LR48_mrnaVigan10g174000

Transcript Overview
NameLR48_mrnaVigan10g174000
Unique NameLR48_mrnaVigan10g174000_Va_Jingnong6_v1.1
TypemRNA
OrganismVigna angularis (Adzuki bean, red mung bean, azuki)
Sequence length298
Producthypothetical protein
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr_10-CM003380.1supercontigChr_10-CM003380.1:24216413..24216710 +Vigna angularis Jingnong 6 genome v1.1n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Vigna angularis Jingnong 6 genome v1.12020-05-19
InterProScan: Vigna angularis Jingnong 6 genome v1.12020-05-21
BLAST: V. angularis Jingnong 6 genome v1.12020-05-21
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
gene-LR48_Vigan10g174000gene-LR48_Vigan10g174000_Va_Jingnong6_v1.1Vigna angularisgene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
LR48_mrnaVigan10g174000LR48_mrnaVigan10g174000_Va_Jingnong6_v1.1-proteinVigna angularispolypeptide
LR48_mrnaVigan10g174000_Va_Jingnong6_v1.1LR48_mrnaVigan10g174000_Va_Jingnong6_v1.1Vigna angularispolypeptide


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
LR48_mrnaVigan10g174000_Va_Jingnong6_v1.1-start_codon-Chr_10-CM003380.1_Va_Jingnong6_v1.1-1589992784:24216413..24216415LR48_mrnaVigan10g174000_Va_Jingnong6_v1.1-start_codon-Chr_10-CM003380.1_Va_Jingnong6_v1.1-1589992784:24216413..24216415Vigna angularisstart_codon


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
LR48_mrnaVigan10g174000_Va_Jingnong6_v1.1-exon-Chr_10-CM003380.1_Va_Jingnong6_v1.1-1589992784:24216413..24216570LR48_mrnaVigan10g174000_Va_Jingnong6_v1.1-exon-Chr_10-CM003380.1_Va_Jingnong6_v1.1-1589992784:24216413..24216570Vigna angularisexon
LR48_mrnaVigan10g174000_Va_Jingnong6_v1.1-exon-Chr_10-CM003380.1_Va_Jingnong6_v1.1-1589992784:24216686..24216710LR48_mrnaVigan10g174000_Va_Jingnong6_v1.1-exon-Chr_10-CM003380.1_Va_Jingnong6_v1.1-1589992784:24216686..24216710Vigna angularisexon


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
LR48_mrnaVigan10g174000_Va_Jingnong6_v1.1-intron-Chr_10-CM003380.1_Va_Jingnong6_v1.1-1589992784:24216571..24216685LR48_mrnaVigan10g174000_Va_Jingnong6_v1.1-intron-Chr_10-CM003380.1_Va_Jingnong6_v1.1-1589992784:24216571..24216685Vigna angularisintron


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS16414CDS16414_Va_Jingnong6_v1.1Vigna angularisCDS


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
LR48_mrnaVigan10g174000_Va_Jingnong6_v1.1-stop_codon-Chr_10-CM003380.1_Va_Jingnong6_v1.1-1589992784:24216708..24216710LR48_mrnaVigan10g174000_Va_Jingnong6_v1.1-stop_codon-Chr_10-CM003380.1_Va_Jingnong6_v1.1-1589992784:24216708..24216710Vigna angularisstop_codon


