LR48_mrnaVigan10g096700

Transcript Overview
NameLR48_mrnaVigan10g096700
Unique NameLR48_mrnaVigan10g096700_Va_Jingnong6_v1.1
TypemRNA
OrganismVigna angularis (Adzuki bean, red mung bean, azuki)
Sequence length402
Producthypothetical protein
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr_10-CM003380.1supercontigChr_10-CM003380.1:11841911..11842312 +Vigna angularis Jingnong 6 genome v1.1n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Vigna angularis Jingnong 6 genome v1.12020-05-19
InterProScan: Vigna angularis Jingnong 6 genome v1.12020-05-21
BLAST: V. angularis Jingnong 6 genome v1.12020-05-21
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
ascaR261Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ascaR277Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
asasL099Vigna angularis Jingnong 6 genome v1.1Vigna angularis
anasL0489Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anasL0686Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anasL0745Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anasL0918Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anasL0920Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anasL1230Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ascaiR342Cicer arietinum ICC 4958 genome v2Cicer arietinum
ascaiR345Cicer arietinum ICC 4958 genome v2Cicer arietinum
ascaiR353Cicer arietinum ICC 4958 genome v2Cicer arietinum
asccR0434Cajanus cajan Asha genome v1.0Cajanus cajan
asccR0455Cajanus cajan Asha genome v1.0Cajanus cajan
ascrR314Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
ascrR319Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
aspsR285Pisum sativum Cameor genome v1aPisum sativum
aspsR296Pisum sativum Cameor genome v1aPisum sativum
aspvR315Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
aspvR320Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
asvuR207Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
asvuR262Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
asvuR265Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
astifR292Vicia faba cv. Tiffany genome v1.0Vicia faba
astifR307Vicia faba cv. Tiffany genome v1.0Vicia faba
astifR309Vicia faba cv. Tiffany genome v1.0Vicia faba
asvfhR302Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
asvfhR316Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
asvfhR317Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
asvrvR195Vigna radiata cv. VC1973A genome v6.0Vigna radiata
asvrvR252Vigna radiata cv. VC1973A genome v6.0Vigna radiata
asvssR324Vicia sativa cv. Studenica genome v1.0Vicia sativa
asvssR326Vicia sativa cv. Studenica genome v1.0Vicia sativa
asvssR334Vicia sativa cv. Studenica genome v1.0Vicia sativa
asvuaR241Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
asvuaR250Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
ascanR237Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
ascanR248Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
gene-LR48_Vigan10g096700gene-LR48_Vigan10g096700_Va_Jingnong6_v1.1Vigna angularisgene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
LR48_mrnaVigan10g096700LR48_mrnaVigan10g096700_Va_Jingnong6_v1.1-proteinVigna angularispolypeptide
LR48_mrnaVigan10g096700_Va_Jingnong6_v1.1LR48_mrnaVigan10g096700_Va_Jingnong6_v1.1Vigna angularispolypeptide


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
LR48_mrnaVigan10g096700_Va_Jingnong6_v1.1-start_codon-Chr_10-CM003380.1_Va_Jingnong6_v1.1-1589992784:11841911..11841913LR48_mrnaVigan10g096700_Va_Jingnong6_v1.1-start_codon-Chr_10-CM003380.1_Va_Jingnong6_v1.1-1589992784:11841911..11841913Vigna angularisstart_codon


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
LR48_mrnaVigan10g096700_Va_Jingnong6_v1.1-exon-Chr_10-CM003380.1_Va_Jingnong6_v1.1-1589992784:11841911..11842312LR48_mrnaVigan10g096700_Va_Jingnong6_v1.1-exon-Chr_10-CM003380.1_Va_Jingnong6_v1.1-1589992784:11841911..11842312Vigna angularisexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
LR48_mrnaVigan10g096700_Va_Jingnong6_v1.1-CDS-Chr_10-CM003380.1_Va_Jingnong6_v1.1-1589992784:11841911..11842312LR48_mrnaVigan10g096700_Va_Jingnong6_v1.1-CDS-Chr_10-CM003380.1_Va_Jingnong6_v1.1-1589992784:11841911..11842312Vigna angularisCDS


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
LR48_mrnaVigan10g096700_Va_Jingnong6_v1.1-stop_codon-Chr_10-CM003380.1_Va_Jingnong6_v1.1-1589992784:11842310..11842312LR48_mrnaVigan10g096700_Va_Jingnong6_v1.1-stop_codon-Chr_10-CM003380.1_Va_Jingnong6_v1.1-1589992784:11842310..11842312Vigna angularisstop_codon


