Vfaba.Hedin2.R1.2g126760.1

Transcript Overview
NameVfaba.Hedin2.R1.2g126760.1
Unique NameVfaba.Hedin2.R1.2g126760.1_vfh_v1
TypemRNA
OrganismVicia faba (Faba bean)
Sequence length618
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
chr2chromosomechr2:767887610..767890101 +Vicia faba inbred line Hedin/2 genome v1.0n/a
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
vfhzwsR207Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
vfhzwsR248Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
asvfhL570Vigna angularis Jingnong 6 genome v1.1Vigna angularis
cavfhL285Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
cavfhL404Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ccvfhL1007Cajanus cajan Asha genome v1.0Cajanus cajan
crvfhL520Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
pvvfhL812Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
psvfhL425Pisum sativum Cameor genome v1aPisum sativum
psvfhL463Pisum sativum Cameor genome v1aPisum sativum
psvfhL496Pisum sativum Cameor genome v1aPisum sativum
vfhvfhR125Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
tifvfhL144Vicia faba cv. Tiffany genome v1.0Vicia faba
tifvfhL214Vicia faba cv. Tiffany genome v1.0Vicia faba
vfhvuR290Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
anvfhL0322Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvfhL0368Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvfhL0748Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
vfhvssR233Vicia sativa cv. Studenica genome v1.0Vicia sativa
vfhvssR275Vicia sativa cv. Studenica genome v1.0Vicia sativa
vfhvuaR279Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
canvfhL235Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
canvfhL355Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
avjvfhL577Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjvfhL745Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
carvfhL239Cicer arietinum
carvfhL337Cicer arietinum
ccavfhL298Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccavfhL479Cajanus cajan cv. Asha genome v2.0Cajanus cajan
vfhvumR290Vigna umbellata FF25 genome v1.0Vigna umbellata
vfhvvaR221Vicia villosa cv. AU Merit genome v1.0Vicia villosa
vfhvvaR293Vicia villosa cv. AU Merit genome v1.0Vicia villosa
vasvfhL252Vigna angularis cv. Shumari genome v1.a1Vigna angularis
vfhvstR239Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vfhvstR262Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
pvfvfhL795Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
vfhvunR272Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata

Orthologs
Gene/TranscriptAssemblySpecies
Phvul.009G136700.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
rna-KK1_012550Cajanus cajan Asha genome v1.0Cajanus cajan
Cr_12229.1Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
Vigun09g154100.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
Cc_v2.0_10656.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
Vigst.02G111700.01Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
PvulFLAVERTChr09.1000836Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
rna-XM_004502545.3Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
Psat5g080520.2Pisum sativum Cameor genome v1aPisum sativum
Vigan.02G150600.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
LR48_mrnaVigan04g163300Vigna angularis Jingnong 6 genome v1.1Vigna angularis
jg54437.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Psat05G0245100-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
evm.model.Chr09.2135Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
Vum_02G01223.1Vigna umbellata FF25 genome v1.0Vigna umbellata
rna-TanjilR_19898Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Ca_03945Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
Va04G052010.2Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
XM_058930842.1Vicia villosa cv. AU Merit genome v1.0Vicia villosa
Vigun09g154100.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
Vfaba.Tiffany.R1.2g103200.1Vicia faba cv. Tiffany genome v1.0Vicia faba
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Vfaba.Hedin2.R1.2g126760Vfaba.Hedin2.R1.2g126760_vfh_v1Vicia fabagene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vfaba.Hedin2.R1.2g126760.1_vfh_v1-exonVfaba.Hedin2.R1.2g126760.1_vfh_v1-exon-chr2_vfh_v1:767887610..767887772Vicia fabaexon
Vfaba.Hedin2.R1.2g126760.1_vfh_v1-exonVfaba.Hedin2.R1.2g126760.1_vfh_v1-exon-chr2_vfh_v1:767887911..767887963Vicia fabaexon
Vfaba.Hedin2.R1.2g126760.1_vfh_v1-exonVfaba.Hedin2.R1.2g126760.1_vfh_v1-exon-chr2_vfh_v1:767888217..767888381Vicia fabaexon
Vfaba.Hedin2.R1.2g126760.1_vfh_v1-exonVfaba.Hedin2.R1.2g126760.1_vfh_v1-exon-chr2_vfh_v1:767888583..767888684Vicia fabaexon
Vfaba.Hedin2.R1.2g126760.1_vfh_v1-exonVfaba.Hedin2.R1.2g126760.1_vfh_v1-exon-chr2_vfh_v1:767889967..767890101Vicia fabaexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vfaba.Hedin2.R1.2g126760.1_vfh_v1-cdsVfaba.Hedin2.R1.2g126760.1_vfh_v1-cds-chr2_vfh_v1:767887610..767887772Vicia fabaCDS
Vfaba.Hedin2.R1.2g126760.1_vfh_v1-cdsVfaba.Hedin2.R1.2g126760.1_vfh_v1-cds-chr2_vfh_v1:767887911..767887963Vicia fabaCDS
Vfaba.Hedin2.R1.2g126760.1_vfh_v1-cdsVfaba.Hedin2.R1.2g126760.1_vfh_v1-cds-chr2_vfh_v1:767888217..767888381Vicia fabaCDS
Vfaba.Hedin2.R1.2g126760.1_vfh_v1-cdsVfaba.Hedin2.R1.2g126760.1_vfh_v1-cds-chr2_vfh_v1:767888583..767888684Vicia fabaCDS
Vfaba.Hedin2.R1.2g126760.1_vfh_v1-cdsVfaba.Hedin2.R1.2g126760.1_vfh_v1-cds-chr2_vfh_v1:767889967..767890101Vicia fabaCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Vfaba.Hedin2.R1.2g126760.1_vfh_v1Vfaba.Hedin2.R1.2g126760.1_vfh_v1Vicia fabapolypeptide
Vfaba.Hedin2.R1.2g126760.1_vfh_v1Vfaba.Hedin2.R1.2g126760.1_vfh_v1-proteinVicia fabapolypeptide


