Vfaba.Hedin2.R1.1g068520.1

Transcript Overview
NameVfaba.Hedin2.R1.1g068520.1
Unique NameVfaba.Hedin2.R1.1g068520.1_vfh_v1
TypemRNA
OrganismVicia faba (Faba bean)
Sequence length312
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
chr1Schromosomechr1S:444921959..444924120 -Vicia faba inbred line Hedin/2 genome v1.0n/a
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
vfhzwsR147Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
vfhzwsR168Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
asvfhL125Vigna angularis Jingnong 6 genome v1.1Vigna angularis
asvfhL650Vigna angularis Jingnong 6 genome v1.1Vigna angularis
ccvfhL1068Cajanus cajan Asha genome v1.0Cajanus cajan
crvfhL044Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
crvfhL609Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
pvvfhL493Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
psvfhL400Pisum sativum Cameor genome v1aPisum sativum
psvfhL414Pisum sativum Cameor genome v1aPisum sativum
tifvfhL071Vicia faba cv. Tiffany genome v1.0Vicia faba
vfhvuR124Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
vfhvuR171Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
caivfhL042Cicer arietinum ICC 4958 genome v2Cicer arietinum
anvfhL0263Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvfhL0722Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvfhL1034Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvfhL1124Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
vfhvssR123Vicia sativa cv. Studenica genome v1.0Vicia sativa
vfhvuaR112Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
vfhvssR160Vicia sativa cv. Studenica genome v1.0Vicia sativa
vfhvuaR158Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
canvfhL023Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
canvfhL437Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
avjvfhL066Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjvfhL671Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
carvfhL025Cicer arietinum
carvfhL420Cicer arietinum
ccavfhL074Cajanus cajan cv. Asha genome v2.0Cajanus cajan
vfhvumR210Vigna umbellata FF25 genome v1.0Vigna umbellata
vfhvumR215Vigna umbellata FF25 genome v1.0Vigna umbellata
vfhvvaR123Vicia villosa cv. AU Merit genome v1.0Vicia villosa
vasvfhL563Vigna angularis cv. Shumari genome v1.a1Vigna angularis
vasvfhL630Vigna angularis cv. Shumari genome v1.a1Vigna angularis
vfhvstR188Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vfhvstR196Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
pvfvfhL460Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
vfhvunR154Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Vfaba.Hedin2.R1.1g068520Vfaba.Hedin2.R1.1g068520_vfh_v1Vicia fabagene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vfaba.Hedin2.R1.1g068520.1_vfh_v1-exonVfaba.Hedin2.R1.1g068520.1_vfh_v1-exon-chr1S_vfh_v1:444921959..444921983Vicia fabaexon
Vfaba.Hedin2.R1.1g068520.1_vfh_v1-exonVfaba.Hedin2.R1.1g068520.1_vfh_v1-exon-chr1S_vfh_v1:444922916..444922951Vicia fabaexon
