178 bits (448), Expect = 7.825e-51 Identity = 101/222 (45.50%), Postives = 138/222 (62.16%), Query Frame = 1 Query: 322 TRPKRRRAKSRKNKEEIENQRMTHIAVERNRRKQMNEYLSVLRSLMPDSYIQRGDQASIIGGAINFVKELEQRLHFLGAQKE----GERKSDAGGATNMPFSEFFAFPQYS----TXXXXXXXDNSATVGEDVGEVKSGIADIEVTMVESHANLKIRSKKRPKQLLKLVSGLHTMRLTILHLNVTTTGEIVLYSLSVKVEDDCKLGSVDDIAEAVYQTLDRI 963 + KR+RA++ K EE+E+QRMTHIAVERNRRKQMNE+L VLRSLMP SY+QRGDQASIIGGAI FV+ELEQ L L +QK GE D T S + +G + + E+ E KS +AD+EV ++ A +KI S++RP QL+K ++ L + L+ILH N+TT + VLYS +VK+ + + + +DIA ++ Q I Sbjct: 176 VKSKRKRARTSKTSEEVESQRMTHIAVERNRRKQMNEHLRVLRSLMPGSYVQRGDQASIIGGAIEFVRELEQLLQCLESQKRRRILGETGRDMTTTTTSSSSPITTVANQAQPLIITGNVTELEGGGGLREETAENKSCLADVEVKLLGFDAMIKILSRRRPGQLIKTIAALEDLHLSILHTNITTMEQTVLYSFNVKITSETRF-TAEDIASSIQQIFSFI 396
BLAST of LR48_mrnaVigan10g092200 vs. DB:Swiss
Match: BH099_ARATH (Transcription factor bHLH99 OS=Arabidopsis thaliana OX=3702 GN=BHLH99 PE=2 SV=1) HSP 1 Score: 173.326 bits (438), Expect = 1.022e-50 Identity = 92/202 (45.54%), Postives = 139/202 (68.81%), Query Frame = 1 Query: 373 ENQRMTHIAVERNRRKQMNEYLSVLRSLMPDSYIQRGDQASIIGGAINFVKELEQRLHFLGAQKEGERKSDAGGATNMPFSEFFAFPQYSTXXXXXXXDNSATVGEDVGEVK-SGIADIEVTMVESHANLKIRSKKRPKQLLKLVSGLHTMRLTILHLNVTTTGEIVLYSLSVKVEDDCKLG-SVDDIAEAVYQTLDRIQQE 972 ENQRM HIAVERNRRKQMN +LS+L+S+MP SY Q DQASII G I+++K+LEQRL L AQ + + + + FS+FF FPQYST+ + S++ + +AD+EVTMVE HAN+K+ +K +P+ L K+++ +++ L+ LHLN+TT+ ++ L++ SVKVE DC+L S +++A V++ + R+ +E Sbjct: 98 ENQRMNHIAVERNRRKQMNHFLSILKSMMPLSYSQPNDQASIIEGTISYLKKLEQRLQSLEAQLKATKLNQSPNI----FSDFFMFPQYSTATATATATASSSSSSHHHHKRLEVVADVEVTMVERHANIKVLTKTQPRLLFKIINEFNSLGLSTLHLNLTTSKDMSLFTFSVKVEADCQLTPSGNEVANTVHEVVRRVHKE 295
BLAST of LR48_mrnaVigan10g092200 vs. DB:Swiss
Match: BH071_ARATH (Transcription factor bHLH71 OS=Arabidopsis thaliana OX=3702 GN=BHLH71 PE=1 SV=1) HSP 1 Score: 170.629 bits (431), Expect = 2.476e-49 Identity = 107/234 (45.73%), Postives = 144/234 (61.54%), Query Frame = 1 Query: 355 KNKEEIENQRMTHIAVERNRRKQMNEYLSVLRSLMPDSYIQRGDQASIIGGAINFVKELEQRLHFLGAQKEGERK----------SDAGGATNMP-------FSEFFAFPQYSTXXXXXXXDNSATVGEDVGEVKSGIADIEVTMVESHANLKIRSKKR-----------PKQLLKLVSGLHTMRLTILHLNVTTTGEIVLYSLSVKVEDDCKLGSVDDIAEAVYQTLDRIQQE 972 KN+EE ENQRMTHIAVERNRR+QMN++LSVLRSLMP + +GDQASI+GGAI+F+KELE +L L AQK K D+ G P S+FF + + N +T VK+ + D+EVT++E+HAN++I S++R P QL KLV+ L ++ L+ILHL+VTT +YS+S KVE+ C+L SVDDIA AV+ L I++E Sbjct: 78 KNEEEAENQRMTHIAVERNRRRQMNQHLSVLRSLMPQPFAHKGDQASIVGGAIDFIKELEHKLLSLEAQKHHNAKLNQSVTSSTSQDSNGEQENPHQPSSLSLSQFF----LHSYDPSQENRNGST-----SSVKTPMEDLEVTLIETHANIRILSRRRGFRWSTLATTKPPQLSKLVASLQSLSLSILHLSVTTLDNYAIYSISAKVEESCQLSSVDDIAGAVHHMLSIIEEE 302
