LR48_mrnaVigan09g030700
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following start_codon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
Homology
BLAST of LR48_mrnaVigan09g030700 vs. DB:Swiss
Match: SAU50_ARATH (Auxin-responsive protein SAUR50 OS=Arabidopsis thaliana OX=3702 GN=SAUR50 PE=1 SV=1) HSP 1 Score: 152.91 bits (385), Expect = 1.420e-48 Identity = 73/104 (70.19%), Postives = 89/104 (85.58%), Query Frame = 1 Query: 7 LKKSTKLPQAALIKQILKRCSSLGRK-----DDEGLRLDVPKGHFVVYVGENRSRYIVPISFLSRPEFQTLLHQAEEEFGFDHEKGLTIPCQQHVFESLTSMLR 303 +KK++KL Q A++KQILKRCSSLG+K D++ L LDVPKGHF VYVGENRSRYIVPISFL+ PEFQ+LL +AEEEFGFDH+ GLTIPC + VF++LTSM+R Sbjct: 4 MKKTSKLTQTAMLKQILKRCSSLGKKNGGGYDEDCLPLDVPKGHFPVYVGENRSRYIVPISFLTHPEFQSLLQRAEEEFGFDHDMGLTIPCDELVFQTLTSMIR 107
BLAST of LR48_mrnaVigan09g030700 vs. DB:Swiss
Match: SAU10_ARATH (Protein SMALL AUXIN UP-REGULATED RNA 10 OS=Arabidopsis thaliana OX=3702 GN=SAUR10 PE=2 SV=1) HSP 1 Score: 126.331 bits (316), Expect = 6.380e-38 Identity = 68/112 (60.71%), Postives = 78/112 (69.64%), Query Frame = 1 Query: 1 MALKKSTKL--PQAALIKQILKRCSSLGR---------KDDEGLRLDVPKGHFVVYVGENRSRYIVPISFLSRPEFQTLLHQAEEEFGFDHEKGLTIPCQQHVFESLTSMLR 303 MA+K+S+K QAA IKQI+KRCSSL + ++ L DVPKGHF VYVG NRSRYIVPIS+L EFQTLL AEEEFGFDH+ GLTIPC + F SL SM R Sbjct: 1 MAIKRSSKATSSQAASIKQIVKRCSSLRKMKNVNGCYYNQEDDLPQDVPKGHFPVYVGPNRSRYIVPISWLHHSEFQTLLRLAEEEFGFDHDMGLTIPCDEVFFRSLISMFR 112
BLAST of LR48_mrnaVigan09g030700 vs. DB:Swiss
Match: SAU50_HELAN (Auxin-responsive protein SAUR50 OS=Helianthus annuus OX=4232 PE=3 SV=1) HSP 1 Score: 122.865 bits (307), Expect = 1.095e-36 Identity = 60/99 (60.61%), Postives = 74/99 (74.75%), Query Frame = 1 Query: 7 LKKSTKLPQAALIKQILKRCSSLGRK-DDEGLRLDVPKGHFVVYVGENRSRYIVPISFLSRPEFQTLLHQAEEEFGFDHEKGLTIPCQQHVFESLTSML 300 ++KS K QA IK+I+K+CSS G+ DD GL DVPKGHFVVYVGE R+RYIVPIS L P FQ LL ++EEEFGF+H+ G+ IPCQ+ F S SM+ Sbjct: 4 IRKSHKQTQALAIKKIIKKCSSFGKNNDDSGLPNDVPKGHFVVYVGERRNRYIVPISCLDHPTFQDLLQRSEEEFGFNHDMGIIIPCQEVDFLSFFSMI 102
BLAST of LR48_mrnaVigan09g030700 vs. DB:Swiss
Match: AX15A_SOYBN (Auxin-induced protein 15A OS=Glycine max OX=3847 PE=2 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 3.496e-23 Identity = 38/67 (56.72%), Postives = 50/67 (74.63%), Query Frame = 1 Query: 106 DVPKGHFVVYVGENRSRYIVPISFLSRPEFQTLLHQAEEEFGFDHE-KGLTIPCQQHVFESLTSMLR 303 D PKG+ VYVGE R+++P+S+L++P FQ LL QAEEEFG+DH GLTIPC + VF+ +TS L Sbjct: 16 DAPKGYLAVYVGEKLKRFVIPVSYLNQPSFQDLLSQAEEEFGYDHPMGGLTIPCSEDVFQCITSCLN 82
