Vfaba.Hedin2.R1.1g062680.1
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of Vfaba.Hedin2.R1.1g062680.1 vs. UniProtKB/TrEMBL
Match: tr|G7ITT2|G7ITT2_MEDTR (Uncharacterized protein OS=Medicago truncatula OX=3880 GN=MTR_2g086480 PE=4 SV=1) HSP 1 Score: 190.66 bits (483), Expect = 1.126e-57 Identity = 103/143 (72.03%), Postives = 120/143 (83.92%), Query Frame = 0 Query: 1 MDQENKLIHSTSTWKTRNPTCHIQTSL-SLQQNDHRLKCNSS----YKTSNDDGDESKEKENNENGT-RVEEITGRERLKRHREEVKGEVKIPENWEKEPKLKEWVDYTTFNALISVPHALIVTARDALIDDVRKSRSQRLRI 137 MDQEN+L H+ STWK RNPTCHI TSL SLQQ+D++L+CNS Y +DD +++KE+EN ENGT RVEEITGRERLKRHREE+KG+VK+PENWEKE KLKEWVDYTTF+ALI PHALIVTARDALI DVRKSR + L + Sbjct: 1 MDQENRLTHNISTWKRRNPTCHIPTSLLSLQQSDYKLECNSPNKKNYDEIDDDDEKAKEEENKENGTARVEEITGRERLKRHREEMKGKVKVPENWEKEQKLKEWVDYTTFDALIFAPHALIVTARDALIADVRKSRPRELHL 143
BLAST of Vfaba.Hedin2.R1.1g062680.1 vs. UniProtKB/TrEMBL
Match: tr|A0A396JAY3|A0A396JAY3_MEDTR (Uncharacterized protein OS=Medicago truncatula OX=3880 GN=MtrunA17_Chr2g0321471 PE=4 SV=1) HSP 1 Score: 184.882 bits (468), Expect = 1.646e-57 Identity = 102/138 (73.91%), Postives = 118/138 (85.51%), Query Frame = 0 Query: 1 MDQENKLIHSTSTWKTRNPTCHIQTSL-SLQQNDHRLKCNS----SYKTSNDDGDESKEKENNENGT-RVEEITGRERLKRHREEVKGEVKIPENWEKEPKLKEWVDYTTFNALISVPHALIVTARDALIDDVRKSRS 132 MDQEN+L H+ STWK RNPTCHI TSL SLQQ+D++L+CNS +Y +DD +++KE+EN ENGT RVEEITGRERLKRHREE+KG+VK+PENWEKE KLKEWVDYTTF+ALI PHALIVTARDALI DVRKS S Sbjct: 1 MDQENRLTHNISTWKRRNPTCHIPTSLLSLQQSDYKLECNSPNKKNYDEIDDDDEKAKEEENKENGTARVEEITGRERLKRHREEMKGKVKVPENWEKEQKLKEWVDYTTFDALIFAPHALIVTARDALIADVRKSSS 138
BLAST of Vfaba.Hedin2.R1.1g062680.1 vs. UniProtKB/TrEMBL
Match: tr|A0A1S2XG43|A0A1S2XG43_CICAR (protein BIC2 OS=Cicer arietinum OX=3827 GN=LOC101505815 PE=4 SV=1) HSP 1 Score: 172.17 bits (435), Expect = 1.474e-52 Identity = 87/139 (62.59%), Postives = 109/139 (78.42%), Query Frame = 0 Query: 1 MDQENKLIHSTSTWKTRNPTCHIQTSLSLQQNDHRLKCNSSYKTSNDDGDESKEKENNENGT-RVEEITGRERLKRHREEVKGEVKIPENWEKEPKLKEWVDYTTFNALISVPHALIVTARDALIDDVRKSRSQRLRIH 138 MDQEN L + S+W+TR PTCH+ SLS++QND +LKC S +D+ E E N+EN + +VEEITGRE+LKRHREEVKG++++P+NWEKE LKEWVDYTTF+A + PH LIV ARDALI+D RK+RSQRLRIH Sbjct: 1 MDQENILTRNISSWETRKPTCHVPNSLSIEQND-KLKCKSLIDDDDDEAKEVLEHNNHENDSYKVEEITGREKLKRHREEVKGKIELPKNWEKEKMLKEWVDYTTFDASFA-PHKLIVIARDALIEDARKARSQRLRIH 137