Homology
BLAST of Vfaba.Hedin2.R1.2g126760.1 vs. UniProtKB/TrEMBL
Match: tr|G7J680|G7J680_MEDTR (Proline-rich cell wall-like protein OS=Medicago truncatula OX=3880 GN=11422212 PE=4 SV=1)

HSP 1 Score: 339.347 bits (869), Expect = 1.334e-116
Identity = 172/207 (83.09%), Postives = 189/207 (91.30%), Query Frame = 0
Query:    1 MEYEYNRSRSGPQVPMYRAPPSSIYPKIGPHPQSAAPPPPRPFPYQH-NPTLSPSLGLGIKVAIKPEFRITQPPHLLPHVGDIPRSNFQFEFGLERKILAEAEKDNPNWSKFGVDNLPTKASETS-SSKVTSSDPIVTKYIAMGLSQEAVQIAVKNYGDNPTKVQEFVNGYTLLREMGFSSNSVAEALVMHDNDTDKALAHFLNGSS 205
            MEYEYNRSRSGPQVPMYRAPPS IYPKIGPHP SAAP PP   P+QH NP  SPS+GLGIKVAIKPE++I  PPHLLPHVGDIPRSNFQF+FGLERKILAEAEK+NPNW+KFGV+NLPTKAS++S SSKVT++DPIV KYIAMGLS++ V IAVKNYGDNPTKVQEFV GYTLL EMGFSSNSV EAL+M+DNDTDKALA+FLNGSS
Sbjct:    1 MEYEYNRSRSGPQVPMYRAPPS-IYPKIGPHPHSAAPRPP---PFQHQNPNPSPSIGLGIKVAIKPEYKIAPPPHLLPHVGDIPRSNFQFDFGLERKILAEAEKENPNWTKFGVENLPTKASDSSPSSKVTTADPIVNKYIAMGLSRDVVPIAVKNYGDNPTKVQEFVKGYTLLHEMGFSSNSVDEALLMYDNDTDKALAYFLNGSS 203          
BLAST of Vfaba.Hedin2.R1.2g126760.1 vs. UniProtKB/TrEMBL
Match: tr|A0A072V261|A0A072V261_MEDTR (Proline-rich cell wall-like protein OS=Medicago truncatula OX=3880 GN=11422212 PE=4 SV=1)

