Vfaba.Hedin2.R1.5g117600.1

Transcript Overview
NameVfaba.Hedin2.R1.5g117600.1
Unique NameVfaba.Hedin2.R1.5g117600.1_vfh_v1
TypemRNA
OrganismVicia faba (Faba bean)
Sequence length504
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
chr5chromosomechr5:816291716..816293090 +Vicia faba inbred line Hedin/2 genome v1.0n/a
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
vfhzwsR463Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
vfhzwsR495Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
asvfhL438Vigna angularis Jingnong 6 genome v1.1Vigna angularis
asvfhL447Vigna angularis Jingnong 6 genome v1.1Vigna angularis
cavfhL222Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
cavfhL350Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ccvfhL0263Cajanus cajan Asha genome v1.0Cajanus cajan
pvvfhL058Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
crvfhL279Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
crvfhL444Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
pvvfhL666Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
psvfhL239Pisum sativum Cameor genome v1aPisum sativum
psvfhL674Pisum sativum Cameor genome v1aPisum sativum
vfhvfhL184Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
tifvfhL261Vicia faba cv. Tiffany genome v1.0Vicia faba
tifvfhL361Vicia faba cv. Tiffany genome v1.0Vicia faba
vfhvuR538Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
vfhvuR607Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
caivfhL268Cicer arietinum ICC 4958 genome v2Cicer arietinum
caivfhL465Cicer arietinum ICC 4958 genome v2Cicer arietinum
anvfhL0706Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvfhL0852Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvfhL0917Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvfhL1164Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvfhL1253Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
vfhvrvR568Vigna radiata cv. VC1973A genome v6.0Vigna radiata
vfhvrvR615Vigna radiata cv. VC1973A genome v6.0Vigna radiata
vfhvssR616Vicia sativa cv. Studenica genome v1.0Vicia sativa
vfhvssR641Vicia sativa cv. Studenica genome v1.0Vicia sativa
canvfhL191Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
canvfhL309Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
avjvfhL422Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjvfhL515Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
carvfhL191Cicer arietinum
carvfhL296Cicer arietinum
ccavfhL271Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccavfhL361Cajanus cajan cv. Asha genome v2.0Cajanus cajan