BLAST of Vfaba.Hedin2.R1.1g062680.1 vs. UniProtKB/TrEMBL
Match: tr|A0A2Z6LY45|A0A2Z6LY45_TRISU (Uncharacterized protein OS=Trifolium subterraneum OX=3900 GN=TSUD_107220 PE=4 SV=1) HSP 1 Score: 164.851 bits (416), Expect = 1.033e-49 Identity = 91/132 (68.94%), Postives = 103/132 (78.03%), Query Frame = 0 Query: 12 STWKTRNPTCHIQTSLSLQQNDHRLKCNSSYKTSNDDGDESKEKENNEN----GTRV-EEITGRERLKRHREEVKGEVKIPENWEKEPKLKEWVDYTTFNALISVPHALIVTARDALIDDVRKSRSQRLRIH 138 STWKTR P +S S+QQND +LKC +DD + ++E+E NEN TRV EEITGRERLKRHREE+KG+VK+PENWEKE KLKEWVDYT F+ALI PHALIVTARDALI DVRKSRSQRLRIH Sbjct: 8 STWKTRKPINIPTSSTSIQQND-KLKCKY-----DDDDNNAREEEYNENVIELETRVVEEITGRERLKRHREEMKGKVKVPENWEKEKKLKEWVDYTKFDALIFAPHALIVTARDALIADVRKSRSQRLRIH 133
BLAST of Vfaba.Hedin2.R1.1g062680.1 vs. UniProtKB/TrEMBL
Match: tr|A0A2K3M7J3|A0A2K3M7J3_TRIPR (Soft fertilization envelope protein (Fragment) OS=Trifolium pratense OX=57577 GN=L195_g042826 PE=4 SV=1) HSP 1 Score: 135.191 bits (339), Expect = 4.032e-38 Identity = 83/133 (62.41%), Postives = 94/133 (70.68%), Query Frame = 0 Query: 3 QENKLIHSTSTWKTRNPT--CH--IQTSLSLQQNDHRLKCNSSYKTSNDDGDESKEKENNENGTR-----VEEITGRERLKRHREEVKGEVKIPENWEKEPKLKEWVDYTTFNALISVPHALIVTARDALIDD 126 QEN H+ STWKTR CH +S S+QQND +LKC DD D ++E+E NEN VEEITGRERLKRHREE+KG+VK+PENWEKE KLKEWVDYT F+ALI PHALIVTARDALI D Sbjct: 4 QENH--HNISTWKTRKSIIDCHNPTSSSTSIQQNDDKLKCKY------DDDDNAREEEYNENVVELETKVVEEITGRERLKRHREEMKGKVKVPENWEKEKKLKEWVDYTKFDALIFAPHALIVTARDALIAD 128
BLAST of Vfaba.Hedin2.R1.1g062680.1 vs. UniProtKB/TrEMBL
Match: tr|A0A1J7GTZ2|A0A1J7GTZ2_LUPAN (Uncharacterized protein OS=Lupinus angustifolius OX=3871 GN=TanjilG_24143 PE=4 SV=1) HSP 1 Score: 115.546 bits (288), Expect = 3.210e-30 Identity = 67/130 (51.54%), Postives = 81/130 (62.31%), Query Frame = 0 Query: 16 TRNPTCHIQTSLSLQQNDHRL-------KCNSSYKTSNDDGDESKEKENNENGTRVEEITGRERLKRHREEVKGEVKIPENWEKEPKLKEWVDYTTFNALISVPHALIVTARDALIDDVRKSRSQRLRIH 138 TR PT +SLSL+ N++ + C S N D + + RVEE +GRERLKRHREEV G+VKIP+ W KE LK+WVDYTTF+A+ PH I+TARDALI D RK SQRLRIH Sbjct: 8 TREPTSQNHSSLSLEPNNNLIMMNITQQACKSPTTIENSDKGINASIHTSGETRRVEE-SGRERLKRHREEVMGKVKIPKKWGKEKLLKDWVDYTTFDAVFP-PHTSIITARDALIADGRKPSSQRLRIH 135
BLAST of Vfaba.Hedin2.R1.1g062680.1 vs. UniProtKB/TrEMBL