HSP 1 Score: 331.257 bits (848), Expect = 2.539e-113
Identity = 171/207 (82.61%), Postives = 187/207 (90.34%), Query Frame = 0
Query:    1 MEYEYNRSRSGPQVPMYRAPPSSIYPKIGPHPQSAAPPPPRPFPYQH-NPTLSPSLGLGIKVAIKPEFRITQPPHLLPHVGDIPRSNFQFEFGLERKILAEAEKDNPNWSKFGVDNLPTKASETS-SSKVTSSDPIVTKYIAMGLSQEAVQIAVKNYGDNPTKVQEFVNGYTLLREMGFSSNSVAEALVMHDNDTDKALAHFLNGSS 205
            MEYEYNRSRSGPQVPMYRAPPS IYPKIGPHP SAAP PP   P+QH NP  SPS  LGIKVAIKPE++I  PPHLLPHVGDIPRSNFQF+FGLERKILAEAEK+NPNW+KFGV+NLPTKAS++S SSKVT++DPIV KYIAMGLS++ V IAVKNYGDNPTKVQEFV GYTLL EMGFSSNSV EAL+M+DNDTDKALA+FLNGSS
Sbjct:    1 MEYEYNRSRSGPQVPMYRAPPS-IYPKIGPHPHSAAPRPP---PFQHQNPNPSPSR-LGIKVAIKPEYKIAPPPHLLPHVGDIPRSNFQFDFGLERKILAEAEKENPNWTKFGVENLPTKASDSSPSSKVTTADPIVNKYIAMGLSRDVVPIAVKNYGDNPTKVQEFVKGYTLLHEMGFSSNSVDEALLMYDNDTDKALAYFLNGSS 202          
BLAST of Vfaba.Hedin2.R1.2g126760.1 vs. UniProtKB/TrEMBL
Match: tr|A0A1S2YC14|A0A1S2YC14_CICAR (uncharacterized protein LOC101496118 OS=Cicer arietinum OX=3827 GN=LOC101496118 PE=4 SV=1)

HSP 1 Score: 317.775 bits (813), Expect = 5.665e-108
Identity = 167/206 (81.07%), Postives = 185/206 (89.81%), Query Frame = 0
Query:    1 MEYEYNRSRSGPQVPMYRAPPSSIYPKIGPHPQSAAPPPPRPFPYQHNPTLSPSLGLGIKVAIKPEFRITQPPHLLPHVGDIPRSNFQFEFGLERKILAEAEKDNPNWSKFGVDNLPTKAS-ETSSSKVTSSDPIVTKYIAMGLSQEAVQIAVKNYGDNPTKVQEFVNGYTLLREMGFSSNSVAEALVMHDNDTDKALAHFLNGSS 205
            ME++Y RSRSGPQVPMY APPSSIYPKIGPHP ++A  PP    Y HN T SPS GLGIKV+IKPE++IT PPHLLPHVGDIPRSNFQF+FGLERKILAEAEKDNPNWSKF +DNLPTKAS +TSSSKVT SDP+V KYIA GLS+EAV IAVKNYGD+PTKVQEFVNGYTLLREMGFSS+SVAEALV HDN+TDKALA+FL+G+S
Sbjct:    1 MEHDYYRSRSGPQVPMYGAPPSSIYPKIGPHPHASAAAPPP-LHYHHNSTPSPSSGLGIKVSIKPEYKITPPPHLLPHVGDIPRSNFQFDFGLERKILAEAEKDNPNWSKFAIDNLPTKASFDTSSSKVTGSDPVVNKYIAKGLSREAVPIAVKNYGDDPTKVQEFVNGYTLLREMGFSSSSVAEALVTHDNNTDKALAYFLSGTS 205          
BLAST of Vfaba.Hedin2.R1.2g126760.1 vs. UniProtKB/TrEMBL
Match: tr|I3SQZ2|I3SQZ2_LOTJA (UBA domain-containing protein OS=Lotus japonicus OX=34305 PE=2 SV=1)