vfhvumR648Vigna umbellata FF25 genome v1.0Vigna umbellata
vfhvumR679Vigna umbellata FF25 genome v1.0Vigna umbellata
vfhvvaR567Vicia villosa cv. AU Merit genome v1.0Vicia villosa
vfhvvaR619Vicia villosa cv. AU Merit genome v1.0Vicia villosa
vasvfhL446Vigna angularis cv. Shumari genome v1.a1Vigna angularis
vasvfhL769Vigna angularis cv. Shumari genome v1.a1Vigna angularis
vfhvstR637Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vfhvstR679Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
pvfvfhL060Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvfvfhL643Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
vfhvunR495Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
vfhvunR564Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
Vfaba.Tiffany.R1.5g094880.1Vicia faba cv. Tiffany genome v1.0Vicia faba
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Vfaba.Hedin2.R1.5g117600Vfaba.Hedin2.R1.5g117600_vfh_v1Vicia fabagene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vfaba.Hedin2.R1.5g117600.1_vfh_v1-exonVfaba.Hedin2.R1.5g117600.1_vfh_v1-exon-chr5_vfh_v1:816291716..816291944Vicia fabaexon
Vfaba.Hedin2.R1.5g117600.1_vfh_v1-exonVfaba.Hedin2.R1.5g117600.1_vfh_v1-exon-chr5_vfh_v1:816292473..816292652Vicia fabaexon
Vfaba.Hedin2.R1.5g117600.1_vfh_v1-exonVfaba.Hedin2.R1.5g117600.1_vfh_v1-exon-chr5_vfh_v1:816292996..816293090Vicia fabaexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vfaba.Hedin2.R1.5g117600.1_vfh_v1-cdsVfaba.Hedin2.R1.5g117600.1_vfh_v1-cds-chr5_vfh_v1:816291716..816291944Vicia fabaCDS
Vfaba.Hedin2.R1.5g117600.1_vfh_v1-cdsVfaba.Hedin2.R1.5g117600.1_vfh_v1-cds-chr5_vfh_v1:816292473..816292652Vicia fabaCDS
Vfaba.Hedin2.R1.5g117600.1_vfh_v1-cdsVfaba.Hedin2.R1.5g117600.1_vfh_v1-cds-chr5_vfh_v1:816292996..816293090Vicia fabaCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Vfaba.Hedin2.R1.5g117600.1_vfh_v1Vfaba.Hedin2.R1.5g117600.1_vfh_v1Vicia fabapolypeptide
Vfaba.Hedin2.R1.5g117600.1_vfh_v1Vfaba.Hedin2.R1.5g117600.1_vfh_v1-proteinVicia fabapolypeptide


Homology
[Close]
BLAST of Vfaba.Hedin2.R1.5g117600.1 vs. UniProtKB/TrEMBL
Match: tr|A0A2Z6M3D2|A0A2Z6M3D2_TRISU (Uncharacterized protein OS=Trifolium subterraneum OX=3900 GN=TSUD_102100 PE=4 SV=1)

HSP 1 Score: 234.572 bits (597), Expect = 1.545e-72
Identity = 112/136 (82.35%), Postives = 122/136 (89.71%), Query Frame = 0 
Query:    1 MREQTYRPLLMYTIDMSMVEEFQFFCQVIKDESPSSTARLGYYEMMMWLNFNDEENIQGVCDYIAKNDGEDTFDLRESYLLALCESERKENILEVLEIMDIKKLSSVDSVAKIFQALGRLSLEPVAEKLLFDYKIS 136
            + EQTYRPLLMYTIDM MVEEFQFFC VIK+E PSSTARLGYYEMM+WL   DEE IQG+C+YIA+NDG+DT DLRE+YLLALCES RKENILEVLEIMDIKKLSSVDSVAKIFQ LGRL LEPVAEKLL D++ S