BLAST of LR48_mrnaVigan10g092200 vs. DB:Swiss
Match: BH070_ARATH (Transcription factor bHLH70 OS=Arabidopsis thaliana OX=3702 GN=BHLH70 PE=2 SV=1) HSP 1 Score: 171.4 bits (433), Expect = 3.671e-49 Identity = 94/201 (46.77%), Postives = 129/201 (64.18%), Query Frame = 1 Query: 358 NKEEIENQRMTHIAVERNRRKQMNEYLSVLRSLMPDSYIQRGDQASIIGGAINFVKELEQRLHFLGAQKEGERKSDAGGATNMPFSEFFAFPQYSTXXXXXXXDNSATVGEDVGEVKSGIADIEVTMVESHANLKIRSKKRPKQLLKLVSGLHTMRLTILHLNVTT-TGEIVLYSLSVKVEDDCKLGSVDDIAEAVYQTLD 957 N EEIE+QRMTHIAVERNRR+QMN +L+ LRS++P SYIQRGDQASI+GGAI+FVK LEQ+L L AQK ++ D P+ ++ + A+ E+ +S IE T++ESH NLKI+ ++ QLL+ + L +R T+LHLN+T+ T V YS ++K+ED+C LGS D+I A+ Q D Sbjct: 184 NIEEIESQRMTHIAVERNRRRQMNVHLNSLRSIIPSSYIQRGDQASIVGGAIDFVKILEQQLQSLEAQKRSQQSDDNKEQ----------IPEDNSLRNISSNKLRASNKEE----QSSKLKIEATVIESHVNLKIQCTRKQGQLLRSIILLEKLRFTVLHLNITSPTNTSVSYSFNLKMEDECNLGSADEITAAIRQIFD 370
BLAST of LR48_mrnaVigan10g092200 vs. DB:Swiss
Match: BH067_ARATH (Transcription factor bHLH67 OS=Arabidopsis thaliana OX=3702 GN=BHLH67 PE=2 SV=1) HSP 1 Score: 161.384 bits (407), Expect = 1.770e-45 Identity = 94/202 (46.53%), Postives = 136/202 (67.33%), Query Frame = 1 Query: 355 KNKEEIENQRMTHIAVERNRRKQMNEYLSVLRSLMPDSYIQRGDQASIIGGAINFVKELEQRLHFLGAQKEGERKSDAGGATNMPFSEFFAFPQYSTXXXXXXXDNSATVGEDVGEVKSGIADIEVTMVESHANLKIRSKKRPKQLLKLVSGLHTMRLTILHLNVTT-TGEIVLYSLSVKVEDDCKLGSVDDIAEAVYQTLD 957 KN EEIENQR+ HIAVERNRR+QMNE+++ LR+L+P SYIQRGDQASI+GGAIN+VK LEQ + L +QK +++S++ N A S G S++ T ED ++ I IE T++++H +LK++ +K+ QLLK + L ++LT+LHLN+TT + V YS ++K+ED+C L S D+I AV++ D Sbjct: 168 KNNEEIENQRINHIAVERNRRRQMNEHINSLRALLPPSYIQRGDQASIVGGAINYVKVLEQIIQSLESQKRTQQQSNSEVVEN-------ALNHLS----GISSNDLWTTLED----QTCIPKIEATVIQNHVSLKVQCEKKQGQLLKGIISLEKLKLTVLHLNITTSSHSSVSYSFNLKMEDECDLESADEITAAVHRIFD 354
BLAST of LR48_mrnaVigan10g092200 vs. DB:Swiss
Match: MUTE_ARATH (Transcription factor MUTE OS=Arabidopsis thaliana OX=3702 GN=MUTE PE=2 SV=1) HSP 1 Score: 118.242 bits (295), Expect = 1.301e-30 Identity = 73/192 (38.02%), Postives = 101/192 (52.60%), Query Frame = 1 Query: 385 MTHIAVERNRRKQMNEYLSVLRSLMPDSYIQRGDQASIIGGAINFVKELEQRLHFLGAQKEG---------------ERKSDAGGATNMPFSEFFAFPQYSTXXXXXXXDNSATVGEDVGEVKSGIADIEVTMVESHANLKIRSKKRPKQLLKLVSGLHTMRLTILHLNVTTTGEIVLYSLSVKVEDDCKLG 915 M+HIAVERNRR+QMNE+L LRSL P YI+RGDQASIIGG I F+KEL+Q + L ++K E S T +PFS ST G NS A++E + S+ L++ S++ QL+K++S L + +LHLN+++ E VLY VK+ +C L Sbjct: 1 MSHIAVERNRRRQMNEHLKSLRSLTPCFYIKRGDQASIIGGVIEFIKELQQLVQVLESKKRRKTLNRPSFPYDHQTIEPSSLGAATTRVPFSRIENVMTTSTFKEVGACCNSPH------------ANVEAKISGSNVVLRVVSRRIVGQLVKIISVLEKLSFQVLHLNISSMEETVLYFFVVKIGLECHLS 180
BLAST of LR48_mrnaVigan10g092200 vs. DB:Swiss