HSP 1 Score: 280.026 bits (715), Expect = 5.656e-93
Identity = 154/214 (71.96%), Postives = 174/214 (81.31%), Query Frame = 0
Query:    1 MEYEYNRSRSGPQVP-MYRAPPSS-----IYPKIGPHPQSAAPPPPRPFPYQHNPTLSPSLGLGIKVAIKPEFRITQPPHLLPHVGDIPRSNFQFEFGLERKILAEAEKDNPNWSKFGVDNLPTKASETSSSKVTSS---DPIVTKYIAMGLSQEAVQIAVKNYGDNPTKVQEFVNGYTLLREMGFSSNSVAEALVMHDNDTDKALAHFLNGSS 205
            M+Y++ R+RSG Q P MYRAPPSS     IYPKIGPHP  AA    RP  Y  NP    S GLGI+VAIKP++RIT PPHLLPHV DIPRSNFQF+FGLERK+LAE EKDNPNWSKFG++NLPTK S+ +SS        DP V+KYIAMGL++EAV IA+ +YGDNPTKVQEFVNGYTLLREMGFSS+SVAEALVMHDNDTDKALAHFL+GSS
Sbjct:    1 MDYDF-RTRSGQQQPPMYRAPPSSSSPSSIYPKIGPHPPGAAVG--RPSSYHQNPAPPSSSGLGIRVAIKPDYRITPPPHLLPHVVDIPRSNFQFDFGLERKVLAEGEKDNPNWSKFGLENLPTKVSDHTSSSSPKVTSSDPTVSKYIAMGLNREAVPIAIGHYGDNPTKVQEFVNGYTLLREMGFSSSSVAEALVMHDNDTDKALAHFLSGSS 211          
BLAST of Vfaba.Hedin2.R1.2g126760.1 vs. UniProtKB/TrEMBL
Match: tr|A0A0B2SGY8|A0A0B2SGY8_GLYSO (Uncharacterized protein OS=Glycine soja OX=3848 GN=glysoja_024460 PE=4 SV=1)

HSP 1 Score: 268.085 bits (684), Expect = 6.874e-89
Identity = 130/165 (78.79%), Postives = 147/165 (89.09%), Query Frame = 0
Query:   41 RPFPYQHNPTLSPSLGLGIKVAIKPEFRITQPPHLLPHVGDIPRSNFQFEFGLERKILAEAEKDNPNWSKFGVDNLPTKASETSSSKVTSSDPIVTKYIAMGLSQEAVQIAVKNYGDNPTKVQEFVNGYTLLREMGFSSNSVAEALVMHDNDTDKALAHFLNGSS 205
            RP PYQ NPT  PS G G++V IKPE+RIT PPHL    GD PRSNFQF+FGLERKILAEAEKDNPNWSKFG +N+PTK S++S++KVT+ DPIV+K++AMGLSQEAV IAV+NYGDNPTKVQEFVNGYTLLREMGFSSNSVA+ALVM+DN TDKALAHFLNGSS
Sbjct:    3 RPSPYQQNPT--PSSGFGVRVGIKPEYRITPPPHLSSLAGDNPRSNFQFDFGLERKILAEAEKDNPNWSKFGSENVPTKVSDSSTAKVTALDPIVSKFMAMGLSQEAVPIAVENYGDNPTKVQEFVNGYTLLREMGFSSNSVADALVMNDNHTDKALAHFLNGSS 165          
BLAST of Vfaba.Hedin2.R1.2g126760.1 vs. UniProtKB/TrEMBL
Match: tr|V7AW82|V7AW82_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_009G136700g PE=4 SV=1)

