LR48_mrnaVigan09g197600
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Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following start_codon feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following intron feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
Homology
BLAST of LR48_mrnaVigan09g197600 vs. DB:Swiss
Match: UPL5_ARATH (E3 ubiquitin-protein ligase UPL5 OS=Arabidopsis thaliana OX=3702 GN=UPL5 PE=1 SV=1) HSP 1 Score: 560.451 bits (1443), Expect = 0.000e+0 Identity = 278/489 (56.85%), Postives = 354/489 (72.39%), Query Frame = 1 Query: 514 LEEEVDYLRLVFIRLLSKMDECFRFIAECLASKESGGRGFVLNDSWSEYLRILKDLYDTSKVFDGAEEMFWTVLRFHKNMLSALVVAFVKRGGDHRWVLDNKGVTNFECRRHLAMILFPAVEEDFDMLHEMLIDRSQVLAESFEYIGRAKPESLRSGLFMEFKNEKATGPGVLREWFVLVSREIFDSRHALFVSCPNDCRRFYPNPASKVHPRHLEYFRFAGRVIALALLERVQVGIVFDRVFFAQLAGIRVSLEDIRDADPCLYRSCKQILEMDADFIDSDA-LGLTFVRELEELGCREVVELCPGGKNIEFNSQNREHYVDLLIQHCFVTSISEQVANFAQGLADILSSS-KLQQFFQCLELEDLDWMLYGSENTISIEDWKAHTVYKDYKESDCQISWFWEIVGRMSAQQRRVLLLFWTSVKYLPVEGFRGLSSPLSICRTAEPSNRLPSSHTCFNRLFLPEYSSIAVMEDHFGVITQEHIASSFG 1974
LE E+ +L +F LL+ MD C + LA KE G ++ SWS+YL ILK + S ++ GA+ +L +K SALVV F KRG DH+W+ + K TNFE RRHLAM+LFP V+EDF+ +HEMLIDRS +L+ESFEYI A PE+L GLFMEFKNE+ATGPGVLREWF LV +EIF+ ++ LF+ +D RRF PNPASKV P H ++F F GRVIALAL+ +VQVG++FDRVFF QLAG+++SLEDI+D D +Y SCKQILEMD +F DS+A LGLTFV E EELG R+ +ELCP GK NS+NR+ YVDLLI+ F T I EQV F++G D+LS S + FF+ L LEDLD ML G EN ISI+DWKAHT Y +KE+D QI WFW+I+ +M+ +++R +L FWTS K++PVEGFRGLSS L I R E ++RLP SHTCF RL +P Y +I +ME +I Q+H++SSFG
Sbjct: 384 LEAEIRHLHRLFGSLLTTMDLCMCRVESSLADKEVGNSE-TMSSSWSQYLSILKIINSMSNIYQGAKGQLAVMLNKNKVSFSALVVKFAKRGDDHQWIFEYKEATNFEARRHLAMLLFPDVKEDFEEMHEMLIDRSNLLSESFEYIVGASPEALHGGLFMEFKNEEATGPGVLREWFYLVCQEIFNPKNTLFLRSADDFRRFSPNPASKVDPLHPDFFEFTGRVIALALMHKVQVGVLFDRVFFLQLAGLKISLEDIKDTDRIMYNSCKQILEMDPEFFDSNAGLGLTFVLETEELGKRDTIELCPDGKLKAVNSKNRKQYVDLLIERRFATPILEQVKQFSRGFTDMLSHSVPPRSFFKRLYLEDLDGMLRGGENPISIDDWKAHTEYNGFKETDRQIDWFWKILKKMTEEEQRSILFFWTSNKFVPVEGFRGLSSKLYIYRLYEANDRLPLSHTCFYRLCIPRYPTITLMEQRLRLIAQDHVSSSFG 871 HSP 2 Score: 72.0182 bits (175), Expect = 1.229e-11 Identity = 35/96 (36.46%), Postives = 59/96 (61.46%), Query Frame = 2 Query: 134 QFFVRTVSTGSSMVMTGYPEESVKSVLGKIAWVTGMPLRELRVIYKGKQLQLEKTLVESGIENDSNLNIVGHLRSGLYPAASRPIDYVLSLLAHVF 421
Q FVR +S G ++V+ ++V+ + +I W T +P E RVIYKGKQLQ E +L IE D++L +V ++S +P A + ID ++ ++ ++