BLAST of LR48_mrnaVigan09g030700 vs. DB:Swiss
Match: ARG7_VIGRR (Indole-3-acetic acid-induced protein ARG7 OS=Vigna radiata var. radiata OX=3916 GN=ARG7 PE=2 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 9.250e-23 Identity = 40/76 (52.63%), Postives = 53/76 (69.74%), Query Frame = 1 Query: 76 GRKDDEGLRLDVPKGHFVVYVGENRSRYIVPISFLSRPEFQTLLHQAEEEFGFDHE-KGLTIPCQQHVFESLTSML 300 R + LD PKG+ VYVGEN R+++P+S L++P FQ LL QAEEEFG+DH GLTIPC + +F+ +TS L Sbjct: 14 ARNEASSKVLDAPKGYLAVYVGENMKRFVIPVSHLNQPLFQDLLSQAEEEFGYDHPMGGLTIPCSEDLFQHITSCL 89
BLAST of LR48_mrnaVigan09g030700 vs. DB:Swiss
Match: AXX15_SOYBN (Auxin-induced protein X15 OS=Glycine max OX=3847 PE=2 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 2.949e-22 Identity = 36/68 (52.94%), Postives = 50/68 (73.53%), Query Frame = 1 Query: 103 LDVPKGHFVVYVGENRSRYIVPISFLSRPEFQTLLHQAEEEFGFDHE-KGLTIPCQQHVFESLTSMLR 303 +D PKG+ VYVGE R+++P+S++++P FQ LL QAEEEFG+DH GLTIPC + VF+ +T L Sbjct: 15 VDAPKGYLAVYVGEKMKRFVIPVSYMNQPSFQDLLTQAEEEFGYDHPMGGLTIPCSEEVFQRITCCLN 82
BLAST of LR48_mrnaVigan09g030700 vs. DB:Swiss
Match: AX10A_SOYBN (Auxin-induced protein X10A OS=Glycine max OX=3847 PE=2 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 3.585e-22 Identity = 39/82 (47.56%), Postives = 58/82 (70.73%), Query Frame = 1 Query: 61 RCSSLGRKDDEGLRLDVPKGHFVVYVGENRSRYIVPISFLSRPEFQTLLHQAEEEFGFDHE-KGLTIPCQQHVFESLTSMLR 303 R +S+ ++VPKG+ VVYVG+ R+++P+S+L++P FQ LL+QAEEEFG+DH GLTIPC++ F ++TS L Sbjct: 9 RKTSIAANQASSKSVEVPKGYLVVYVGDKMRRFLIPVSYLNQPSFQDLLNQAEEEFGYDHPMGGLTIPCKEDEFLTVTSHLN 90
BLAST of LR48_mrnaVigan09g030700 vs. DB:Swiss
Match: AX6B_SOYBN (Auxin-induced protein 6B OS=Glycine max OX=3847 PE=2 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 1.154e-21 Identity = 39/82 (47.56%), Postives = 53/82 (64.63%), Query Frame = 1 Query: 61 RCSSLGRKDDEGLRLDVPKGHFVVYVGENRSRYIVPISFLSRPEFQTLLHQAEEEFGFDH-EKGLTIPCQQHVFESLTSMLR 303 R +S +DV KG+ VYVGE R+++P+S+L++P FQ LL QAEEEFG+ H GLTIPC + VF+ +TS L Sbjct: 9 RKASFSANQASSKAVDVEKGYLAVYVGEKMRRFVIPVSYLNKPSFQDLLSQAEEEFGYHHPNGGLTIPCSEDVFQHITSFLN 90
BLAST of LR48_mrnaVigan09g030700 vs. DB:Swiss
Match: A10A5_SOYBN (Auxin-induced protein 10A5 OS=Glycine max OX=3847 PE=2 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 5.011e-21 Identity = 41/88 (46.59%), Postives = 58/88 (65.91%), Query Frame = 1 Query: 43 IKQILKRCSSLGRKDDEGLRLDVPKGHFVVYVGENRSRYIVPISFLSRPEFQTLLHQAEEEFGFDHE-KGLTIPCQQHVFESLTSMLR 303 I I++R +S R+DVPKG+ VYVG+ R+ +P+S+L+ P FQ LL QAEEEFG+DH GLTIPC++ F ++T+ L Sbjct: 5 IAGIVRR-TSFYTTQAASKRVDVPKGYAAVYVGDKMRRFTIPVSYLNEPSFQELLSQAEEEFGYDHPMGGLTIPCKEEEFLNVTAHLN 91