Sbjct:  140 LEEQTYRPLLMYTIDMCMVEEFQFFCHVIKEEIPSSTARLGYYEMMLWLKVKDEEKIQGLCNYIAENDGKDTLDLRENYLLALCESARKENILEVLEIMDIKKLSSVDSVAKIFQTLGRLLLEPVAEKLLLDFRTS 275
[Close]
BLAST of Vfaba.Hedin2.R1.5g117600.1 vs. UniProtKB/TrEMBL
Match: tr|A0A2K3NKZ6|A0A2K3NKZ6_TRIPR (Pentatricopeptide repeat-containing protein OS=Trifolium pratense OX=57577 GN=L195_g000100 PE=4 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 9.458e-69
Identity = 109/136 (80.15%), Postives = 121/136 (88.97%), Query Frame = 0 
Query:    1 MREQTYRPLLMYTIDMSMVEEFQFFCQVIKDESPSSTARLGYYEMMMWLNFNDEENIQGVCDYIAKNDGEDTFDLRESYLLALCESERKENILEVLEIMDIKKLSSVDSVAKIFQALGRLSLEPVAEKLLFDYKIS 136
            + EQTYRPLLMYTIDMSMVEEF  FC  IK+E PSSTARLGYYEMM+WL  NDEE I+G+C++IA+NDGEDT DLRE+YLLALCESERKENILEVLEIMDIKKLSSVDSVAKIFQ LGRL  EPVAEK+L D++ S
Sbjct:  206 LEEQTYRPLLMYTIDMSMVEEFHCFCHAIKEEVPSSTARLGYYEMMLWLKVNDEEKIRGLCNFIAENDGEDTSDLRENYLLALCESERKENILEVLEIMDIKKLSSVDSVAKIFQTLGRLLSEPVAEKILLDFRAS 341
[Close]
BLAST of Vfaba.Hedin2.R1.5g117600.1 vs. UniProtKB/TrEMBL
Match: tr|A0A072VBQ6|A0A072VBQ6_MEDTR (PPR containing plant protein, putative OS=Medicago truncatula OX=3880 GN=11410691 PE=4 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 2.127e-68
Identity = 105/134 (78.36%), Postives = 119/134 (88.81%), Query Frame = 0 
Query:    3 EQTYRPLLMYTIDMSMVEEFQFFCQVIKDESPSSTARLGYYEMMMWLNFNDEENIQGVCDYIAKNDGEDTFDLRESYLLALCESERKENILEVLEIMDIKKLSSVDSVAKIFQALGRLSLEPVAEKLLFDYKIS 136
            E TYRPLL+YTIDM MVEEFQFFC +IK+E PSSTARLGYYEMM+WL  N+EE IQ +C+YIA+ND +DTF LRE+YLLALCESERKENILEVLEIMDIKKLSSV S+AK+FQ LGRL LEPVAE+LL D+K S
Sbjct:  209 EHTYRPLLLYTIDMGMVEEFQFFCHIIKEEVPSSTARLGYYEMMLWLKVNNEEKIQDLCNYIAENDADDTFYLRENYLLALCESERKENILEVLEIMDIKKLSSVGSIAKVFQTLGRLLLEPVAEELLLDFKAS 342
[Close]
BLAST of Vfaba.Hedin2.R1.5g117600.1 vs. UniProtKB/TrEMBL
Match: tr|I3SWR7|I3SWR7_LOTJA (Uncharacterized protein OS=Lotus japonicus OX=34305 PE=2 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 3.460e-68
Identity = 103/146 (70.55%), Postives = 122/146 (83.56%), Query Frame = 0 
Query:    1 MREQTYRPLLMYTIDMSMVEEFQFFCQVIKDESPSSTARLGYYEMMMWLNFNDEENIQGVCDYIAKNDGEDTFDLRESYLLALCESERKENILEVLEIMDIKKLSSVDSVAKIFQALGRLSLEPVAEKLLFDYKISRIPLQFVQSF 146
            + EQTYRPLL+Y IDM MVEEFQFFC VIK+E+PSS  RLGYYE+M+WL  N+EE IQG+ +YIA+NDG+D  +LRESYLLALCES+RKE ILE+LEI+DIKKLSS +SVAKIFQALGRL LEPVAEKLL D+K S      + +F
Sbjct:   18 LEEQTYRPLLLYVIDMHMVEEFQFFCHVIKEENPSSVTRLGYYELMLWLRVNNEEKIQGIYNYIAENDGQDPSNLRESYLLALCESDRKEKILELLEIIDIKKLSSAESVAKIFQALGRLLLEPVAEKLLLDFKTSNYEADNITNF 163
[Close]
BLAST of Vfaba.Hedin2.R1.5g117600.1 vs. UniProtKB/TrEMBL