Homology
[Close]
BLAST of LR48_mrnaVigan10g174000 vs. DB:Swiss
Match: WTR13_ARATH (WAT1-related protein At2g37460 OS=Arabidopsis thaliana OX=3702 GN=At2g37460 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.590e-18
Identity = 36/52 (69.23%), Postives = 41/52 (78.85%), Query Frame = 1 
Query:    4 QGIVCSGMAYYIQGAVMKDRGSVFVTTFNPLCMVIVAIMGSFFLAEQMYLGR 159
             GIVCS +AYY+ G VMK RG VFVT F+PLCM+IVAIM +   AEQMYLGR
Sbjct:  259 SGIVCSALAYYVGGVVMKTRGPVFVTAFSPLCMIIVAIMSTIIFAEQMYLGR 310
[Close]
BLAST of LR48_mrnaVigan10g174000 vs. DB:Swiss
Match: WTR14_ARATH (WAT1-related protein At2g39510 OS=Arabidopsis thaliana OX=3702 GN=At2g39510 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 6.977e-18
Identity = 35/53 (66.04%), Postives = 43/53 (81.13%), Query Frame = 1 
Query:    7 GIVCSGMAYYIQGAVMKDRGSVFVTTFNPLCMVIVAIMGSFFLAEQMYLGRTV 165
            G++CSG+ YY+QG +MK RG VFVT FNPL MVIVAI+GS  LAE M+LGR +
Sbjct:  255 GVICSGIGYYVQGVIMKTRGPVFVTAFNPLSMVIVAILGSIILAEVMFLGRIL 307
[Close]
BLAST of LR48_mrnaVigan10g174000 vs. DB:Swiss
Match: WTR12_ARATH (WAT1-related protein At2g37450 OS=Arabidopsis thaliana OX=3702 GN=At2g37450 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.388e-17
Identity = 35/54 (64.81%), Postives = 39/54 (72.22%), Query Frame = 1 
Query:    4 QGIVCSGMAYYIQGAVMKDRGSVFVTTFNPLCMVIVAIMGSFFLAEQMYLGRTV 165
             GIVCS + YYI G VMK RG VFVT F PLCM++VAIM S    EQMYLGR +
Sbjct:  232 SGIVCSALGYYIGGVVMKTRGPVFVTAFKPLCMIVVAIMSSIIFDEQMYLGRAL 285
[Close]
BLAST of LR48_mrnaVigan10g174000 vs. DB:Swiss
Match: WTR31_ARATH (WAT1-related protein At4g08290 OS=Arabidopsis thaliana OX=3702 GN=At4g08290 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.820e-16
Identity = 32/50 (64.00%), Postives = 40/50 (80.00%), Query Frame = 1 
Query:    7 GIVCSGMAYYIQGAVMKDRGSVFVTTFNPLCMVIVAIMGSFFLAEQMYLG 156
            GIV SG+ YY+QG VMK RG VFVT FNPLCM++VA++ SF L EQ++ G
Sbjct:  261 GIVSSGITYYVQGMVMKTRGPVFVTAFNPLCMILVALIASFILHEQIHFG 310
[Close]
BLAST of LR48_mrnaVigan10g174000 vs. DB:Swiss
Match: WTR5_ARATH (WAT1-related protein At1g21890 OS=Arabidopsis thaliana OX=3702 GN=At1g21890 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.848e-16
Identity = 30/54 (55.56%), Postives = 42/54 (77.78%), Query Frame = 1 
Query:    4 QGIVCSGMAYYIQGAVMKDRGSVFVTTFNPLCMVIVAIMGSFFLAEQMYLGRTV 165
             G++CSG+AYY+QG VM++RG VFV TFNPLC+VI A +G   L+E ++LG  +
Sbjct:  265 SGVICSGVAYYVQGVVMRERGPVFVATFNPLCVVITAALGVVVLSESIHLGSVI 318
[Close]
BLAST of LR48_mrnaVigan10g174000 vs. DB:Swiss
Match: WTR38_ARATH (WAT1-related protein At5g07050 OS=Arabidopsis thaliana OX=3702 GN=At5g07050 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 7.581e-16
Identity = 33/51 (64.71%), Postives = 41/51 (80.39%), Query Frame = 1 
Query:    4 QGIVCSGMAYYIQGAVMKDRGSVFVTTFNPLCMVIVAIMGSFFLAEQMYLG 156
             GIV S ++YY+QG VMK RG VF T F+PL MVIVA+MGSF LAE+++LG
Sbjct:  271 SGIVASSISYYVQGIVMKKRGPVFATAFSPLMMVIVAVMGSFVLAEKIFLG 321
[Close]
BLAST of LR48_mrnaVigan10g174000 vs. DB:Swiss
Match: WTR8_ARATH (WAT1-related protein At1g44800 OS=Arabidopsis thaliana OX=3702 GN=At1g44800 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.144e-15
Identity = 29/54 (53.70%), Postives = 42/54 (77.78%), Query Frame = 1 
Query:    4 QGIVCSGMAYYIQGAVMKDRGSVFVTTFNPLCMVIVAIMGSFFLAEQMYLGRTV 165
             G+VCSG+AYYIQ  V+K RG VF T+F+P+CM+I A +G+  LAE+++LG  +
Sbjct:  256 SGVVCSGIAYYIQSIVIKQRGPVFTTSFSPMCMIITAFLGALVLAEKIHLGSII 309
[Close]
BLAST of LR48_mrnaVigan10g174000 vs. DB:Swiss
Match: WTR32_ARATH (WAT1-related protein At4g08300 OS=Arabidopsis thaliana OX=3702 GN=At4g08300 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.167e-15
Identity = 29/54 (53.70%), Postives = 42/54 (77.78%), Query Frame = 1 
Query:    4 QGIVCSGMAYYIQGAVMKDRGSVFVTTFNPLCMVIVAIMGSFFLAEQMYLGRTV 165
             G+VCSGMAYYIQ  V+++RG VF T+F+P+CM+I A +G   LAE+++LG  +
Sbjct:  259 SGVVCSGMAYYIQSIVIRERGPVFTTSFSPMCMIITAFLGVLVLAEKIHLGSII 312
[Close]
BLAST of LR48_mrnaVigan10g174000 vs. DB:Swiss
Match: WTR39_ARATH (WAT1-related protein At5g13670 OS=Arabidopsis thaliana OX=3702 GN=At5g13670 PE=2 SV=1)