HSP 1 Score: 266.544 bits (680), Expect = 7.883e-88
Identity = 142/205 (69.27%), Postives = 164/205 (80.00%), Query Frame = 0
Query:    1 MEYEYNRSRSGPQVPMYRAPPSSIYPKIGPHPQSAAPPPPRPFPYQHNPTLSPSLGLGIKVAIKPEFRITQPPHLLPHVGDIPRSNFQFEFGLERKILAEAEKDNPNWSKFGVDNLPTKASETSSSKVTSSDPIVTKYIAMGLSQEAVQIAVKNYGDNPTKVQEFVNGYTLLREMGFSSNSVAEALVMHDNDTDKALAHFLNGSS 205
            M+Y++ RSRSGPQVPMYR PPS +Y    P   S           Q NPT S  LG G++VAIKPE+RIT PPHL  H GD  RSNFQF+F LERKILAEA+KDNPNWSKFG +N+PT+ S++S++KVT+ D IV+K+IAMGLSQEAV IAV+NYGDNPTKVQEFV GYTLLREMGFSSNSVAEALV++DN TD ALAHFLNGSS
Sbjct:    7 MDYDF-RSRSGPQVPMYRPPPSPMYRPPPPPSSSPY---------QQNPTPSSGLGFGVRVAIKPEYRITPPPHLSSHAGDNSRSNFQFDFELERKILAEADKDNPNWSKFGSENIPTRVSDSSTAKVTALDSIVSKFIAMGLSQEAVPIAVENYGDNPTKVQEFVKGYTLLREMGFSSNSVAEALVLNDNRTDGALAHFLNGSS 201          
BLAST of Vfaba.Hedin2.R1.2g126760.1 vs. UniProtKB/TrEMBL
Match: tr|A0A072VB95|A0A072VB95_MEDTR (Proline-rich cell wall-like protein OS=Medicago truncatula OX=3880 GN=11422212 PE=4 SV=1)

HSP 1 Score: 264.233 bits (674), Expect = 1.799e-87
Identity = 135/164 (82.32%), Postives = 149/164 (90.85%), Query Frame = 0
Query:    1 MEYEYNRSRSGPQVPMYRAPPSSIYPKIGPHPQSAAPPPPRPFPYQH-NPTLSPSLGLGIKVAIKPEFRITQPPHLLPHVGDIPRSNFQFEFGLERKILAEAEKDNPNWSKFGVDNLPTKASETS-SSKVTSSDPIVTKYIAMGLSQEAVQIAVKNYGDNPTKV 162
            MEYEYNRSRSGPQVPMYRAPPS IYPKIGPHP SAAP   RP P+QH NP  SPS+GLGIKVAIKPE++I  PPHLLPHVGDIPRSNFQF+FGLERKILAEAEK+NPNW+KFGV+NLPTKAS++S SSKVT++DPIV KYIAMGLS++ V IAVKNYGDNPTKV
Sbjct:    1 MEYEYNRSRSGPQVPMYRAPPS-IYPKIGPHPHSAAP---RPPPFQHQNPNPSPSIGLGIKVAIKPEYKIAPPPHLLPHVGDIPRSNFQFDFGLERKILAEAEKENPNWTKFGVENLPTKASDSSPSSKVTTADPIVNKYIAMGLSRDVVPIAVKNYGDNPTKV 160          
BLAST of Vfaba.Hedin2.R1.2g126760.1 vs. UniProtKB/TrEMBL
Match: tr|A0A072V0A8|A0A072V0A8_MEDTR (Proline-rich cell wall-like protein OS=Medicago truncatula OX=3880 GN=11422212 PE=4 SV=1)

HSP 1 Score: 264.233 bits (674), Expect = 2.459e-87
Identity = 128/156 (82.05%), Postives = 146/156 (93.59%), Query Frame = 0
Query:   51 LSPSLGLGIKVAIKPEFRITQPPHLLPHVGDIPRSNFQFEFGLERKILAEAEKDNPNWSKFGVDNLPTKASETS-SSKVTSSDPIVTKYIAMGLSQEAVQIAVKNYGDNPTKVQEFVNGYTLLREMGFSSNSVAEALVMHDNDTDKALAHFLNGSS 205
            L+ ++GLGIKVAIKPE++I  PPHLLPHVGDIPRSNFQF+FGLERKILAEAEK+NPNW+KFGV+NLPTKAS++S SSKVT++DPIV KYIAMGLS++ V IAVKNYGDNPTKVQEFV GYTLL EMGFSSNSV EAL+M+DNDTDKALA+FLNGSS
Sbjct:   15 LNFAVGLGIKVAIKPEYKIAPPPHLLPHVGDIPRSNFQFDFGLERKILAEAEKENPNWTKFGVENLPTKASDSSPSSKVTTADPIVNKYIAMGLSRDVVPIAVKNYGDNPTKVQEFVKGYTLLHEMGFSSNSVDEALLMYDNDTDKALAYFLNGSS 170          
BLAST of Vfaba.Hedin2.R1.2g126760.1 vs. UniProtKB/TrEMBL
Match: tr|A0A5D2EF28|A0A5D2EF28_GOSDA (UBA domain-containing protein OS=Gossypium darwinii OX=34276 GN=ES288_A11G014700v1 PE=4 SV=1)

