LR48_mrnaVigan10g096700
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following start_codon feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
Homology
BLAST of LR48_mrnaVigan10g096700 vs. DB:Swiss
Match: FAO2_LOTJA (Long-chain-alcohol oxidase FAO2 OS=Lotus japonicus OX=34305 GN=FAO2 PE=2 SV=1) HSP 1 Score: 198.364 bits (503), Expect = 1.799e-59 Identity = 96/127 (75.59%), Postives = 106/127 (83.46%), Query Frame = 1 Query: 1 MDTVCRRIGVTERCKKQGFHNQILVQGCEKMGLKVESVVTNSSADHYCGSCCYGCKTGDKKDTDSTWLVDAVGNDAVILSGCKTER--FILEDGNGGMKKKKCSGVIAAATWRSKVTKKLLIEFKVT 375 MDTVCRRIGVTE C K+ F NQIL QGC K+G KVE V NSSADHYCGSCCYGC+TGDKK T+STWLVDAVGN AVIL+GCK E+ F L+DG+ G K+K CSGVIA+ATWRSKVTKKL IE KVT Sbjct: 351 MDTVCRRIGVTENCNKESFQNQILRQGCAKIGFKVEPVAINSSADHYCGSCCYGCRTGDKKGTESTWLVDAVGNGAVILTGCKAEKLNFTLKDGDNGTKRKTCSGVIASATWRSKVTKKLQIESKVT 477
BLAST of LR48_mrnaVigan10g096700 vs. DB:Swiss
Match: FAO1_LOTJA (Long-chain-alcohol oxidase FAO1 OS=Lotus japonicus OX=34305 GN=FAO1 PE=1 SV=1) HSP 1 Score: 154.066 bits (388), Expect = 2.682e-43 Identity = 76/126 (60.32%), Postives = 94/126 (74.60%), Query Frame = 1 Query: 1 MDTVCRRIGVTERCKKQGFHNQILVQGCEKMGLKVESVVTNSSADHYCGSCCYGCKTGDKKDTDSTWLVDAVGNDAVILSGCKTERFILEDG-NGGMKKKKCSGVIAAATWRSKVTKKLLIEFKVT 375 M+TVC RIGVTE C +GF NQ+L +GC+ +GLKV+ V NSS +H+CGSC YGC G+K+ T TWLVDAV N AVI++GCK ERF+LE+ NG +KKKC GV+A A S+VT KL IE KVT Sbjct: 349 METVCERIGVTESCTHEGFQNQVLRKGCQNLGLKVDYVPRNSSGNHFCGSCGYGCPKGEKQGTQDTWLVDAVENGAVIITGCKAERFLLENNRNGSGRKKKCLGVLAKAL-SSRVTMKLQIEAKVT 473
BLAST of LR48_mrnaVigan10g096700 vs. DB:Swiss
Match: FAO3_ARATH (Long-chain-alcohol oxidase FAO3 OS=Arabidopsis thaliana OX=3702 GN=FAO3 PE=1 SV=1) HSP 1 Score: 145.591 bits (366), Expect = 3.328e-40 Identity = 73/127 (57.48%), Postives = 90/127 (70.87%), Query Frame = 1 Query: 1 MDTVCRRIGVTERCKKQGFHNQILVQGCEKMGLKVESVVTNSSADHYCGSCCYGCKTGDKKDTDSTWLVDAVGNDAVILSGCKTERFILED--GNGGMKKKKCSGVIAAATWRSKVTKKLLIEFKVT 375 M+ V +R+GVTE+C+ + F NQIL +GCE +G VE+V NSS HYCGSC YGC+ GDKK +D TWLVDAVG+ AVIL+GCK ERFILE N G K+ KC GV+A + + K L IE KVT Sbjct: 345 MEVVWKRMGVTEKCELESFQNQILRKGCENLGFNVENVPRNSSESHYCGSCGYGCRQGDKKGSDRTWLVDAVGHGAVILTGCKAERFILEKNGSNKGGKQMKCLGVMAKSL-NGNIAKMLKIEAKVT 470
BLAST of LR48_mrnaVigan10g096700 vs. DB:Swiss
Match: FAO4B_ARATH (Long-chain-alcohol oxidase FAO4B OS=Arabidopsis thaliana OX=3702 GN=FAO4B PE=2 SV=2) HSP 1 Score: 145.206 bits (365), Expect = 4.079e-40 Identity = 73/127 (57.48%), Postives = 89/127 (70.08%), Query Frame = 1 Query: 1 MDTVCRRIGVTERCKKQGFHNQILVQGCEKMGLKVESVVTNSSADHYCGSCCYGCKTGDKKDTDSTWLVDAVGNDAVILSGCKTERFILEDG--NGGMKKKKCSGVIAAATWRSKVTKKLLIEFKVT 375 MD V RIGVTERC K GF NQ+L +GCE++GL+VESV NS DHYCG C YGC+ G K TD TWLVDAV N AVIL+G K ERF+L D + +KK+C GV A++ K+ KK +IE +VT Sbjct: 350 MDEVTIRIGVTERCVKHGFQNQVLRKGCERLGLQVESVPRNSPEDHYCGLCGYGCRAGAKNGTDQTWLVDAVENGAVILTGIKAERFVLVDNTSSSNERKKRCVGVFASSVG-GKIGKKFIIEARVT 475
BLAST of LR48_mrnaVigan10g096700 vs. DB:Swiss