HSP 1 Score: 62.003 bits (149), Expect = 4.129e-12
Identity = 27/53 (50.94%), Postives = 39/53 (73.58%), Query Frame = 1 
Query:    7 GIVCSGMAYYIQGAVMKDRGSVFVTTFNPLCMVIVAIMGSFFLAEQMYLGRTV 165
            G + SG+AYY+ G   K+RG VFV+ FNPL MV+VAI+ +F   E++Y+GR +
Sbjct:  257 GGLVSGLAYYVIGWASKERGPVFVSAFNPLSMVLVAILSTFVFLEKVYVGRVI 309
[Close]
BLAST of LR48_mrnaVigan10g174000 vs. DB:Swiss
Match: WTR15_ARATH (WAT1-related protein At2g40900 OS=Arabidopsis thaliana OX=3702 GN=At2g40900 PE=2 SV=1)

HSP 1 Score: 59.6918 bits (143), Expect = 2.753e-11
Identity = 28/50 (56.00%), Postives = 38/50 (76.00%), Query Frame = 1 
Query:    7 GIVCSGMAYYIQGAVMKDRGSVFVTTFNPLCMVIVAIMGSFFLAEQMYLG 156
            GI+ S +AYY+QG +M+ +G VFVT FNPL +VIV+IM  F L + +YLG
Sbjct:  252 GIMSSSIAYYVQGLMMQRKGPVFVTAFNPLIVVIVSIMSFFVLGQGIYLG 301
The following BLAST results are available for this feature:
BLAST of LR48_mrnaVigan10g174000 vs. DB:Swiss
Analysis Date: 2020-05-21 (BLAST: V. angularis Jingnong 6 genome v1.1)
Total hits: 10
Match NameE-valueIdentityDescription
WTR13_ARATH1.590e-1869.23WAT1-related protein At2g37460 OS=Arabidopsis thal... [more]
WTR14_ARATH6.977e-1866.04WAT1-related protein At2g39510 OS=Arabidopsis thal... [more]
WTR12_ARATH1.388e-1764.81WAT1-related protein At2g37450 OS=Arabidopsis thal... [more]
WTR31_ARATH1.820e-1664.00WAT1-related protein At4g08290 OS=Arabidopsis thal... [more]
WTR5_ARATH4.848e-1655.56WAT1-related protein At1g21890 OS=Arabidopsis thal... [more]
WTR38_ARATH7.581e-1664.71WAT1-related protein At5g07050 OS=Arabidopsis thal... [more]
WTR8_ARATH1.144e-1553.70WAT1-related protein At1g44800 OS=Arabidopsis thal... [more]
WTR32_ARATH1.167e-1553.70WAT1-related protein At4g08300 OS=Arabidopsis thal... [more]
WTR39_ARATH4.129e-1250.94WAT1-related protein At5g13670 OS=Arabidopsis thal... [more]
WTR15_ARATH2.753e-1156.00WAT1-related protein At2g40900 OS=Arabidopsis thal... [more]
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InterPro
Analysis Name: InterProScan: Vigna angularis Jingnong 6 genome v1.1
Date Performed: 2020-05-21
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSUPERFAMILY103481Multidrug resistance efflux transporter EmrEcoord: 3..54