Match: SPCH_ARATH (Transcription factor SPEECHLESS OS=Arabidopsis thaliana OX=3702 GN=SPCH PE=1 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 4.143e-20 Identity = 40/63 (63.49%), Postives = 53/63 (84.13%), Query Frame = 1 Query: 379 QRMTHIAVERNRRKQMNEYLSVLRSLMPDSYIQRGDQASIIGGAINFVKELEQRLHFLGAQKE 567 Q+M+H+ VERNRRKQMNE+L+VLRSLMP Y++RGDQASIIGG + ++ EL+Q L L A+K+ Sbjct: 100 QKMSHVTVERNRRKQMNEHLTVLRSLMPCFYVKRGDQASIIGGVVEYISELQQVLQSLEAKKQ 162 HSP 2 Score: 62.3882 bits (150), Expect = 1.218e-9 Identity = 32/94 (34.04%), Postives = 57/94 (60.64%), Query Frame = 1 Query: 673 SATVGEDVGEVKSGIADIEVTMVESHANLKIRSKKRPKQLLKLVSGLHTMRLTILHLNVTTTGEIVLYSLSVKVEDDCKLGSVDDIAEAVYQTL 954 S+ + E V KS +AD+EV ++ LK S K P Q++K+++ L + L IL +N+ T E +L S ++K+ +C+L S +++A+ + QT Sbjct: 271 SSVINELVANSKSALADVEVKFSGANVLLKTVSHKIPGQVMKIIAALEDLALEILQVNINTVDETMLNSFTIKIGIECQL-SAEELAQQIQQTF 363 The following BLAST results are available for this feature:
BLAST of LR48_mrnaVigan10g092200 vs. DB:Swiss
Analysis Date: 2020-05-21 (BLAST: V. angularis Jingnong 6 genome v1.1) Total hits: 10
InterPro
Analysis Name: InterProScan: Vigna angularis Jingnong 6 genome v1.1
Date Performed: 2020-05-21
Sequences
The
following sequences are available for this feature:
mRNA sequence >LR48_mrnaVigan10g092200_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan10g092200_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan10g092200; organism=Vigna angularis; type=mRNA; length=1208bpback to top protein sequence of LR48_mrnaVigan10g092200_Va_Jingnong6_v1.1 >LR48_mrnaVigan10g092200_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan10g092200_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan10g092200_Va_Jingnong6_v1.1; organism=Vigna angularis; type=polypeptide; length=328bpback to top mRNA from alignment at Chr_10-CM003380.1:11309795..11311002+ Legend: polypeptidestart_codonexonCDSintronstop_codon Hold the cursor over a type above to highlight its positions in the sequence below.>LR48_mrnaVigan10g092200_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan10g092200_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan10g092200; organism=Vigna angularis; type=mRNA; length=1208bp; location=Sequence derived from: Chr_10-CM003380.1:11309795..11311002+ (Vigna angularisback to top Coding sequence (CDS) from alignment at Chr_10-CM003380.1:11309795..11311002+ >LR48_mrnaVigan10g092200_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan10g092200_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan10g092200; organism=Vigna angularis; type=CDS; length=987bp; location=Sequence derived from: Chr_10-CM003380.1:11309795..11311002+ (Vigna angularisback to top |