Vfaba.Hedin2.R1.1g068520.1_vfh_v1-exonVfaba.Hedin2.R1.1g068520.1_vfh_v1-exon-chr1S_vfh_v1:444923197..444923278Vicia fabaexon
Vfaba.Hedin2.R1.1g068520.1_vfh_v1-exonVfaba.Hedin2.R1.1g068520.1_vfh_v1-exon-chr1S_vfh_v1:444923451..444923536Vicia fabaexon
Vfaba.Hedin2.R1.1g068520.1_vfh_v1-exonVfaba.Hedin2.R1.1g068520.1_vfh_v1-exon-chr1S_vfh_v1:444924038..444924120Vicia fabaexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vfaba.Hedin2.R1.1g068520.1_vfh_v1-cdsVfaba.Hedin2.R1.1g068520.1_vfh_v1-cds-chr1S_vfh_v1:444921959..444921983Vicia fabaCDS
Vfaba.Hedin2.R1.1g068520.1_vfh_v1-cdsVfaba.Hedin2.R1.1g068520.1_vfh_v1-cds-chr1S_vfh_v1:444922916..444922951Vicia fabaCDS
Vfaba.Hedin2.R1.1g068520.1_vfh_v1-cdsVfaba.Hedin2.R1.1g068520.1_vfh_v1-cds-chr1S_vfh_v1:444923197..444923278Vicia fabaCDS
Vfaba.Hedin2.R1.1g068520.1_vfh_v1-cdsVfaba.Hedin2.R1.1g068520.1_vfh_v1-cds-chr1S_vfh_v1:444923451..444923536Vicia fabaCDS
Vfaba.Hedin2.R1.1g068520.1_vfh_v1-cdsVfaba.Hedin2.R1.1g068520.1_vfh_v1-cds-chr1S_vfh_v1:444924038..444924120Vicia fabaCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Vfaba.Hedin2.R1.1g068520.1_vfh_v1Vfaba.Hedin2.R1.1g068520.1_vfh_v1Vicia fabapolypeptide
Vfaba.Hedin2.R1.1g068520.1_vfh_v1Vfaba.Hedin2.R1.1g068520.1_vfh_v1-proteinVicia fabapolypeptide


Homology
[Close]
BLAST of Vfaba.Hedin2.R1.1g068520.1 vs. UniProtKB/TrEMBL
Match: tr|A0A6P4MEX6|A0A6P4MEX6_GOSAR (outer envelope protein 80, chloroplastic-like OS=Gossypium arboreum OX=29729 GN=LOC108456518 PE=4 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.796e-15
Identity = 41/58 (70.69%), Postives = 46/58 (79.31%), Query Frame = 0 
Query:   45 FLISSYLVSLLSYTGKVDLVMNVVERPSGGFSAGGGISSGITSGPLRGLIGSHTAACR 102
            F+    +V++L   GKVDLVMNVVERPSGGFSAGGGISSGITSGPL GLIGS   + R
Sbjct:    4 FVYYRLIVNILD-AGKVDLVMNVVERPSGGFSAGGGISSGITSGPLSGLIGSFAYSHR 60
[Close]
BLAST of Vfaba.Hedin2.R1.1g068520.1 vs. UniProtKB/TrEMBL
Match: tr|A0A396JDA2|A0A396JDA2_MEDTR (Putative bacterial surface antigen (D15) OS=Medicago truncatula OX=3880 GN=MtrunA17_Chr2g0328911 PE=4 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.322e-15
Identity = 40/45 (88.89%), Postives = 41/45 (91.11%), Query Frame = 0 
Query:   58 TGKVDLVMNVVERPSGGFSAGGGISSGITSGPLRGLIGSHTAACR 102
            TGKVDLVMNVVERPSGGFSAGGGISSGITSGPLRGLIGS   + R
Sbjct:  400 TGKVDLVMNVVERPSGGFSAGGGISSGITSGPLRGLIGSFAYSHR 444
[Close]
BLAST of Vfaba.Hedin2.R1.1g068520.1 vs. UniProtKB/TrEMBL
Match: tr|G7IUC7|G7IUC7_MEDTR (Outer membrane OMP85 family protein OS=Medicago truncatula OX=3880 GN=11425763 PE=4 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.914e-15
Identity = 40/45 (88.89%), Postives = 41/45 (91.11%), Query Frame = 0 
Query:   58 TGKVDLVMNVVERPSGGFSAGGGISSGITSGPLRGLIGSHTAACR 102
            TGKVDLVMNVVERPSGGFSAGGGISSGITSGPLRGLIGS   + R
Sbjct:  324 TGKVDLVMNVVERPSGGFSAGGGISSGITSGPLRGLIGSFAYSHR 368
[Close]
BLAST of Vfaba.Hedin2.R1.1g068520.1 vs. UniProtKB/TrEMBL