Sbjct: 96 QIFVRMMSGGKTIVIHAEKYDTVEKLHQRIEWKTKIPALEQRVIYKGKQLQRENSLTYYSIEQDASLQLVARMQSTEHPVAWQTIDDIMYTISRMY 191
BLAST of LR48_mrnaVigan09g197600 vs. DB:Swiss
Match: HACE1_DANRE (E3 ubiquitin-protein ligase HACE1 OS=Danio rerio OX=7955 GN=hace1 PE=3 SV=2) HSP 1 Score: 208.379 bits (529), Expect = 5.364e-56 Identity = 132/370 (35.68%), Postives = 184/370 (49.73%), Query Frame = 1 Query: 871 AVEEDFDMLHE-------MLIDRSQVLAESFEYIGRAKPESLRSGLFMEFKNEKATGPGVLREWFVLVSREIFDSRHALFVSCPNDCRRFYPNPASKVHPRHLEYFRFAGRVIALALLERVQVGIVFDRVFFAQLAGIRVSLEDIRDADPCLYRSCKQILEMDADFIDSDALGLTFVRELEELGCREVVELCPGGKNIEFNSQNREHYVDLLIQHCFVTSISEQVANFAQGLADILSSSKLQQFFQCLELEDLDWMLYGSENTISIEDWKAHTVYKD-YKESDCQISWFWEIVGRMSAQQRRVLLLFWTSVKYLPVEGFRGLSS-----PLSICRTAEPSNRLPSSHTCFNRLFLPEYSSIAVMEDHFGV 1941
A + D DM+H +L+ R + S E + ++ E L+ G+ + F E+ G GV+REWF ++S EI + +ALF D F PN S V+P HL YFRFAG+++ LAL R V I F R F+ + GI VS +D+ DP ++ + IL+ D I L LTF E + G E V L PGG I+ N+E YV L+ + +I Q+ F QG + S L Q F ELE +L I + DWK +T Y Y + I WFWE+V ++ ++R +LL F T +P GF L ++ SN LP+S TC N L LPEY S V+ D V
Sbjct: 532 AGQPDSDMVHRPVNENDILLVHRDSLFRSSCEVVSKSSNEKLKQGIAVRFHGEEGMGQGVVREWFDILSNEIINPDYALFTQSA-DGTTFQPNSNSSVNPDHLNYFRFAGQILGLALYHRQLVNIYFTRSFYKHILGIPVSYQDVSSIDPEYAKNLQWILDND---ISDLGLELTFSVETDVFGTMEEVPLKPGGTTIQVTQDNKEEYVQLVTELRMTRAIQPQINAFLQGFHTFIPPS-LIQLFDEYELE----LLLSGMPEIDVMDWKRNTEYTSGYDLQEPVIQWFWEVVENLTQEERVLLLQFVTGSSRVPHGGFAFLMGGSGLQKFTVAAVPYTSNLLPTSSTCINMLKLPEYPSKDVLRDRLLV 892
BLAST of LR48_mrnaVigan09g197600 vs. DB:Swiss
Match: HACE1_XENTR (E3 ubiquitin-protein ligase HACE1 OS=Xenopus tropicalis OX=8364 GN=hace1 PE=2 SV=1) HSP 1 Score: 204.912 bits (520), Expect = 1.059e-54 Identity = 131/371 (35.31%), Postives = 186/371 (50.13%), Query Frame = 1 Query: 871 AVEEDFDMLHE-------MLIDRSQVLAESFEYIGRAKPESLRSGLFMEFKNEKATGPGVLREWFVLVSREIFDSRHALFVSCPNDCRRFYPNPASKVHPRHLEYFRFAGRVIALALLERVQVGIVFDRVFFAQLAGIRVSLEDIRDADPCLYRSCKQILEMDADFIDSDALGLTFVRELEELGCREVVELCPGGKNIEFNSQNREHYVDLLIQHCFVTSISEQVANFAQGLADILSSSKLQQFFQCLELEDLDWMLYGSENTISIEDWKAHTVYKD-YKESDCQISWFWEIVGRMSAQQRRVLLLFWTSVKYLPVEGF------RGLSSPLSICRTAEPSNRLPSSHTCFNRLFLPEYSSIAVMEDHFGV 1941
A + D DM+H +L+ R + S E + ++ E L+ G+ + F E+ G GV+REWF ++S EI + +ALF D F PN S V+P HL YFRFAG ++ LAL R V I F R F+ + GI V+ +D+ DP ++ + IL+ D I L LTF E + G E V L PGG +I +N+ YV L+ + +I Q+ F QG + S L Q F ELE +L I + DW +T Y Y+ D I WFWE+V ++ ++R +LL F T +P GF GL + +I A N LP+S TC N L LPEY S +++D V