Match: tr|A0A1S2XDF5|A0A1S2XDF5_CICAR (pentatricopeptide repeat-containing protein At4g04790, mitochondrial-like isoform X2 OS=Cicer arietinum OX=3827 GN=LOC101511805 PE=4 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 2.110e-67
Identity = 104/136 (76.47%), Postives = 122/136 (89.71%), Query Frame = 0 
Query:    1 MREQTYRPLLMYTIDMSMVEEFQFFCQVIKDESPSSTARLGYYEMMMWLNFNDEENIQGVCDYIAKNDGEDTFDLRESYLLALCESERKENILEVLEIMDIKKLSSVDSVAKIFQALGRLSLEPVAEKLLFDYKIS 136
            + E+TYRPLL+Y IDM +VEEF+FFC VIKDE+PSS ARLGYYEM +WL  N+EE IQG+C+YIA+NDGEDTFDLRESYLLALCESER+ENILE LE +DI+K+SSVDSVAKIFQALGRL +EPVAEKLL D+K +
Sbjct:  208 VEERTYRPLLLYLIDMGLVEEFEFFCHVIKDENPSSIARLGYYEMTLWLRVNNEEKIQGLCNYIAENDGEDTFDLRESYLLALCESERRENILEALENIDIQKISSVDSVAKIFQALGRLLVEPVAEKLLLDFKTN 343
[Close]
BLAST of Vfaba.Hedin2.R1.5g117600.1 vs. UniProtKB/TrEMBL
Match: tr|A0A1S2XFQ2|A0A1S2XFQ2_CICAR (pentatricopeptide repeat-containing protein At4g04790, mitochondrial-like isoform X1 OS=Cicer arietinum OX=3827 GN=LOC101511805 PE=4 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 2.205e-67
Identity = 104/136 (76.47%), Postives = 122/136 (89.71%), Query Frame = 0 
Query:    1 MREQTYRPLLMYTIDMSMVEEFQFFCQVIKDESPSSTARLGYYEMMMWLNFNDEENIQGVCDYIAKNDGEDTFDLRESYLLALCESERKENILEVLEIMDIKKLSSVDSVAKIFQALGRLSLEPVAEKLLFDYKIS 136
            + E+TYRPLL+Y IDM +VEEF+FFC VIKDE+PSS ARLGYYEM +WL  N+EE IQG+C+YIA+NDGEDTFDLRESYLLALCESER+ENILE LE +DI+K+SSVDSVAKIFQALGRL +EPVAEKLL D+K +
Sbjct:  208 VEERTYRPLLLYLIDMGLVEEFEFFCHVIKDENPSSIARLGYYEMTLWLRVNNEEKIQGLCNYIAENDGEDTFDLRESYLLALCESERRENILEALENIDIQKISSVDSVAKIFQALGRLLVEPVAEKLLLDFKTN 343
[Close]
BLAST of Vfaba.Hedin2.R1.5g117600.1 vs. UniProtKB/TrEMBL
Match: tr|G7IJL5|G7IJL5_MEDTR (PPR containing plant protein, putative OS=Medicago truncatula OX=3880 GN=11410691 PE=4 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 1.304e-66
Identity = 105/134 (78.36%), Postives = 119/134 (88.81%), Query Frame = 0 
Query:    3 EQTYRPLLMYTIDMSMVEEFQFFCQVIKDESPSSTARLGYYEMMMWLNFNDEENIQGVCDYIAKNDGEDTFDLRESYLLALCESERKENILEVLEIMDIKKLSSVDSVAKIFQALGRLSLEPVAEKLLFDYKIS 136
            E TYRPLL+YTIDM MVEEFQFFC +IK+E PSSTARLGYYEMM+WL  N+EE IQ +C+YIA+ND +DTF LRE+YLLALCESERKENILEVLEIMDIKKLSSV S+AK+FQ LGRL LEPVAE+LL D+K S
Sbjct:  209 EHTYRPLLLYTIDMGMVEEFQFFCHIIKEEVPSSTARLGYYEMMLWLKVNNEEKIQDLCNYIAENDADDTFYLRENYLLALCESERKENILEVLEIMDIKKLSSVGSIAKVFQTLGRLLLEPVAEELLLDFKAS 342
[Close]
BLAST of Vfaba.Hedin2.R1.5g117600.1 vs. UniProtKB/TrEMBL
Match: tr|A0A371F1S7|A0A371F1S7_MUCPR (Pentatricopeptide repeat-containing protein, mitochondrial (Fragment) OS=Mucuna pruriens OX=157652 GN=CR513_48301 PE=4 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 1.172e-62