Sequences
The following sequences are available for this feature:

mRNA sequence

>LR48_mrnaVigan10g174000_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan10g174000_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan10g174000; organism=Vigna angularis; type=mRNA; length=298bp
ATGCAGGGCATAGTTTGCTCAGGAATGGCTTATTACATCCAAGGAGCTGT
GATGAAAGATAGAGGTTCGGTCTTTGTGACAACTTTTAACCCTCTCTGCA
TGGTCATTGTGGCTATCATGGGCTCCTTCTTTCTGGCAGAACAAATGTAC
CTTGGAAGGTAATAAGAAATCCAATCACATGCCCAGAAAACTCACTAAAA
ACtcataagaaaattaaactaaataaatctGAAATTTTTTACAAGGCAAT
TGGTGCTATTGTGATTATTGTAGGACTGTATCTAATGGTGTCGGGTAA
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protein sequence of LR48_mrnaVigan10g174000_Va_Jingnong6_v1.1

>LR48_mrnaVigan10g174000_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan10g174000_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan10g174000_Va_Jingnong6_v1.1; organism=Vigna angularis; type=polypeptide; length=60bp
MQGIVCSGMAYYIQGAVMKDRGSVFVTTFNPLCMVIVAIMGSFFLAEQMY
LGRTVSNGVG
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mRNA from alignment at Chr_10-CM003380.1:24216413..24216710+

Legend: polypeptidestart_codonexonCDSintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>LR48_mrnaVigan10g174000_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan10g174000_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan10g174000; organism=Vigna angularis; type=mRNA; length=298bp; location=Sequence derived from: Chr_10-CM003380.1:24216413..24216710+ (Vigna angularis
ATGCAGGGCATAGTTTGCTCAGGAATGGCTTATTACATCCAAGGAGCTGT
GATGAAAGATAGAGGTTCGGTCTTTGTGACAACTTTTAACCCTCTCTGCA
TGGTCATTGTGGCTATCATGGGCTCCTTCTTTCTGGCAGAACAAATGTAC
CTTGGAAGGTAATAAGAAATCCAATCACATGCCCAGAAAACTCACTAAAA
ACtcataagaaaattaaactaaataaatctGAAATTTTTTACAAGGCAAT
TGGTGCTATTGTGATTATTGTAGGACTGTATCTAATGGTGTCGGGTAA
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Coding sequence (CDS) from alignment at Chr_10-CM003380.1:24216413..24216710+

>LR48_mrnaVigan10g174000_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan10g174000_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan10g174000; organism=Vigna angularis; type=CDS; length=183bp; location=Sequence derived from: Chr_10-CM003380.1:24216413..24216710+ (Vigna angularis
ATGCAGGGCATAGTTTGCTCAGGAATGGCTTATTACATCCAAGGAGCTGT
GATGAAAGATAGAGGTTCGGTCTTTGTGACAACTTTTAACCCTCTCTGCA
TGGTCATTGTGGCTATCATGGGCTCCTTCTTTCTGGCAGAACAAATGTAC
CTTGGAAGGACTGTATCTAATGGTGTCGGGTAA
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