Sbjct: 540 AGQPDSDMVHRPVNENDILLVHRDSIFRSSCEVVFKSNCEKLKQGIAVRFHGEEGMGQGVVREWFDILSSEIINPDYALFTQSA-DGTTFQPNSNSSVNPDHLNYFRFAGEILGLALYHRQLVNIYFTRSFYKHILGIPVNYQDVASIDPEYAKNLQWILDND---ISDLGLELTFSVETDVFGAMEEVPLKPGGASILVTQENKAEYVQLVTELRMTRAIQPQINGFLQGFHMFIPPS-LIQLFDEYELE----LLLSGMPEIDVNDWMKNTEYTSGYERDDQVIQWFWEVVQELTQEERVLLLQFVTGSSRVPHGGFAYIMGGSGLQN-FTIAAVAYTPNLLPTSSTCINMLKLPEYPSKEILKDRLLV 900
BLAST of LR48_mrnaVigan09g197600 vs. DB:Swiss
Match: HACE1_XENLA (E3 ubiquitin-protein ligase HACE1 OS=Xenopus laevis OX=8355 GN=hace1 PE=2 SV=1) HSP 1 Score: 204.527 bits (519), Expect = 1.614e-54 Identity = 130/371 (35.04%), Postives = 187/371 (50.40%), Query Frame = 1 Query: 871 AVEEDFDMLHE-------MLIDRSQVLAESFEYIGRAKPESLRSGLFMEFKNEKATGPGVLREWFVLVSREIFDSRHALFVSCPNDCRRFYPNPASKVHPRHLEYFRFAGRVIALALLERVQVGIVFDRVFFAQLAGIRVSLEDIRDADPCLYRSCKQILEMDADFIDSDALGLTFVRELEELGCREVVELCPGGKNIEFNSQNREHYVDLLIQHCFVTSISEQVANFAQGLADILSSSKLQQFFQCLELEDLDWMLYGSENTISIEDWKAHTVYKD-YKESDCQISWFWEIVGRMSAQQRRVLLLFWTSVKYLPVEGF------RGLSSPLSICRTAEPSNRLPSSHTCFNRLFLPEYSSIAVMEDHFGV 1941
A + D DM+H +L+ R + S E + ++ E L+ G+ + F E+ G GV+REWF ++S E+ + +ALF D F PN S V+P HL YFRFAG ++ LAL R V I F R F+ + GI V+ +D+ DP ++ + IL+ D I L LTF E + G E V L PGG +I +N+ YV L+ + +I Q+ F QG + S L Q F ELE +L I + DW +T Y Y+ D I WFWE+V ++ ++R +LL F T +P GF GL + +I A +N LP+S TC N L LPEY S +++D V
Sbjct: 572 AGQPDTDMVHRPVNENDILLVHRDSIFRSSCEVVFKSNCEKLKQGIAVRFHGEEGMGQGVVREWFDILSSEMINPDYALFTQSA-DGTTFQPNSNSSVNPDHLNYFRFAGEILGLALYHRQLVNIYFTRSFYKHILGIPVNYQDVASIDPEYAKNLQWILDND---ISDLGLELTFSVETDVFGAMEEVPLKPGGASILVTQENKAEYVQLVTELRMTRAIQPQINGFLQGFHMFIPPS-LIQLFDEYELE----LLLSGMPEIDVNDWMKNTEYTSGYERDDQVIQWFWEVVQELTQEERVLLLQFVTGSSRVPHGGFAYIMGGSGLQN-FTIAAVAYTANLLPTSSTCINMLKLPEYPSKEILKDRLLV 932
BLAST of LR48_mrnaVigan09g197600 vs. DB:Swiss
Match: TOM1_YEAST (E3 ubiquitin-protein ligase TOM1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TOM1 PE=1 SV=1) HSP 1 Score: 205.297 bits (521), Expect = 3.047e-54 Identity = 137/440 (31.14%), Postives = 223/440 (50.68%), Query Frame = 1 Query: 682 YDTSKVFDGA----EEMFWTVLRFHKNMLSALVVAFVK-RGGDHRWVLDNKGVTNFECRRHLAMILFPAVEEDFDMLHEMLIDRSQVLAESFEYIG-RAKPESLRSGLFMEFKNEKAT-GPGVLREWFVLVSREIFDSRHALFVSCPNDCRRFYPNPASKVHPRHLEYFRFAGRVIALALLERVQVGIVFDRVFFAQLAGIRVSLEDIRDADPCLYRSCKQILEMDADFIDSDALGLTFVRELEELGCREVVELCPGGKNIEFNSQNREHYVDLLIQHCFVTSISEQVANFAQGLADILSSSKLQQFFQCLELEDLDWMLYGSENTISIEDWKAHTVYKDYKESDCQISWFWEIVGRMSAQQRRVLLLFWTSVKYLPVEGFRGLSSPLSIC-----RTAEPSNRLPSSHTCFNRLFLPEYSS---------IAVMEDHFG 1938