Homology
BLAST of LR48_mrnaVigan10g096700 vs. DB:Swiss
Match: FAO2_LOTJA (Long-chain-alcohol oxidase FAO2 OS=Lotus japonicus OX=34305 GN=FAO2 PE=2 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 1.799e-59
Identity = 96/127 (75.59%), Postives = 106/127 (83.46%), Query Frame = 1
Query:    1 MDTVCRRIGVTERCKKQGFHNQILVQGCEKMGLKVESVVTNSSADHYCGSCCYGCKTGDKKDTDSTWLVDAVGNDAVILSGCKTER--FILEDGNGGMKKKKCSGVIAAATWRSKVTKKLLIEFKVT 375
            MDTVCRRIGVTE C K+ F NQIL QGC K+G KVE V  NSSADHYCGSCCYGC+TGDKK T+STWLVDAVGN AVIL+GCK E+  F L+DG+ G K+K CSGVIA+ATWRSKVTKKL IE KVT
Sbjct:  351 MDTVCRRIGVTENCNKESFQNQILRQGCAKIGFKVEPVAINSSADHYCGSCCYGCRTGDKKGTESTWLVDAVGNGAVILTGCKAEKLNFTLKDGDNGTKRKTCSGVIASATWRSKVTKKLQIESKVT 477          
BLAST of LR48_mrnaVigan10g096700 vs. DB:Swiss
Match: FAO1_LOTJA (Long-chain-alcohol oxidase FAO1 OS=Lotus japonicus OX=34305 GN=FAO1 PE=1 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 2.682e-43
Identity = 76/126 (60.32%), Postives = 94/126 (74.60%), Query Frame = 1
Query:    1 MDTVCRRIGVTERCKKQGFHNQILVQGCEKMGLKVESVVTNSSADHYCGSCCYGCKTGDKKDTDSTWLVDAVGNDAVILSGCKTERFILEDG-NGGMKKKKCSGVIAAATWRSKVTKKLLIEFKVT 375
            M+TVC RIGVTE C  +GF NQ+L +GC+ +GLKV+ V  NSS +H+CGSC YGC  G+K+ T  TWLVDAV N AVI++GCK ERF+LE+  NG  +KKKC GV+A A   S+VT KL IE KVT
Sbjct:  349 METVCERIGVTESCTHEGFQNQVLRKGCQNLGLKVDYVPRNSSGNHFCGSCGYGCPKGEKQGTQDTWLVDAVENGAVIITGCKAERFLLENNRNGSGRKKKCLGVLAKAL-SSRVTMKLQIEAKVT 473          
BLAST of LR48_mrnaVigan10g096700 vs. DB:Swiss
Match: FAO3_ARATH (Long-chain-alcohol oxidase FAO3 OS=Arabidopsis thaliana OX=3702 GN=FAO3 PE=1 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 3.328e-40
Identity = 73/127 (57.48%), Postives = 90/127 (70.87%), Query Frame = 1
Query:    1 MDTVCRRIGVTERCKKQGFHNQILVQGCEKMGLKVESVVTNSSADHYCGSCCYGCKTGDKKDTDSTWLVDAVGNDAVILSGCKTERFILED--GNGGMKKKKCSGVIAAATWRSKVTKKLLIEFKVT 375
            M+ V +R+GVTE+C+ + F NQIL +GCE +G  VE+V  NSS  HYCGSC YGC+ GDKK +D TWLVDAVG+ AVIL+GCK ERFILE    N G K+ KC GV+A +     + K L IE KVT
Sbjct:  345 MEVVWKRMGVTEKCELESFQNQILRKGCENLGFNVENVPRNSSESHYCGSCGYGCRQGDKKGSDRTWLVDAVGHGAVILTGCKAERFILEKNGSNKGGKQMKCLGVMAKSL-NGNIAKMLKIEAKVT 470          
BLAST of LR48_mrnaVigan10g096700 vs. DB:Swiss
Match: FAO4B_ARATH (Long-chain-alcohol oxidase FAO4B OS=Arabidopsis thaliana OX=3702 GN=FAO4B PE=2 SV=2)