HSP 1 Score: 265.388 bits (677), Expect = 5.047e-87
Identity = 139/222 (62.61%), Postives = 167/222 (75.23%), Query Frame = 0
Query:    1 MEYEYNRSRSGP----QVPMYRAPP-----------SSIYPKIGPHP--QSAAPPPPRPFPYQHNPTLSPSLGLGIKVAIKPEFRITQPPHLLPHVGDIPRSNFQFEFGLERKILAEAEKDNPNWSKFGVDNLPTKASETSSSKVTSSDPIVTKYIAMGLSQEAVQIAVKNYGDNPTKVQEFVNGYTLLREMGFSSNSVAEALVMHDNDTDKALAHFLNGSS 205
            M+Y++ R+R+GP    Q+P+YR  P           SS+YP+IG  P   S APP  R   +  N + S S GLGI+VA+KPE+RIT PP L P VGDIPRSNFQF+F  ERKILAEAEK+N NWSK G++NL +K  ETSSS   +SDP+V+KYIA GLS+EAV +AV NYGDNPTKV+EFV GY LLREMGFSSN+VAEAL+M+DNDTDKALAHFLN SS
Sbjct:    1 MDYDF-RNRTGPPYEAQIPIYRQQPTSSSSTHPMYGSSMYPRIGGQPAAHSVAPPTTRASSFHQNSSPSSSSGLGIRVALKPEYRITPPPQLSPQVGDIPRSNFQFDFEFERKILAEAEKENMNWSKLGLENLSSKPIETSSSTGANSDPVVSKYIASGLSREAVTVAVANYGDNPTKVREFVTGYNLLREMGFSSNNVAEALLMYDNDTDKALAHFLNSSS 221          
BLAST of Vfaba.Hedin2.R1.2g126760.1 vs. UniProtKB/TrEMBL
Match: tr|A0A5J5TH69|A0A5J5TH69_GOSBA (UBA domain-containing protein OS=Gossypium barbadense OX=3634 GN=ES319_A11G014500v1 PE=4 SV=1)

HSP 1 Score: 265.388 bits (677), Expect = 5.047e-87
Identity = 139/222 (62.61%), Postives = 167/222 (75.23%), Query Frame = 0
Query:    1 MEYEYNRSRSGP----QVPMYRAPP-----------SSIYPKIGPHP--QSAAPPPPRPFPYQHNPTLSPSLGLGIKVAIKPEFRITQPPHLLPHVGDIPRSNFQFEFGLERKILAEAEKDNPNWSKFGVDNLPTKASETSSSKVTSSDPIVTKYIAMGLSQEAVQIAVKNYGDNPTKVQEFVNGYTLLREMGFSSNSVAEALVMHDNDTDKALAHFLNGSS 205
            M+Y++ R+R+GP    Q+P+YR  P           SS+YP+IG  P   S APP  R   +  N + S S GLGI+VA+KPE+RIT PP L P VGDIPRSNFQF+F  ERKILAEAEK+N NWSK G++NL +K  ETSSS   +SDP+V+KYIA GLS+EAV +AV NYGDNPTKV+EFV GY LLREMGFSSN+VAEAL+M+DNDTDKALAHFLN SS
Sbjct:    1 MDYDF-RNRTGPPYEAQIPIYRQQPTSSSSTHPMYGSSMYPRIGGQPAAHSVAPPTTRASSFHQNSSPSSSSGLGIRVALKPEYRITPPPQLSPQVGDIPRSNFQFDFEFERKILAEAEKENMNWSKLGLENLSSKPIETSSSTGANSDPVVSKYIASGLSREAVTVAVANYGDNPTKVREFVTGYNLLREMGFSSNNVAEALLMYDNDTDKALAHFLNSSS 221          
BLAST of Vfaba.Hedin2.R1.2g126760.1 vs. Araport11
Match: AT5G53330.1 (| Ubiquitin-associated/translation elongation factor EF1B protein | Chr5:21639236-21640716 FORWARD LENGTH=221 | 201606)