Y+ +K+ D + E +F+ HK +L+ ++ + K G ++ N V +F+ +R+ + ++ L + + R QV +S+ + + E S L + FK E GV REW+ ++SR++F+ +ALF+ P+D F+PN S ++P HL +F+F G +I A+ ++ + F R + + G VSL+D+ DP Y+S ILE D +D + TF E ++ G +V+ L GGK+I N++ YV ++++ TS+ EQ+ NF G ++S L F ELE +L I ++DWK +T Y +Y + ++S+FW V A++R LL F T +P+ GF+ LS +C R S RLPSSHTCFN+L LP Y S +A+ E H G
Sbjct: 2835 YEDAKLLDFSKTRVENLFFPFTDAHKKLLNQMIRSNPKLMSGPFALLVKNPKVLDFDNKRYFFNAKLKSDNQERPKL-PITVRREQVFLDSYRALFFKTNDEIKNSKLEITFKGESGVDAGGVTREWYQVLSRQMFNPDYALFLPVPSDKTTFHPNRTSGINPEHLSFFKFIGMIIGKAIRDQCFLDCHFSREVYKNILGRPVSLKDMESLDPDYYKSLVWILENDI----TDIIEETFSVETDDYGEHKVINLIEGGKDIIVTEANKQDYVKKVVEYKLQTSVKEQMDNFLVGFYALISKD-LITIFDEQELE----LLISGLPDIDVDDWKNNTTYVNYTATCKEVSYFWRAVRSFDAEERAKLLQFVTGTSKVPLNGFKELSGVNGVCKFSIHRDFGSSERLPSSHTCFNQLNLPPYESYETLRGSLLLAINEGHEG 3264
BLAST of LR48_mrnaVigan09g197600 vs. DB:Swiss
Match: HACE1_RAT (E3 ubiquitin-protein ligase HACE1 OS=Rattus norvegicus OX=10116 GN=Hace1 PE=3 SV=1) HSP 1 Score: 201.445 bits (511), Expect = 1.692e-53 Identity = 130/369 (35.23%), Postives = 183/369 (49.59%), Query Frame = 1 Query: 877 EEDFDMLHE-------MLIDRSQVLAESFEYIGRAKPESLRSGLFMEFKNEKATGPGVLREWFVLVSREIFDSRHALFVSCPNDCRRFYPNPASKVHPRHLEYFRFAGRVIALALLERVQVGIVFDRVFFAQLAGIRVSLEDIRDADPCLYRSCKQILEMDADFIDSDALGLTFVRELEELGCREVVELCPGGKNIEFNSQNREHYVDLLIQHCFVTSISEQVANFAQGLADILSSSKLQQFFQCLELEDLDWMLYGSENTISIEDWKAHTVYKD-YKESDCQISWFWEIVGRMSAQQRRVLLLFWTSVKYLPVEGF------RGLSSPLSICRTAEPSNRLPSSHTCFNRLFLPEYSSIAVMEDHFGV 1941
+ D DM+H +L+ R + S E + +A L+ G+ + F E+ G GV+REWF ++S EI + +ALF D F PN S V+P HL YFRFAG+++ LAL R V I F R F+ + GI V+ +D+ DP ++ + IL+ D I L LTF E + G E V L PGG +I N+ YV L+ + +I Q+ F QG + S L Q F ELE +L I + DW +T Y Y+ D I WFWE+V M+ ++R +LL F T +P GF GL + +I N LP+S TC N L LPEY S +++D V
Sbjct: 539 QPDSDMVHRPVSENDILLVHRDSIFRSSCEIVSKANCAKLKQGIAVRFHGEEGMGQGVVREWFDILSNEIVNPDYALFTQSA-DGTTFQPNSNSYVNPDHLNYFRFAGQILGLALNHRQLVNIYFTRSFYKHILGIPVNYQDVASIDPEYAKNLQWILDND---ISDLGLELTFSVETDVFGAMEEVPLKPGGGSILVTQNNKAEYVQLVTELRMTRAIQPQINAFLQGFHMFIPPS-LIQLFDEYELE----LLLSGMPEIDVNDWIKNTEYTSGYEREDPVIQWFWEVVEDMTQEERVLLLQFVTGSSRVPHGGFANIMGGSGLQN-FTIAAVPYTPNLLPTSSTCINMLKLPEYPSKEILKDRLLV 897