Match: tr|A0A5D2YVX7|A0A5D2YVX7_GOSMU (Omp85 domain-containing protein OS=Gossypium mustelinum OX=34275 GN=E1A91_A06G139300v1 PE=4 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.977e-15
Identity = 38/44 (86.36%), Postives = 39/44 (88.64%), Query Frame = 0 
Query:   59 GKVDLVMNVVERPSGGFSAGGGISSGITSGPLRGLIGSHTAACR 102
            GKVDLVMNVVERPSGGFSAGGGISSGITSGPL GLIGS   + R
Sbjct:   11 GKVDLVMNVVERPSGGFSAGGGISSGITSGPLSGLIGSFAYSHR 54
[Close]
BLAST of Vfaba.Hedin2.R1.1g068520.1 vs. UniProtKB/TrEMBL
Match: tr|A0A6A6MI38|A0A6A6MI38_HEVBR (POTRA domain-containing protein OS=Hevea brasiliensis OX=3981 GN=GH714_027779 PE=4 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.462e-14
Identity = 40/45 (88.89%), Postives = 41/45 (91.11%), Query Frame = 0 
Query:   58 TGKVDLVMNVVERPSGGFSAGGGISSGITSGPLRGLIGSHTAACR 102
            TGKVDLVMNVVERPSGGFSAGGGISSGITSGPL GLIGS T + R
Sbjct:  256 TGKVDLVMNVVERPSGGFSAGGGISSGITSGPLSGLIGSFTYSHR 300
[Close]
BLAST of Vfaba.Hedin2.R1.1g068520.1 vs. UniProtKB/TrEMBL
Match: tr|B9RIA3|B9RIA3_RICCO (Sorting and assembly machinery (Sam50) protein, putative OS=Ricinus communis OX=3988 GN=RCOM_1577380 PE=4 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.585e-14
Identity = 40/45 (88.89%), Postives = 41/45 (91.11%), Query Frame = 0 
Query:   58 TGKVDLVMNVVERPSGGFSAGGGISSGITSGPLRGLIGSHTAACR 102
            TGKVDLVMNVVERPSGGFSAGGGISSGITSGPL GLIGS T + R
Sbjct:  352 TGKVDLVMNVVERPSGGFSAGGGISSGITSGPLSGLIGSFTYSHR 396
[Close]
BLAST of Vfaba.Hedin2.R1.1g068520.1 vs. UniProtKB/TrEMBL
Match: tr|A0A1S3TWB4|A0A1S3TWB4_VIGRR (outer envelope protein 80, chloroplastic OS=Vigna radiata var. radiata OX=3916 GN=LOC106759423 PE=4 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.643e-14
Identity = 39/45 (86.67%), Postives = 41/45 (91.11%), Query Frame = 0 
Query:   58 TGKVDLVMNVVERPSGGFSAGGGISSGITSGPLRGLIGSHTAACR 102
            TGKVDLVMNVVERPSGGFSAGGGISSGIT+GPLRGLIGS   + R
Sbjct:  327 TGKVDLVMNVVERPSGGFSAGGGISSGITNGPLRGLIGSFAYSHR 371
[Close]
BLAST of Vfaba.Hedin2.R1.1g068520.1 vs. UniProtKB/TrEMBL
Match: tr|A0A151SUN4|A0A151SUN4_CAJCA (Outer envelope protein of 80 kDa OS=Cajanus cajan OX=3821 GN=KK1_013891 PE=4 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.692e-14
Identity = 39/45 (86.67%), Postives = 41/45 (91.11%), Query Frame = 0 
Query:   58 TGKVDLVMNVVERPSGGFSAGGGISSGITSGPLRGLIGSHTAACR 102
            TGKVDLVMNVVERPSGGFSAGGGISSGIT+GPLRGLIGS   + R
Sbjct:  328 TGKVDLVMNVVERPSGGFSAGGGISSGITNGPLRGLIGSFAYSHR 372
[Close]
BLAST of Vfaba.Hedin2.R1.1g068520.1 vs. UniProtKB/TrEMBL
Match: tr|V7BZ90|V7BZ90_PHAVU (POTRA domain-containing protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_005G148500g PE=4 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.709e-14
Identity = 39/45 (86.67%), Postives = 41/45 (91.11%), Query Frame = 0 
Query:   58 TGKVDLVMNVVERPSGGFSAGGGISSGITSGPLRGLIGSHTAACR 102
            TGKVDLVMNVVERPSGGFSAGGGISSGIT+GPLRGLIGS   + R
Sbjct:  327 TGKVDLVMNVVERPSGGFSAGGGISSGITNGPLRGLIGSFAYSHR 371
[Close]