Identity = 96/136 (70.59%), Postives = 116/136 (85.29%), Query Frame = 0 
Query:    1 MREQTYRPLLMYTIDMSMVEEFQFFCQVIKDESPSSTARLGYYEMMMWLNFNDEENIQGVCDYIAKNDGEDTFDLRESYLLALCESERKENILEVLEIMDIKKLSSVDSVAKIFQALGRLSLEPVAEKLLFDYKIS 136
            ++E+TYRPLL+Y IDM MVEEFQFFC VIKDE+PSS  RLGYYEM++WL  N+EE IQG+C+YIA+N+G+D   +RESYLLALCES+R E IL++LEI+DIK LSS +SVAKIFQALGRL LEPV EK L D+K S
Sbjct:  211 LQEKTYRPLLLYIIDMCMVEEFQFFCVVIKDENPSSVTRLGYYEMLLWLRVNNEEKIQGICNYIAENNGQDMSGIRESYLLALCESDRTEEILKMLEIIDIKNLSSAESVAKIFQALGRLLLEPVVEKFLLDFKTS 346
[Close]
BLAST of Vfaba.Hedin2.R1.5g117600.1 vs. UniProtKB/TrEMBL
Match: tr|K7LW88|K7LW88_SOYBN (PPR_long domain-containing protein OS=Glycine max OX=3847 GN=100306302 PE=3 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 5.606e-61
Identity = 100/136 (73.53%), Postives = 118/136 (86.76%), Query Frame = 0 
Query:    1 MREQTYRPLLMYTIDMSMVEEFQFFCQVIKDESPSSTARLGYYEMMMWLNFNDEENIQGVCDYIAKNDGEDTFDLRESYLLALCESERKENILEVLEIMDIKKLSSVDSVAKIFQALGRLSLEPVAEKLLFDYKIS 136
            ++EQTYRPLL+Y IDM MVEEFQFFC VI+DE+PSS ARLGYYEM+MWL  N+EE IQG+CD IA+N GEDT D++E+YLLALCESER E IL++LEI+DIK LSS +SVAK+FQALGRL LEPVAEK L D+K S
Sbjct:  206 LQEQTYRPLLLYLIDMCMVEEFQFFCVVIEDENPSSVARLGYYEMLMWLKDNNEEKIQGICDNIAENKGEDTSDIQENYLLALCESERMEEILKLLEIIDIKNLSSAESVAKVFQALGRLLLEPVAEKFLLDFKTS 341
[Close]
BLAST of Vfaba.Hedin2.R1.5g117600.1 vs. UniProtKB/TrEMBL
Match: tr|A0A151RX14|A0A151RX14_CAJCA (PPR_long domain-containing protein OS=Cajanus cajan OX=3821 GN=KK1_031257 PE=3 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 4.066e-60
Identity = 97/136 (71.32%), Postives = 117/136 (86.03%), Query Frame = 0 
Query:    1 MREQTYRPLLMYTIDMSMVEEFQFFCQVIKDESPSSTARLGYYEMMMWLNFNDEENIQGVCDYIAKNDGEDTFDLRESYLLALCESERKENILEVLEIMDIKKLSSVDSVAKIFQALGRLSLEPVAEKLLFDYKIS 136
            ++EQTYRPLL+Y IDM MVEEFQFFC VIKDE+PSS  RLGYYEM++WL  ++EE I+G+C+YIA+NDGED  D++ESYLLALCESER E IL++LEI+ IK +SS +SVAKIFQALGRL LEPVAEK L D+K S
Sbjct:  113 LQEQTYRPLLLYMIDMHMVEEFQFFCIVIKDENPSSVTRLGYYEMLLWLKVDNEEKIRGICNYIAENDGEDMSDIQESYLLALCESERTEEILKMLEIIGIKNISSAESVAKIFQALGRLLLEPVAEKFLLDFKTS 248
[Close]
BLAST of Vfaba.Hedin2.R1.5g117600.1 vs. UniProtKB/Swiss-Prot
Match: sp|Q6NQ81|PP304_ARATH (Pentatricopeptide repeat-containing protein At4g04790, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At4g04790 PE=2 SV=2)

HSP 1 Score: 126.331 bits (316), Expect = 7.189e-33
Identity = 64/150 (42.67%), Postives = 97/150 (64.67%), Query Frame = 0 
Query:    1 MREQTYRPLLMYTIDMSMVEEFQFFCQVIKDESPSSTARLGYYEMMMWLNFNDEENIQGVCDYIAKNDGEDTFDLRESYLLALCESERKENILEVLEIMDIKKLSSVDSVAKIFQALGRLSLEPVAEKLLFDYKISRIPLQFVQSFCWIH 150