BLAST of LR48_mrnaVigan09g197600 vs. DB:Swiss
Match: HUWE1_RAT (E3 ubiquitin-protein ligase HUWE1 (Fragment) OS=Rattus norvegicus OX=10116 GN=Huwe1 PE=1 SV=2) HSP 1 Score: 189.504 bits (480), Expect = 1.785e-53 Identity = 111/330 (33.64%), Postives = 169/330 (51.21%), Query Frame = 1 Query: 1006 EKATGPGVLREWFVLVSREIFDSRHALFVSCPNDCRRFYPNPASKVHPRHLEYFRFAGRVIALALLERVQVGIVFDRVFFAQLAGIRVSLEDIRDADPCLYRSCKQILEMDADFIDSDALGLTFVRELEELGCREVVELCPGGKNIEFNSQNREHYVDLLIQHCFVTSISEQVANFAQGLADILSSSKLQQFFQCLELEDLDWMLYGSENTISIEDWKAHTVYKDYKESDCQISWFWEIVGRMSAQQRRVLLLFWTSVKYLPVEGFRGLSS-----PLSICRTAEPSNRLPSSHTCFNRLFLPEYSSIAVMEDHFGVITQEHIASSFGLS 1980
E G+LREW++++SRE+F+ +ALF + P D + NP+S +P HL YF+F GR++A A+ + + F R F+ + G V D+ D Y+ +LE D + D LTF E++E G EV +L P G NI +N++ YV L+ Q +I +Q+A F +G +I+ +L F ELE +L TI I+D K++T Y Y+ + QI WFW + R L F T +P++GF L I R ++RLPS+HTCFN+L LP Y S + H ++ + + FGL+
Sbjct: 2 EGQDAGGLLREWYMIISREMFNPMYALFRTSPGDRVTYTINPSSHCNPNHLSYFKFVGRIVAKAVYDNRLLECYFTRSFYKHILGKSVRYTDMESEDYHFYQGLVYLLENDVSTLGYD---LTFSTEVQEFGVCEVRDLKPNGANILVTEENKKEYVHLVCQMRMTGAIRKQLAAFLEGFYEII-PKRLISIFTEQELE----LLISGLPTIDIDDLKSNTEYHKYQSNSIQIQWFWRALRSFDQADRAKFLQFVTGTSKVPLQGFAALEGMNGIQKFQIHRDDRSTDRLPSAHTCFNQLDLPAYESFEKLR-HMLLLAIQECSEGFGLA 322
BLAST of LR48_mrnaVigan09g197600 vs. DB:Swiss
Match: HACE1_CHICK (E3 ubiquitin-protein ligase HACE1 OS=Gallus gallus OX=9031 GN=HACE1 PE=2 SV=1) HSP 1 Score: 201.06 bits (510), Expect = 2.182e-53 Identity = 128/369 (34.69%), Postives = 185/369 (50.14%), Query Frame = 1 Query: 877 EEDFDMLHE-------MLIDRSQVLAESFEYIGRAKPESLRSGLFMEFKNEKATGPGVLREWFVLVSREIFDSRHALFVSCPNDCRRFYPNPASKVHPRHLEYFRFAGRVIALALLERVQVGIVFDRVFFAQLAGIRVSLEDIRDADPCLYRSCKQILEMDADFIDSDALGLTFVRELEELGCREVVELCPGGKNIEFNSQNREHYVDLLIQHCFVTSISEQVANFAQGLADILSSSKLQQFFQCLELEDLDWMLYGSENTISIEDWKAHTVYKD-YKESDCQISWFWEIVGRMSAQQRRVLLLFWTSVKYLPVEGF------RGLSSPLSICRTAEPSNRLPSSHTCFNRLFLPEYSSIAVMEDHFGV 1941
+ D DM+H +L+ R + S E + +A L+ G+ + F E+ G GV+REWF ++S EI + +ALF D F PN S V+P HL YFRFAG+++ LAL R V I F R F+ + GI V+ +D+ DP ++ + IL+ D I L LTF E + G E V L PGG +I +N+ YV L+ + +I Q+ F QG + S L Q F ELE +L I + DW +T Y Y+ D I WFW++V ++ ++R +LL F T +P GF GL + +I +N LP+S TC N L LPEY S +++D V