BLAST of Vfaba.Hedin2.R1.1g068520.1 vs. UniProtKB/TrEMBL
Match: tr|I1M513|I1M513_SOYBN (POTRA domain-containing protein OS=Glycine max OX=3847 GN=100801556 PE=4 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 1.710e-14
Identity = 39/45 (86.67%), Postives = 41/45 (91.11%), Query Frame = 0 
Query:   58 TGKVDLVMNVVERPSGGFSAGGGISSGITSGPLRGLIGSHTAACR 102
            TGKVDLVMNVVERPSGGFSAGGGISSGIT+GPLRGLIGS   + R
Sbjct:  337 TGKVDLVMNVVERPSGGFSAGGGISSGITNGPLRGLIGSFAYSHR 381
[Close]
BLAST of Vfaba.Hedin2.R1.1g068520.1 vs. UniProtKB/Swiss-Prot
Match: sp|Q6H7M7|OEP80_ORYSJ (Outer envelope protein 80, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=OEP80 PE=3 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 2.668e-15
Identity = 35/45 (77.78%), Postives = 39/45 (86.67%), Query Frame = 0 
Query:   58 TGKVDLVMNVVERPSGGFSAGGGISSGITSGPLRGLIGSHTAACR 102
            + KVDLVMN+VERPSGGFSAGGGISSGIT+GPL GLIGS   + R
Sbjct:  316 SNKVDLVMNLVERPSGGFSAGGGISSGITNGPLSGLIGSFAYSHR 360
[Close]
BLAST of Vfaba.Hedin2.R1.1g068520.1 vs. UniProtKB/Swiss-Prot
Match: sp|A2X208|OEP80_ORYSI (Outer envelope protein 80, chloroplastic OS=Oryza sativa subsp. indica OX=39946 GN=OEP80 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 3.678e-15
Identity = 35/45 (77.78%), Postives = 39/45 (86.67%), Query Frame = 0 
Query:   58 TGKVDLVMNVVERPSGGFSAGGGISSGITSGPLRGLIGSHTAACR 102
            + KVDLVMN+VERPSGGFSAGGGISSGIT+GPL GLIGS   + R
Sbjct:  316 SNKVDLVMNLVERPSGGFSAGGGISSGITNGPLSGLIGSFAYSHR 360
[Close]
BLAST of Vfaba.Hedin2.R1.1g068520.1 vs. UniProtKB/Swiss-Prot
Match: sp|Q9C5J8|OEP80_ARATH (Outer envelope protein 80, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=OEP80 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 5.851e-15
Identity = 36/45 (80.00%), Postives = 39/45 (86.67%), Query Frame = 0 
Query:   58 TGKVDLVMNVVERPSGGFSAGGGISSGITSGPLRGLIGSHTAACR 102
            +GKVDL+MN VERPSGGFSAGGGISSGITSGPL GLIGS   + R
Sbjct:  384 SGKVDLIMNCVERPSGGFSAGGGISSGITSGPLSGLIGSFAYSHR 428
[Close]
BLAST of Vfaba.Hedin2.R1.1g068520.1 vs. Araport11
Match: AT5G19620.1 (| outer envelope protein of 80 kDa | Chr5:6623323-6627641 FORWARD LENGTH=732 | 201606)

HSP 1 Score: 72.0182 bits (175), Expect = 5.986e-16
Identity = 36/45 (80.00%), Postives = 39/45 (86.67%), Query Frame = 0 
Query:   58 TGKVDLVMNVVERPSGGFSAGGGISSGITSGPLRGLIGSHTAACR 102
            +GKVDL+MN VERPSGGFSAGGGISSGITSGPL GLIGS   + R
Sbjct:  384 SGKVDLIMNCVERPSGGFSAGGGISSGITSGPLSGLIGSFAYSHR 428
The following BLAST results are available for this feature:
BLAST of Vfaba.Hedin2.R1.1g068520.1 vs. UniProtKB/TrEMBL
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs UniProt TrEMBL)
Total hits: 10
Match NameE-valueIdentityDescription
tr|A0A6P4MEX6|A0A6P4MEX6_GOSAR1.796e-1570.69outer envelope protein 80, chloroplastic-like OS=G... [more]
tr|A0A396JDA2|A0A396JDA2_MEDTR6.322e-1588.89Putative bacterial surface antigen (D15) OS=Medica... [more]
tr|G7IUC7|G7IUC7_MEDTR6.914e-1588.89Outer membrane OMP85 family protein OS=Medicago tr... [more]