BLAST of LR48_mrnaVigan09g030700 vs. DB:Swiss
Match: SAU24_ARATH (Auxin-responsive protein SAUR24 OS=Arabidopsis thaliana OX=3702 GN=SAUR24 PE=2 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 1.996e-20 Identity = 42/88 (47.73%), Postives = 57/88 (64.77%), Query Frame = 1 Query: 46 KQILKRCSSLGRKDDEGLRLDVPKGHFVVYVGEN-RSRYIVPISFLSRPEFQTLLHQAEEEFGFDHE-KGLTIPCQQHVFESLTSMLR 303 K+IL R + G PKG VYVGE+ + RY+VP+S+L++P FQ LL ++EEEFGFDH GLTIPC + F ++TS L+ Sbjct: 11 KKILSRSTGAGSA--------APKGFLAVYVGESQKKRYLVPVSYLNQPSFQALLSKSEEEFGFDHPMGGLTIPCPEDTFINVTSRLQ 90 The following BLAST results are available for this feature:
BLAST of LR48_mrnaVigan09g030700 vs. DB:Swiss
Analysis Date: 2020-05-21 (BLAST: V. angularis Jingnong 6 genome v1.1) Total hits: 10
InterPro
Analysis Name: InterProScan: Vigna angularis Jingnong 6 genome v1.1
Date Performed: 2020-05-21
Sequences
The
following sequences are available for this feature:
mRNA sequence >LR48_mrnaVigan09g030700_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan09g030700_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan09g030700; organism=Vigna angularis; type=mRNA; length=306bpback to top protein sequence of LR48_mrnaVigan09g030700_Va_Jingnong6_v1.1 >LR48_mrnaVigan09g030700_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan09g030700_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan09g030700_Va_Jingnong6_v1.1; organism=Vigna angularis; type=polypeptide; length=101bpback to top mRNA from alignment at Chr_9-CM003379.1:3474825..3475130- Legend: polypeptideCDSexonstart_codonstop_codon Hold the cursor over a type above to highlight its positions in the sequence below.>LR48_mrnaVigan09g030700_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan09g030700_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan09g030700; organism=Vigna angularis; type=mRNA; length=306bp; location=Sequence derived from: Chr_9-CM003379.1:3474825..3475130- (Vigna angularisback to top Coding sequence (CDS) from alignment at Chr_9-CM003379.1:3474825..3475130- >LR48_mrnaVigan09g030700_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan09g030700_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan09g030700; organism=Vigna angularis; type=CDS; length=306bp; location=Sequence derived from: Chr_9-CM003379.1:3474825..3475130- (Vigna angularisback to top Annotated Terms
The
following terms have been associated with
this mRNA:
|