Sbjct: 572 QPDSDMVHRPVNENDILLVHRDSIFRSSCEVVSKANCAKLKQGIAVRFHGEEGMGQGVVREWFDILSSEIVNPDYALFTQSA-DGTTFQPNSNSSVNPDHLNYFRFAGQILGLALNHRQLVNIYFTRSFYKHILGIPVNYQDVASIDPEYAKNLQWILDND---ISDLGLELTFSVETDVFGAMEEVPLKPGGASILVTQENKAEYVQLVTELRMTRAIQPQINAFLQGFHMFIPPS-LIQLFDEYELE----LLLSGMPEIDVNDWLKNTEYTSGYERGDQVIQWFWDVVEELTQEERVLLLQFVTGSSRVPHGGFAHIMGGSGLQN-FTIAAVPYTANLLPTSSTCINMLKLPEYPSKEILKDRLLV 930
BLAST of LR48_mrnaVigan09g197600 vs. DB:Swiss
Match: HACE1_BOVIN (E3 ubiquitin-protein ligase HACE1 OS=Bos taurus OX=9913 GN=HACE1 PE=3 SV=3) HSP 1 Score: 200.675 bits (509), Expect = 2.599e-53 Identity = 129/369 (34.96%), Postives = 183/369 (49.59%), Query Frame = 1 Query: 877 EEDFDMLHE-------MLIDRSQVLAESFEYIGRAKPESLRSGLFMEFKNEKATGPGVLREWFVLVSREIFDSRHALFVSCPNDCRRFYPNPASKVHPRHLEYFRFAGRVIALALLERVQVGIVFDRVFFAQLAGIRVSLEDIRDADPCLYRSCKQILEMDADFIDSDALGLTFVRELEELGCREVVELCPGGKNIEFNSQNREHYVDLLIQHCFVTSISEQVANFAQGLADILSSSKLQQFFQCLELEDLDWMLYGSENTISIEDWKAHTVYKD-YKESDCQISWFWEIVGRMSAQQRRVLLLFWTSVKYLPVEGF------RGLSSPLSICRTAEPSNRLPSSHTCFNRLFLPEYSSIAVMEDHFGV 1941
+ D DM+H +L+ R + S E + +A L+ G+ + F E+ G GV+REWF ++S EI + +ALF D F PN S V+P HL YFRFAG+++ LAL R V I F R F+ + GI V+ +D+ DP ++ + IL+ D I L LTF E + G E V L PGG +I N+ YV L+ + +I Q+ F QG + S L Q F ELE +L I + DW +T Y Y+ D I WFWE+V ++ ++R +LL F T +P GF GL + +I N LP+S TC N L LPEY S +++D V
Sbjct: 539 QPDSDMVHRPVNENDILLVHRDSIFRSSCEVVSKANCAKLKQGIAVRFHGEEGMGQGVVREWFDILSNEIVNPDYALFTQSA-DGTTFQPNSNSSVNPDHLNYFRFAGQILGLALNHRQLVNIYFTRSFYKHILGIPVNYQDVASIDPEYAKNLQWILDND---ISDLGLELTFSVETDVFGAMEEVPLKPGGGSILVTQNNKAEYVQLVTELRMTRAIQPQINAFLQGFHMFIPPS-LIQLFDEYELE----LLLSGMPEIDVSDWIKNTEYTSGYEREDPVIQWFWEVVEDITPEERVLLLQFVTGSSRVPHGGFANIMGGSGLQN-FTIAAVPYTPNLLPTSSTCINMLKLPEYPSKEILKDRLLV 897
BLAST of LR48_mrnaVigan09g197600 vs. DB:Swiss
Match: UPL2_ARATH (E3 ubiquitin-protein ligase UPL2 OS=Arabidopsis thaliana OX=3702 GN=UPL2 PE=1 SV=3) HSP 1 Score: 201.83 bits (512), Expect = 4.848e-53 Identity = 126/347 (36.31%), Postives = 180/347 (51.87%), Query Frame = 1 Query: 910 IDRSQVLAESFEYIGRAKPESLRSGLFMEFKNEKATGPGVL-REWFVLVSREIFDSRHALFVSCPNDCRRFYPNPASKVHPRHLEYFRFAGRVIALALLERVQVGIVFDRVFFAQLAGIRVSLEDIRDADPCLYRSCKQILEMDADFIDSDALGLTFVRELEE-----LGCREVV--ELCPGGKNIEFNSQNREHYVDLLIQHCFVTSISEQVANFAQGLADILSSSKLQQFFQCLELEDLDWMLYGSENTISIEDWKAHTVYKDYKESDCQISWFWEIVGRMSAQQRRVLLLFWTSVKYLPVEGFR---GLSSP--LSICRTAEPSNRLPSSHTCFNRLFLPEYSS 1911