tr|A0A5D2YVX7|A0A5D2YVX7_GOSMU6.977e-1586.36Omp85 domain-containing protein OS=Gossypium muste... [more]
tr|A0A6A6MI38|A0A6A6MI38_HEVBR1.462e-1488.89POTRA domain-containing protein OS=Hevea brasilien... [more]
tr|B9RIA3|B9RIA3_RICCO1.585e-1488.89Sorting and assembly machinery (Sam50) protein, pu... [more]
tr|A0A1S3TWB4|A0A1S3TWB4_VIGRR1.643e-1486.67outer envelope protein 80, chloroplastic OS=Vigna ... [more]
tr|A0A151SUN4|A0A151SUN4_CAJCA1.692e-1486.67Outer envelope protein of 80 kDa OS=Cajanus cajan ... [more]
tr|V7BZ90|V7BZ90_PHAVU1.709e-1486.67POTRA domain-containing protein OS=Phaseolus vulga... [more]
tr|I1M513|I1M513_SOYBN1.710e-1486.67POTRA domain-containing protein OS=Glycine max OX=... [more]
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BLAST of Vfaba.Hedin2.R1.1g068520.1 vs. UniProtKB/Swiss-Prot
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs UniProt Swissprot)
Total hits: 3
Match NameE-valueIdentityDescription
sp|Q6H7M7|OEP80_ORYSJ2.668e-1577.78Outer envelope protein 80, chloroplastic OS=Oryza ... [more]
sp|A2X208|OEP80_ORYSI3.678e-1577.78Outer envelope protein 80, chloroplastic OS=Oryza ... [more]
sp|Q9C5J8|OEP80_ARATH5.851e-1580.00Outer envelope protein 80, chloroplastic OS=Arabid... [more]
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BLAST of Vfaba.Hedin2.R1.1g068520.1 vs. Araport11
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs arabidopsis Araport11)
Total hits: 1
Match NameE-valueIdentityDescription
AT5G19620.15.986e-1680.00| outer envelope protein of 80 kDa | Chr5:6623323-... [more]
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Sequences
The following sequences are available for this feature:

mRNA sequence

>Vfaba.Hedin2.R1.1g068520.1_vfh_v1 ID=Vfaba.Hedin2.R1.1g068520.1_vfh_v1; Name=Vfaba.Hedin2.R1.1g068520.1; organism=Vicia faba; type=mRNA; length=312bp
ATGGGCTATGATCCGAGTGCGACGCGAGGAGATTCCCCATGGTTCTGTAA
CAAAGAAACACAATCAGTTCTAAGTGTTAACTGTGCAGAACAGGGCTTAA
ATAAGTTAGTCTTCCTCAAGTGGGCCAAATATTTTCTTATTAGCTCTTAC
CTTGTGTCATTGCTATCCTATACAGGGAAGGTTGATTTAGTGATGAATGT
GGTGGAACGTCCTAGTGGAGGATTTTCTGCTGGTGGCGGGATATCAAGTG
GGATTACAAGTGGTCCACTCAGAGGACTTATTGGAAGCCACACAGCTGCT
TGCAGACTATGA
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protein sequence of Vfaba.Hedin2.R1.1g068520.1_vfh_v1

>Vfaba.Hedin2.R1.1g068520.1_vfh_v1 ID=Vfaba.Hedin2.R1.1g068520.1_vfh_v1; Name=Vfaba.Hedin2.R1.1g068520.1_vfh_v1; organism=Vicia faba; type=polypeptide; length=103bp
MGYDPSATRGDSPWFCNKETQSVLSVNCAEQGLNKLVFLKWAKYFLISSY
LVSLLSYTGKVDLVMNVVERPSGGFSAGGGISSGITSGPLRGLIGSHTAA
CRL
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mRNA from alignment at chr1S:444921959..444924120-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Vfaba.Hedin2.R1.1g068520.1_vfh_v1 ID=Vfaba.Hedin2.R1.1g068520.1_vfh_v1; Name=Vfaba.Hedin2.R1.1g068520.1; organism=Vicia faba; type=mRNA; location=Sequence derived from: chr1S:444921959..444924120- (Vicia faba
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