            + E+ Y PLL Y I M MV+EF  F  VI++ SP S  RLGYYEM++W++  D E I+ +C  I  ++GE    L+E+YLLALC+ ++K ++  +LEI+DI K+ S D +A IF+ LGR SL+ VA + L++ + S   ++ V     I+
Sbjct:  195 IEERVYGPLLGYLIGMDMVDEFHSFKDVIREASPGSVERLGYYEMLLWIHLGDGEKIEELCSTIDGDNGESLSVLQENYLLALCKKDQKYHLERLLEIVDITKVRSSDLLANIFEYLGRFSLDSVASRFLWELRESDEGVKNVSDLISIY 344
[Close]
BLAST of Vfaba.Hedin2.R1.5g117600.1 vs. UniProtKB/Swiss-Prot
Match: sp|O49711|PP335_ARATH (Pentatricopeptide repeat-containing protein At4g21880, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At4g21880 PE=3 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 4.455e-28
Identity = 60/135 (44.44%), Postives = 82/135 (60.74%), Query Frame = 0 
Query:    3 EQTYRPLLMYTIDMSMVEEFQFFCQVIKDESPSSTARLGYYEMMMWLNFNDEENIQGVCDYIAKNDGEDTFDLRESYLLALCESERKENILEVLEIMDIKKLSSVDSVAKIFQALGRLSLEPVAEKLLFDYKISR 137
            E  Y P   Y +DM MV EFQ     IK+  P S  RL YYEM++W+  NDEE I  +C+ +  + G     L+E YL+ALCE + KEN  ++LEI+DI  +SS D++  IF  LG+  LE VA KLL++ +  R
Sbjct:  217 EGAYGPFFKYLVDMEMVAEFQILKDFIKEACPESCGRLVYYEMLLWIQVNDEEKIHKLCNKV-DDSGLSLSILQEYYLVALCEKDSKENFQKLLEIVDITTVSSPDALKSIFGYLGKSLLESVAMKLLWELRDCR 350
[Close]
BLAST of Vfaba.Hedin2.R1.5g117600.1 vs. Araport11
Match: AT4G04790.1 (| Tetratricopeptide repeat (TPR)-like superfamily protein | Chr4:2435007-2439344 REVERSE LENGTH=821 | 201606)

HSP 1 Score: 126.331 bits (316), Expect = 7.355e-34
Identity = 64/150 (42.67%), Postives = 97/150 (64.67%), Query Frame = 0 
Query:    1 MREQTYRPLLMYTIDMSMVEEFQFFCQVIKDESPSSTARLGYYEMMMWLNFNDEENIQGVCDYIAKNDGEDTFDLRESYLLALCESERKENILEVLEIMDIKKLSSVDSVAKIFQALGRLSLEPVAEKLLFDYKISRIPLQFVQSFCWIH 150
            + E+ Y PLL Y I M MV+EF  F  VI++ SP S  RLGYYEM++W++  D E I+ +C  I  ++GE    L+E+YLLALC+ ++K ++  +LEI+DI K+ S D +A IF+ LGR SL+ VA + L++ + S   ++ V     I+
Sbjct:  195 IEERVYGPLLGYLIGMDMVDEFHSFKDVIREASPGSVERLGYYEMLLWIHLGDGEKIEELCSTIDGDNGESLSVLQENYLLALCKKDQKYHLERLLEIVDITKVRSSDLLANIFEYLGRFSLDSVASRFLWELRESDEGVKNVSDLISIY 344
[Close]
BLAST of Vfaba.Hedin2.R1.5g117600.1 vs. Araport11
Match: AT4G04790.3 (| Tetratricopeptide repeat (TPR)-like superfamily protein | Chr4:2435007-2439344 REVERSE LENGTH=817 | 201606)

HSP 1 Score: 125.946 bits (315), Expect = 8.170e-34
Identity = 64/150 (42.67%), Postives = 97/150 (64.67%), Query Frame = 0 
Query:    1 MREQTYRPLLMYTIDMSMVEEFQFFCQVIKDESPSSTARLGYYEMMMWLNFNDEENIQGVCDYIAKNDGEDTFDLRESYLLALCESERKENILEVLEIMDIKKLSSVDSVAKIFQALGRLSLEPVAEKLLFDYKISRIPLQFVQSFCWIH 150
            + E+ Y PLL Y I M MV+EF  F  VI++ SP S  RLGYYEM++W++  D E I+ +C  I  ++GE    L+E+YLLALC+ ++K ++  +LEI+DI K+ S D +A IF+ LGR SL+ VA + L++ + S   ++ V     I+