HSP 1 Score: 145.206 bits (365), Expect = 4.079e-40
Identity = 73/127 (57.48%), Postives = 89/127 (70.08%), Query Frame = 1
Query:    1 MDTVCRRIGVTERCKKQGFHNQILVQGCEKMGLKVESVVTNSSADHYCGSCCYGCKTGDKKDTDSTWLVDAVGNDAVILSGCKTERFILEDG--NGGMKKKKCSGVIAAATWRSKVTKKLLIEFKVT 375
            MD V  RIGVTERC K GF NQ+L +GCE++GL+VESV  NS  DHYCG C YGC+ G K  TD TWLVDAV N AVIL+G K ERF+L D   +   +KK+C GV A++    K+ KK +IE +VT
Sbjct:  350 MDEVTIRIGVTERCVKHGFQNQVLRKGCERLGLQVESVPRNSPEDHYCGLCGYGCRAGAKNGTDQTWLVDAVENGAVILTGIKAERFVLVDNTSSSNERKKRCVGVFASSVG-GKIGKKFIIEARVT 475          
BLAST of LR48_mrnaVigan10g096700 vs. DB:Swiss
Match: FAO1_ARATH (Long-chain-alcohol oxidase FAO1 OS=Arabidopsis thaliana OX=3702 GN=FAO1 PE=3 SV=2)

HSP 1 Score: 137.502 bits (345), Expect = 2.216e-37
Identity = 70/130 (53.85%), Postives = 89/130 (68.46%), Query Frame = 1
Query:    1 MDTVCRRIGVTERCKKQGFHNQILVQGCEKMGLKVESVVTNSSADHYCGSCCYGCKTGDKKDTDSTWLVDAVGNDAVILSGCKTERFILEDGNGGM-----KKKKCSGVIAAATWRSKVTKKLLIEFKVT 375
            M  VC+R+GVTE+  ++GF NQIL +GCEK+GL V  V  NS+  HYCGSC YGC TG+K+ TDSTWLVDAV N+AVIL+ CK E+ IL D +        ++K+C GV  AA+   +  KKL I  KVT
Sbjct:  358 MGIVCKRLGVTEKIIREGFQNQILRKGCEKLGLDVTIVPRNSTEKHYCGSCSYGCPTGEKRGTDSTWLVDAVNNNAVILTQCKAEKLILADNDANKREESGRRKRCLGV--AASLSHQTRKKLQINAKVT 485          
BLAST of LR48_mrnaVigan10g096700 vs. DB:Swiss
Match: FAO4A_ARATH (Long-chain-alcohol oxidase FAO4A OS=Arabidopsis thaliana OX=3702 GN=FAO4A PE=3 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 1.252e-24
Identity = 51/108 (47.22%), Postives = 72/108 (66.67%), Query Frame = 1
Query:    1 MDTVCRRIGVTERCKKQGFHNQILVQGCEKMGLKVESVVTNSSADHYCGSCCYGCKTGDKKDTDSTWLVDAVGND-AVILSGCKTERFILEDGNGGMKKKKCSGVIAA 321
            MD VC+R+GV     ++GF+N++L +GCEK+GL V+++  N+ +DHYCG CC GCK G K+ T  TWLVD V +D  +IL GC+    + +   G  KKKK +GV  A
Sbjct:  336 MDVVCKRMGVQCGFVEEGFNNEVLRKGCEKLGLPVKNIPRNAPSDHYCGFCCLGCKKGQKQGTSETWLVDLVESDNGLILPGCQATEVMYDCEQG--KKKKATGVAFA 441          
The following BLAST results are available for this feature:
BLAST of LR48_mrnaVigan10g096700 vs. DB:Swiss
Analysis Date: 2020-05-21 (BLAST: V. angularis Jingnong 6 genome v1.1)
Total hits: 6
Match NameE-valueIdentityDescription
FAO2_LOTJA1.799e-5975.59Long-chain-alcohol oxidase FAO2 OS=Lotus japonicus... [more]
FAO1_LOTJA2.682e-4360.32Long-chain-alcohol oxidase FAO1 OS=Lotus japonicus... [more]
FAO3_ARATH3.328e-4057.48Long-chain-alcohol oxidase FAO3 OS=Arabidopsis tha... [more]
FAO4B_ARATH4.079e-4057.48Long-chain-alcohol oxidase FAO4B OS=Arabidopsis th... [more]
FAO1_ARATH2.216e-3753.85Long-chain-alcohol oxidase FAO1 OS=Arabidopsis tha... [more]
FAO4A_ARATH1.252e-2447.22Long-chain-alcohol oxidase FAO4A OS=Arabidopsis th... [more]
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InterPro
Analysis Name: InterProScan: Vigna angularis Jingnong 6 genome v1.1
Date Performed: 2020-05-21
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000172Glucose-methanol-choline oxidoreductase, N-terminalPFAMPF00732GMC_oxred_Ncoord: 4..112
e-value: 2.4E-26
score: 92.7
NoneNo IPR availablePROSITEPS51257PROKAR_LIPOPROTEINcoord: 1..28
score: 6.0