HSP 1 Score: 227.639 bits (579), Expect = 1.117e-75
Identity = 130/224 (58.04%), Postives = 154/224 (68.75%), Query Frame = 0
Query:    1 MEYEYNRSRSGPQVP--MYRAPPSSI----------YPKIG----PHPQSAAPPPPRPFPYQHNPTLSPSLGLGIKVAIKPEFRITQPPHLLPHVGDIPRSNFQFEFGLERKILAEAEKDNPNWSKFGVDNLPTKASETSSSKV---TSSDPIVTKYIAMGLSQEAVQIAVKNYGDNPTKVQEFVNGYTLLREMGFSSNSVAEALVMHDNDTDKALAHFLNGSS 205
            M+Y+Y     GP  P  MY  P +S           YPKIG    P PQ  +PP  R   +QHN   SPS G+GI+V +KPE+RIT PP LLP VGDI RS+FQF+FGLERK+LAEAEKDNP+WSKFG +N P K  E S S V      D +V KY A GL++EAV IAV NYGDNPTKVQEF NG+T +REMGF +N+VA+AL M +NDTDKALAH L+GSS
Sbjct:    1 MDYDYRNKSGGPSYPRPMYGPPSTSPSPSSNHPMYGYPKIGQQTGPGPQFFSPPE-RNSSFQHN--TSPSSGIGIRVNLKPEYRITPPPQLLPRVGDIHRSSFQFDFGLERKVLAEAEKDNPDWSKFGSENPPAKFHEPSPSSVGQMQGVDHVVMKYTASGLNREAVNIAVANYGDNPTKVQEFANGFTAIREMGFPTNAVADALFMFENDTDKALAHLLHGSS 221          
The following BLAST results are available for this feature:
BLAST of Vfaba.Hedin2.R1.2g126760.1 vs. UniProtKB/TrEMBL
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs UniProt TrEMBL)
Total hits: 10
Match NameE-valueIdentityDescription
tr|G7J680|G7J680_MEDTR1.334e-11683.09Proline-rich cell wall-like protein OS=Medicago tr... [more]
tr|A0A072V261|A0A072V261_MEDTR2.539e-11382.61Proline-rich cell wall-like protein OS=Medicago tr... [more]
tr|A0A1S2YC14|A0A1S2YC14_CICAR5.665e-10881.07uncharacterized protein LOC101496118 OS=Cicer arie... [more]
tr|I3SQZ2|I3SQZ2_LOTJA5.656e-9371.96UBA domain-containing protein OS=Lotus japonicus O... [more]
tr|A0A0B2SGY8|A0A0B2SGY8_GLYSO6.874e-8978.79Uncharacterized protein OS=Glycine soja OX=3848 GN... [more]
tr|V7AW82|V7AW82_PHAVU7.883e-8869.27Uncharacterized protein OS=Phaseolus vulgaris OX=3... [more]
tr|A0A072VB95|A0A072VB95_MEDTR1.799e-8782.32Proline-rich cell wall-like protein OS=Medicago tr... [more]
tr|A0A072V0A8|A0A072V0A8_MEDTR2.459e-8782.05Proline-rich cell wall-like protein OS=Medicago tr... [more]
tr|A0A5D2EF28|A0A5D2EF28_GOSDA5.047e-8762.61UBA domain-containing protein OS=Gossypium darwini... [more]
tr|A0A5J5TH69|A0A5J5TH69_GOSBA5.047e-8762.61UBA domain-containing protein OS=Gossypium barbade... [more]
back to top
BLAST of Vfaba.Hedin2.R1.2g126760.1 vs. UniProtKB/TrEMBL
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs UniProt Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Vfaba.Hedin2.R1.2g126760.1 vs. Araport11
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs arabidopsis Araport11)
Total hits: 1
Match NameE-valueIdentityDescription
AT5G53330.11.117e-7558.04| Ubiquitin-associated/translation elongation fact... [more]
back to top
InterPro
Analysis Name: InterProScan Analysis for Vicia faba inbred line Hedin/2 v1.0 proteins
Date Performed: 2023-05-12
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR042575Ubiquitin-associated protein 1, C-terminalGENE3D1.20.120.1920UBAP1 SOUBA domaincoord: 119..204
e-value: 5.5E-10
score: 41.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 25..43
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..43
NoneNo IPR availableCDDcd14316UBA2_UBAP1_likecoord: 165..201
e-value: 1.68873E-9
score: 49.8337
IPR038870Ubiquitin-associated protein 1PANTHERPTHR15960LD44032Pcoord: 33..203
IPR015940Ubiquitin-associated domainPROSITEPS50030UBAcoord: 161..203
score: 8.860038
IPR009060UBA-like superfamilySUPERFAMILY46934UBA-likecoord: 161..203