Match: tr|C6T1U3|C6T1U3_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=100500466 PE=2 SV=1) HSP 1 Score: 110.538 bits (275), Expect = 3.138e-28 Identity = 69/139 (49.64%), Postives = 91/139 (65.47%), Query Frame = 0 Query: 5 NKLIHSTSTWKTRN-PTCHIQTSLSLQQND-HRLKCNSSYKTSNDDGDESKEKE--NNENGTRV---EEITGRERLKRHREEVKGE-VKIPENWEKEPKLKEWVDYTTFNALISVPHALIVTARDALIDDVRKSRSQRL 135 N L H+ TW +R T S SL+ N+ +LK N+ S + D++K+ E ++EN +V EEITGRERLKR REEV + V IPENW +EPKLK+W+DYT F+A PH LIVTARDALI + R+++S RL Sbjct: 4 NNLPHNMPTWSSRKLVTSQSPASFSLEPNEKQKLKNNTQECKSPNTNDKAKDPEEGHSENIGKVDGVEEITGRERLKRLREEVTMDKVNIPENWGQEPKLKDWMDYTMFDAFF--PHTLIVTARDALIANAREAKSPRL 140
BLAST of Vfaba.Hedin2.R1.1g062680.1 vs. UniProtKB/TrEMBL
Match: tr|A0A0B2RI09|A0A0B2RI09_GLYSO (Protein BIC2 OS=Glycine soja OX=3848 GN=D0Y65_032353 PE=4 SV=1) HSP 1 Score: 110.538 bits (275), Expect = 3.138e-28 Identity = 69/139 (49.64%), Postives = 91/139 (65.47%), Query Frame = 0 Query: 5 NKLIHSTSTWKTRN-PTCHIQTSLSLQQND-HRLKCNSSYKTSNDDGDESKEKE--NNENGTRV---EEITGRERLKRHREEVKGE-VKIPENWEKEPKLKEWVDYTTFNALISVPHALIVTARDALIDDVRKSRSQRL 135 N L H+ TW +R T S SL+ N+ +LK N+ S + D++K+ E ++EN +V EEITGRERLKR REEV + V IPENW +EPKLK+W+DYT F+A PH LIVTARDALI + R+++S RL Sbjct: 4 NNLPHNMPTWSSRKLVTSQSPASFSLEPNEKQKLKNNTQECKSPNTNDKAKDPEEGHSENIGKVDGVEEITGRERLKRLREEVTMDKVNIPENWGQEPKLKDWMDYTMFDAFF--PHTLIVTARDALIANAREAKSPRL 140
BLAST of Vfaba.Hedin2.R1.1g062680.1 vs. UniProtKB/TrEMBL
Match: tr|C6TM79|C6TM79_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=100810928 PE=2 SV=1) HSP 1 Score: 108.997 bits (271), Expect = 1.405e-27 Identity = 72/140 (51.43%), Postives = 94/140 (67.14%), Query Frame = 0 Query: 3 QENKLIHSTSTWKTRN-PTCHIQTSLSLQQNDHRLKCNSSYKTSNDDGDESK--EKENNENGTRVE---EITGRERLKRHREEVKGE-VKIPENWEKEPKLKEWVDYTTFNALISVPHALIVTARDALIDDVRKSRSQRL 135 +E+KL H+ T +R T SLSL+ N+ +LK NS S + D++K EK ++EN +V+ E TGRERLKR REEV E V IPENW +EPKLK+W+DYT F+A PH+LIVTARDALI + RK++S RL Sbjct: 2 EESKLSHNIPTGSSRKLVTSQSPPSLSLEPNE-KLKNNSQECKSPNTNDKAKDPEKGHSENIGKVDDDVEETGRERLKRLREEVTMEKVNIPENWGQEPKLKDWMDYTMFDAFF--PHSLIVTARDALIANTRKAKSPRL 138
BLAST of Vfaba.Hedin2.R1.1g062680.1 vs. UniProtKB/TrEMBL