Match: FAO1_ARATH (Long-chain-alcohol oxidase FAO1 OS=Arabidopsis thaliana OX=3702 GN=FAO1 PE=3 SV=2) HSP 1 Score: 137.502 bits (345), Expect = 2.216e-37 Identity = 70/130 (53.85%), Postives = 89/130 (68.46%), Query Frame = 1 Query: 1 MDTVCRRIGVTERCKKQGFHNQILVQGCEKMGLKVESVVTNSSADHYCGSCCYGCKTGDKKDTDSTWLVDAVGNDAVILSGCKTERFILEDGNGGM-----KKKKCSGVIAAATWRSKVTKKLLIEFKVT 375 M VC+R+GVTE+ ++GF NQIL +GCEK+GL V V NS+ HYCGSC YGC TG+K+ TDSTWLVDAV N+AVIL+ CK E+ IL D + ++K+C GV AA+ + KKL I KVT Sbjct: 358 MGIVCKRLGVTEKIIREGFQNQILRKGCEKLGLDVTIVPRNSTEKHYCGSCSYGCPTGEKRGTDSTWLVDAVNNNAVILTQCKAEKLILADNDANKREESGRRKRCLGV--AASLSHQTRKKLQINAKVT 485
BLAST of LR48_mrnaVigan10g096700 vs. DB:Swiss
Match: FAO4A_ARATH (Long-chain-alcohol oxidase FAO4A OS=Arabidopsis thaliana OX=3702 GN=FAO4A PE=3 SV=2) HSP 1 Score: 101.293 bits (251), Expect = 1.252e-24 Identity = 51/108 (47.22%), Postives = 72/108 (66.67%), Query Frame = 1 Query: 1 MDTVCRRIGVTERCKKQGFHNQILVQGCEKMGLKVESVVTNSSADHYCGSCCYGCKTGDKKDTDSTWLVDAVGND-AVILSGCKTERFILEDGNGGMKKKKCSGVIAA 321 MD VC+R+GV ++GF+N++L +GCEK+GL V+++ N+ +DHYCG CC GCK G K+ T TWLVD V +D +IL GC+ + + G KKKK +GV A Sbjct: 336 MDVVCKRMGVQCGFVEEGFNNEVLRKGCEKLGLPVKNIPRNAPSDHYCGFCCLGCKKGQKQGTSETWLVDLVESDNGLILPGCQATEVMYDCEQG--KKKKATGVAFA 441 The following BLAST results are available for this feature:
BLAST of LR48_mrnaVigan10g096700 vs. DB:Swiss
Analysis Date: 2020-05-21 (BLAST: V. angularis Jingnong 6 genome v1.1) Total hits: 6
InterPro
Analysis Name: InterProScan: Vigna angularis Jingnong 6 genome v1.1
Date Performed: 2020-05-21
Sequences
The
following sequences are available for this feature:
mRNA sequence >LR48_mrnaVigan10g096700_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan10g096700_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan10g096700; organism=Vigna angularis; type=mRNA; length=402bpback to top protein sequence of LR48_mrnaVigan10g096700_Va_Jingnong6_v1.1 >LR48_mrnaVigan10g096700_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan10g096700_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan10g096700_Va_Jingnong6_v1.1; organism=Vigna angularis; type=polypeptide; length=133bpback to top mRNA from alignment at Chr_10-CM003380.1:11841911..11842312+ Legend: polypeptidestart_codonexonCDSstop_codon Hold the cursor over a type above to highlight its positions in the sequence below.>LR48_mrnaVigan10g096700_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan10g096700_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan10g096700; organism=Vigna angularis; type=mRNA; length=402bp; location=Sequence derived from: Chr_10-CM003380.1:11841911..11842312+ (Vigna angularisback to top Coding sequence (CDS) from alignment at Chr_10-CM003380.1:11841911..11842312+ >LR48_mrnaVigan10g096700_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan10g096700_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan10g096700; organism=Vigna angularis; type=CDS; length=402bp; location=Sequence derived from: Chr_10-CM003380.1:11841911..11842312+ (Vigna angularisback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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