Sequences
The following sequences are available for this feature:

mRNA sequence

>Vfaba.Hedin2.R1.2g126760.1_vfh_v1 ID=Vfaba.Hedin2.R1.2g126760.1_vfh_v1; Name=Vfaba.Hedin2.R1.2g126760.1; organism=Vicia faba; type=mRNA; length=618bp
ATGGAGTACGAATATAACAGAAGCAGGTCGGGCCCCCAAGTTCCGATGTA
CCGTGCTCCGCCCTCTTCCATCTACCCTAAGATCGGCCCTCACCCTCAAT
CCGCCGCCCCTCCCCCGCCTCGTCCGTTTCCTTATCAGCACAATCCCACT
CTTTCACCTTCTCTAGGATTGGGCATTAAGGTTGCCATCAAGCCGGAATT
TAGGATCACACAGCCGCCTCATTTATTACCACATGTGGGAGATATTCCAC
GGAGCAACTTCCAGTTTGAATTTGGATTGGAGAGGAAAATTTTGGCCGAA
GCAGAGAAAGATAACCCAAATTGGAGCAAATTTGGGGTAGACAATCTTCC
AACTAAAGCTTCTGAGACATCCTCATCAAAGGTTACTTCTTCAGATCCCA
TTGTGACCAAGTATATAGCCATGGGACTCAGCCAAGAGGCAGTTCAAATC
GCTGTTAAAAATTATGGTGATAATCCAACCAAAGTTCAAGAATTTGTCAA
CGGATACACCCTTCTGCGTGAAATGGGATTTTCATCAAACAGTGTTGCGG
AAGCCTTAGTTATGCATGACAATGATACAGACAAGGCATTGGCACATTTC
CTTAATGGCTCATCATGA
back to top

protein sequence of Vfaba.Hedin2.R1.2g126760.1_vfh_v1

>Vfaba.Hedin2.R1.2g126760.1_vfh_v1 ID=Vfaba.Hedin2.R1.2g126760.1_vfh_v1; Name=Vfaba.Hedin2.R1.2g126760.1_vfh_v1; organism=Vicia faba; type=polypeptide; length=205bp
MEYEYNRSRSGPQVPMYRAPPSSIYPKIGPHPQSAAPPPPRPFPYQHNPT
LSPSLGLGIKVAIKPEFRITQPPHLLPHVGDIPRSNFQFEFGLERKILAE
AEKDNPNWSKFGVDNLPTKASETSSSKVTSSDPIVTKYIAMGLSQEAVQI
AVKNYGDNPTKVQEFVNGYTLLREMGFSSNSVAEALVMHDNDTDKALAHF
LNGSS
back to top

mRNA from alignment at chr2:767887610..767890101+

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>Vfaba.Hedin2.R1.2g126760.1_vfh_v1 ID=Vfaba.Hedin2.R1.2g126760.1_vfh_v1; Name=Vfaba.Hedin2.R1.2g126760.1; organism=Vicia faba; type=mRNA; location=Sequence derived from: chr2:767887610..767890101+ (Vicia faba
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR042575UBAP1_C
IPR038870UBAP1
IPR015940UBA
IPR009060UBA-like_sf
Vocabulary: Biological Process
TermDefinition
GO:0043162ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway
Vocabulary: Cellular Component
TermDefinition
GO:0000813ESCRT I complex
Vocabulary: Molecular Function
TermDefinition
GO:0043130ubiquitin binding
GO:0005515protein binding