Match: tr|A0A0B2R757|A0A0B2R757_GLYSO (Protein BIC2 OS=Glycine soja OX=3848 GN=D0Y65_034804 PE=4 SV=1) HSP 1 Score: 108.997 bits (271), Expect = 1.405e-27 Identity = 72/140 (51.43%), Postives = 94/140 (67.14%), Query Frame = 0 Query: 3 QENKLIHSTSTWKTRN-PTCHIQTSLSLQQNDHRLKCNSSYKTSNDDGDESK--EKENNENGTRVE---EITGRERLKRHREEVKGE-VKIPENWEKEPKLKEWVDYTTFNALISVPHALIVTARDALIDDVRKSRSQRL 135 +E+KL H+ T +R T SLSL+ N+ +LK NS S + D++K EK ++EN +V+ E TGRERLKR REEV E V IPENW +EPKLK+W+DYT F+A PH+LIVTARDALI + RK++S RL Sbjct: 2 EESKLSHNIPTGSSRKLVTSQSPPSLSLEPNE-KLKNNSQECKSPNTNDKAKDPEKGHSENIGKVDDDVEETGRERLKRLREEVTMEKVNIPENWGQEPKLKDWMDYTMFDAFF--PHSLIVTARDALIANTRKAKSPRL 138
BLAST of Vfaba.Hedin2.R1.1g062680.1 vs. UniProtKB/Swiss-Prot
Match: sp|Q9M280|BIC2_ARATH (Protein BIC2 OS=Arabidopsis thaliana OX=3702 GN=BIC2 PE=1 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 2.185e-18 Identity = 42/97 (43.30%), Postives = 61/97 (62.89%), Query Frame = 0 Query: 52 SKEKENNENGTRV-----EEITGRERLKRHREEVKGEVKIPENWEKEPKLKEWVDYTTFNALISVPHALIVTARDALIDD------VRKSRSQRLRI 137 S ++ N+ GT+ ++GR+RLKRHREEV G+V IP++W KE L W+D++TF+A + + IV+AR AL+ D R SR QRLR+ Sbjct: 18 SSHRKQNKTGTKTCFPETTVLSGRDRLKRHREEVAGKVPIPDSWGKEGLLMGWMDFSTFDAAFT--SSQIVSARAALMADSGDDAGARGSRPQRLRV 112
BLAST of Vfaba.Hedin2.R1.1g062680.1 vs. UniProtKB/Swiss-Prot
Match: sp|Q9LXJ1|BIC1_ARATH (Protein BIC1 OS=Arabidopsis thaliana OX=3702 GN=BIC1 PE=1 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 3.521e-14 Identity = 45/114 (39.47%), Postives = 68/114 (59.65%), Query Frame = 0 Query: 30 QQNDHRLKCNSSYKTSNDDGD----ESKEKENNENGTRVEEITGRERLKRHREEVKGEVKIPENWEKEPKLKEWVDYTTFNALISVPHALIVTARDALIDDVRKSRSQRLRIHH 139 +Q+ L ++ S D D E K K++ E RV+ TGRERLK+HR E+ G V IPE W +E LK+W+D +TF+ + VP A I +AR AL+++ R++ S +H+ Sbjct: 26 KQDPPSLPQEAASSVSADKKDLALLEEKPKQSQEE-DRVD--TGRERLKKHRREIAGRVWIPEIWGQEELLKDWIDCSTFDTCL-VP-AGISSARTALVEEARRAASASGGLHN 134
BLAST of Vfaba.Hedin2.R1.1g062680.1 vs. Araport11
Match: AT3G44450.1 (| hypothetical protein | Chr3:16074228-16074578 REVERSE LENGTH=116 | 201606) HSP 1 Score: 78.1814 bits (191), Expect = 2.235e-19 Identity = 42/97 (43.30%), Postives = 61/97 (62.89%), Query Frame = 0 Query: 52 SKEKENNENGTRV-----EEITGRERLKRHREEVKGEVKIPENWEKEPKLKEWVDYTTFNALISVPHALIVTARDALIDD------VRKSRSQRLRI 137 S ++ N+ GT+ ++GR+RLKRHREEV G+V IP++W KE L W+D++TF+A + + IV+AR AL+ D R SR QRLR+ Sbjct: 18 SSHRKQNKTGTKTCFPETTVLSGRDRLKRHREEVAGKVPIPDSWGKEGLLMGWMDFSTFDAAFT--SSQIVSARAALMADSGDDAGARGSRPQRLRV 112