Sequences
The following sequences are available for this feature:

mRNA sequence

>LR48_mrnaVigan10g096700_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan10g096700_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan10g096700; organism=Vigna angularis; type=mRNA; length=402bp
ATGGACACGGTATGCAGAAGGATTGGTGTGACAGAGAGGTGCAAGAAACA
AGGGTTTCATAATCAAATTCTTGTACAAGGATGTGAGAAAATGGGCTTGA
AAGTAGAGTCAGTGGTTACAAATTCCTCAGCAGATCATTATTGTGGTTCA
TGTTGTTATGGTTGTAAAACAGGAGATAAGAAGGACACTGACTCTACTTG
GTTGGTTGACGCTGTAGGAAATGATGCAGTGATCCTCTCAGGATGTAAAA
CTGAGAGATTCATACTTGAAGATGGAAATGGtggaatgaagaaaaagaaa
tgttcAGGAGTTATTGCAGCAGCAACGTGGAGAAGTAAGGTAACAAAGAA
ACTCCTAATCGAATTCAAGGTAACTCCTaatcaaaaccctaattttgggt
aa
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protein sequence of LR48_mrnaVigan10g096700_Va_Jingnong6_v1.1

>LR48_mrnaVigan10g096700_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan10g096700_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan10g096700_Va_Jingnong6_v1.1; organism=Vigna angularis; type=polypeptide; length=133bp
MDTVCRRIGVTERCKKQGFHNQILVQGCEKMGLKVESVVTNSSADHYCGS
CCYGCKTGDKKDTDSTWLVDAVGNDAVILSGCKTERFILEDGNGGMKKKK
CSGVIAAATWRSKVTKKLLIEFKVTPNQNPNFG
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mRNA from alignment at Chr_10-CM003380.1:11841911..11842312+

Legend: polypeptidestart_codonexonCDSstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>LR48_mrnaVigan10g096700_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan10g096700_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan10g096700; organism=Vigna angularis; type=mRNA; length=402bp; location=Sequence derived from: Chr_10-CM003380.1:11841911..11842312+ (Vigna angularis
ATGGACACGGTATGCAGAAGGATTGGTGTGACAGAGAGGTGCAAGAAACA AGGGTTTCATAATCAAATTCTTGTACAAGGATGTGAGAAAATGGGCTTGA AAGTAGAGTCAGTGGTTACAAATTCCTCAGCAGATCATTATTGTGGTTCA TGTTGTTATGGTTGTAAAACAGGAGATAAGAAGGACACTGACTCTACTTG GTTGGTTGACGCTGTAGGAAATGATGCAGTGATCCTCTCAGGATGTAAAA CTGAGAGATTCATACTTGAAGATGGAAATGGtggaatgaagaaaaagaaa tgttcAGGAGTTATTGCAGCAGCAACGTGGAGAAGTAAGGTAACAAAGAA ACTCCTAATCGAATTCAAGGTAACTCCTaatcaaaaccctaattttgggt aa
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Coding sequence (CDS) from alignment at Chr_10-CM003380.1:11841911..11842312+

>LR48_mrnaVigan10g096700_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan10g096700_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan10g096700; organism=Vigna angularis; type=CDS; length=402bp; location=Sequence derived from: Chr_10-CM003380.1:11841911..11842312+ (Vigna angularis
ATGGACACGGTATGCAGAAGGATTGGTGTGACAGAGAGGTGCAAGAAACA
AGGGTTTCATAATCAAATTCTTGTACAAGGATGTGAGAAAATGGGCTTGA
AAGTAGAGTCAGTGGTTACAAATTCCTCAGCAGATCATTATTGTGGTTCA
TGTTGTTATGGTTGTAAAACAGGAGATAAGAAGGACACTGACTCTACTTG
GTTGGTTGACGCTGTAGGAAATGATGCAGTGATCCTCTCAGGATGTAAAA
CTGAGAGATTCATACTTGAAGATGGAAATGGtggaatgaagaaaaagaaa
tgttcAGGAGTTATTGCAGCAGCAACGTGGAGAAGTAAGGTAACAAAGAA
ACTCCTAATCGAATTCAAGGTAACTCCTaatcaaaaccctaattttgggt
aa
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR000172GMC_OxRdtase_N
Vocabulary: Molecular Function
TermDefinition
GO:0050660flavin adenine dinucleotide binding
GO:0016614oxidoreductase activity, acting on CH-OH group of donors
Vocabulary: Biological Process
TermDefinition
GO:0055114obsolete oxidation-reduction process