+ R+ VL +S+ + P+ L+ L ++F+ E+ G L REW+ L+SR IFD LF + ND F PNP S HL YF+F GR++A AL + + + F R F+ + G++V+ DI DP Y++ K +LE D SD L LTF + +E EV EL PGG+NI + + YVDL+ H ++I Q+ F +GL +++ +L F ELE +L I +D KA+T Y Y I WFWE+V S + L F T +P+EGF+ G+S P L I + RLPS+HTCFN+L LPEY S
Sbjct: 3300 VRRAYVLEDSYNQLRMRSPQDLKGRLNVQFQGEEGIDAGGLTREWYQLLSRVIFDKGALLFTTVGNDAT-FQPNPNSVYQTEHLSYFKFVGRMVAKALFDGQLLDVYFTRSFYKHILGVKVTYHDIEAVDPDYYKNLKWLLENDV----SDILDLTFSMDADEEKHILYEKTEVTDYELKPGGRNIRVTEETKHEYVDLVADHILTSAIRPQINAFLEGLNELI-PRELVSIFNDKELE----LLISGLPEIDFDDLKANTEYTSYTVGSPVIRWFWEVVKAFSKEDMARFLQFVTGTSKVPLEGFKALQGISGPQRLQIHKAYGSPERLPSAHTCFNQLDLPEYQS 3636 The following BLAST results are available for this feature:
BLAST of LR48_mrnaVigan09g197600 vs. DB:Swiss
Analysis Date: 2020-05-21 (BLAST: V. angularis Jingnong 6 genome v1.1) Total hits: 10 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan: Vigna angularis Jingnong 6 genome v1.1
Date Performed: 2020-05-21 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >LR48_mrnaVigan09g197600_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan09g197600_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan09g197600; organism=Vigna angularis; type=mRNA; length=5692bpback to top protein sequence of LR48_mrnaVigan09g197600_Va_Jingnong6_v1.1 >LR48_mrnaVigan09g197600_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan09g197600_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan09g197600_Va_Jingnong6_v1.1; organism=Vigna angularis; type=polypeptide; length=660bpback to top mRNA from alignment at Chr_9-CM003379.1:24716667..24722358- Legend: polypeptidestart_codonexonCDSintronstop_codon Hold the cursor over a type above to highlight its positions in the sequence below.>LR48_mrnaVigan09g197600_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan09g197600_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan09g197600; organism=Vigna angularis; type=mRNA; length=5692bp; location=Sequence derived from: Chr_9-CM003379.1:24716667..24722358- (Vigna angularisback to top Coding sequence (CDS) from alignment at Chr_9-CM003379.1:24716667..24722358- >LR48_mrnaVigan09g197600_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan09g197600_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan09g197600; organism=Vigna angularis; type=CDS; length=1983bp; location=Sequence derived from: Chr_9-CM003379.1:24716667..24722358- (Vigna angularisback to top |