BLAST of Vfaba.Hedin2.R1.1g062680.1 vs. Araport11
Match: AT3G52740.1 (| hypothetical protein | Chr3:19546446-19546868 REVERSE LENGTH=140 | 201606) HSP 1 Score: 67.781 bits (164), Expect = 3.603e-15 Identity = 45/114 (39.47%), Postives = 68/114 (59.65%), Query Frame = 0 Query: 30 QQNDHRLKCNSSYKTSNDDGD----ESKEKENNENGTRVEEITGRERLKRHREEVKGEVKIPENWEKEPKLKEWVDYTTFNALISVPHALIVTARDALIDDVRKSRSQRLRIHH 139 +Q+ L ++ S D D E K K++ E RV+ TGRERLK+HR E+ G V IPE W +E LK+W+D +TF+ + VP A I +AR AL+++ R++ S +H+ Sbjct: 26 KQDPPSLPQEAASSVSADKKDLALLEEKPKQSQEE-DRVD--TGRERLKKHRREIAGRVWIPEIWGQEELLKDWIDCSTFDTCL-VP-AGISSARTALVEEARRAASASGGLHN 134 The following BLAST results are available for this feature:
BLAST of Vfaba.Hedin2.R1.1g062680.1 vs. UniProtKB/TrEMBL
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs UniProt TrEMBL) Total hits: 10
BLAST of Vfaba.Hedin2.R1.1g062680.1 vs. UniProtKB/Swiss-Prot
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs UniProt Swissprot) Total hits: 2
BLAST of Vfaba.Hedin2.R1.1g062680.1 vs. Araport11
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs arabidopsis Araport11) Total hits: 2
InterPro
Analysis Name: InterProScan Analysis for Vicia faba inbred line Hedin/2 v1.0 proteins
Date Performed: 2023-05-12
Sequences
The
following sequences are available for this feature:
mRNA sequence >Vfaba.Hedin2.R1.1g062680.1_vfh_v1 ID=Vfaba.Hedin2.R1.1g062680.1_vfh_v1; Name=Vfaba.Hedin2.R1.1g062680.1; organism=Vicia faba; type=mRNA; length=420bpback to top protein sequence of Vfaba.Hedin2.R1.1g062680.1_vfh_v1 >Vfaba.Hedin2.R1.1g062680.1_vfh_v1 ID=Vfaba.Hedin2.R1.1g062680.1_vfh_v1; Name=Vfaba.Hedin2.R1.1g062680.1_vfh_v1; organism=Vicia faba; type=polypeptide; length=139bpback to top mRNA from alignment at chr1S:403924575..403924994+ Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>Vfaba.Hedin2.R1.1g062680.1_vfh_v1 ID=Vfaba.Hedin2.R1.1g062680.1_vfh_v1; Name=Vfaba.Hedin2.R1.1g062680.1; organism=Vicia faba; type=mRNA; location=Sequence derived from: chr1S:403924575..403924994+ (Vicia fababack to top Annotated Terms
The
following terms have been associated with
this mRNA:
|