Sbjct:  191 IEERVYGPLLGYLIGMDMVDEFHSFKDVIREASPGSVERLGYYEMLLWIHLGDGEKIEELCSTIDGDNGESLSVLQENYLLALCKKDQKYHLERLLEIVDITKVRSSDLLANIFEYLGRFSLDSVASRFLWELRESDEGVKNVSDLISIY 340
[Close]
BLAST of Vfaba.Hedin2.R1.5g117600.1 vs. Araport11
Match: AT4G04790.2 (| Tetratricopeptide repeat (TPR)-like superfamily protein | Chr4:2435007-2438728 REVERSE LENGTH=684 | 201606)

HSP 1 Score: 125.946 bits (315), Expect = 8.312e-34
Identity = 64/150 (42.67%), Postives = 97/150 (64.67%), Query Frame = 0 
Query:    1 MREQTYRPLLMYTIDMSMVEEFQFFCQVIKDESPSSTARLGYYEMMMWLNFNDEENIQGVCDYIAKNDGEDTFDLRESYLLALCESERKENILEVLEIMDIKKLSSVDSVAKIFQALGRLSLEPVAEKLLFDYKISRIPLQFVQSFCWIH 150
            + E+ Y PLL Y I M MV+EF  F  VI++ SP S  RLGYYEM++W++  D E I+ +C  I  ++GE    L+E+YLLALC+ ++K ++  +LEI+DI K+ S D +A IF+ LGR SL+ VA + L++ + S   ++ V     I+
Sbjct:   58 IEERVYGPLLGYLIGMDMVDEFHSFKDVIREASPGSVERLGYYEMLLWIHLGDGEKIEELCSTIDGDNGESLSVLQENYLLALCKKDQKYHLERLLEIVDITKVRSSDLLANIFEYLGRFSLDSVASRFLWELRESDEGVKNVSDLISIY 207
[Close]
BLAST of Vfaba.Hedin2.R1.5g117600.1 vs. Araport11
Match: AT4G21880.1 (| Pentatricopeptide repeat (PPR) superfamily protein | Chr4:11605156-11610651 FORWARD LENGTH=843 | 201606)

HSP 1 Score: 112.464 bits (280), Expect = 4.558e-29
Identity = 60/135 (44.44%), Postives = 82/135 (60.74%), Query Frame = 0 
Query:    3 EQTYRPLLMYTIDMSMVEEFQFFCQVIKDESPSSTARLGYYEMMMWLNFNDEENIQGVCDYIAKNDGEDTFDLRESYLLALCESERKENILEVLEIMDIKKLSSVDSVAKIFQALGRLSLEPVAEKLLFDYKISR 137
            E  Y P   Y +DM MV EFQ     IK+  P S  RL YYEM++W+  NDEE I  +C+ +  + G     L+E YL+ALCE + KEN  ++LEI+DI  +SS D++  IF  LG+  LE VA KLL++ +  R
Sbjct:  217 EGAYGPFFKYLVDMEMVAEFQILKDFIKEACPESCGRLVYYEMLLWIQVNDEEKIHKLCNKV-DDSGLSLSILQEYYLVALCEKDSKENFQKLLEIVDITTVSSPDALKSIFGYLGKSLLESVAMKLLWELRDCR 350
[Close]
BLAST of Vfaba.Hedin2.R1.5g117600.1 vs. Araport11
Match: AT4G21880.2 (| Pentatricopeptide repeat (PPR) superfamily protein | Chr4:11605363-11610651 FORWARD LENGTH=799 | 201606)

HSP 1 Score: 112.464 bits (280), Expect = 4.741e-29
Identity = 60/135 (44.44%), Postives = 82/135 (60.74%), Query Frame = 0 
Query:    3 EQTYRPLLMYTIDMSMVEEFQFFCQVIKDESPSSTARLGYYEMMMWLNFNDEENIQGVCDYIAKNDGEDTFDLRESYLLALCESERKENILEVLEIMDIKKLSSVDSVAKIFQALGRLSLEPVAEKLLFDYKISR 137
            E  Y P   Y +DM MV EFQ     IK+  P S  RL YYEM++W+  NDEE I  +C+ +  + G     L+E YL+ALCE + KEN  ++LEI+DI  +SS D++  IF  LG+  LE VA KLL++ +  R
Sbjct:  173 EGAYGPFFKYLVDMEMVAEFQILKDFIKEACPESCGRLVYYEMLLWIQVNDEEKIHKLCNKV-DDSGLSLSILQEYYLVALCEKDSKENFQKLLEIVDITTVSSPDALKSIFGYLGKSLLESVAMKLLWELRDCR 306
The following BLAST results are available for this feature:
BLAST of Vfaba.Hedin2.R1.5g117600.1 vs. UniProtKB/TrEMBL
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs UniProt TrEMBL)
Total hits: 10
Match NameE-valueIdentityDescription
tr|A0A2Z6M3D2|A0A2Z6M3D2_TRISU1.545e-7282.35Uncharacterized protein OS=Trifolium subterraneum ... [more]
tr|A0A2K3NKZ6|A0A2K3NKZ6_TRIPR9.458e-6980.15Pentatricopeptide repeat-containing protein OS=Tri... [more]
tr|A0A072VBQ6|A0A072VBQ6_MEDTR2.127e-6878.36PPR containing plant protein, putative OS=Medicago... [more]
tr|I3SWR7|I3SWR7_LOTJA3.460e-6870.55Uncharacterized protein OS=Lotus japonicus OX=3430... [more]
tr|A0A1S2XDF5|A0A1S2XDF5_CICAR2.110e-6776.47pentatricopeptide repeat-containing protein At4g04... [more]
tr|A0A1S2XFQ2|A0A1S2XFQ2_CICAR2.205e-6776.47pentatricopeptide repeat-containing protein At4g04... [more]
tr|G7IJL5|G7IJL5_MEDTR1.304e-6678.36PPR containing plant protein, putative OS=Medicago... [more]
tr|A0A371F1S7|A0A371F1S7_MUCPR1.172e-6270.59Pentatricopeptide repeat-containing protein, mitoc... [more]
tr|K7LW88|K7LW88_SOYBN5.606e-6173.53PPR_long domain-containing protein OS=Glycine max ... [more]
tr|A0A151RX14|A0A151RX14_CAJCA4.066e-6071.32PPR_long domain-containing protein OS=Cajanus caja... [more]
back to top
BLAST of Vfaba.Hedin2.R1.5g117600.1 vs. UniProtKB/Swiss-Prot
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs UniProt Swissprot)
Total hits: 2
Match NameE-valueIdentityDescription
sp|Q6NQ81|PP304_ARATH7.189e-3342.67Pentatricopeptide repeat-containing protein At4g04... [more]
sp|O49711|PP335_ARATH4.455e-2844.44Pentatricopeptide repeat-containing protein At4g21... [more]
back to top
BLAST of Vfaba.Hedin2.R1.5g117600.1 vs. Araport11
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs arabidopsis Araport11)
Total hits: 5
Match NameE-valueIdentityDescription
AT4G04790.17.355e-3442.67| Tetratricopeptide repeat (TPR)-like superfamily ... [more]
AT4G04790.38.170e-3442.67| Tetratricopeptide repeat (TPR)-like superfamily ... [more]
AT4G04790.28.312e-3442.67| Tetratricopeptide repeat (TPR)-like superfamily ... [more]
AT4G21880.14.558e-2944.44| Pentatricopeptide repeat (PPR) superfamily prote... [more]
AT4G21880.24.741e-2944.44| Pentatricopeptide repeat (PPR) superfamily prote... [more]
back to top
InterPro
Analysis Name: InterProScan Analysis for Vicia faba inbred line Hedin/2 v1.0 proteins
Date Performed: 2023-05-12
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR47262OS02G0132600 PROTEINcoord: 2..148

Sequences
The following sequences are available for this feature:

mRNA sequence

>Vfaba.Hedin2.R1.5g117600.1_vfh_v1 ID=Vfaba.Hedin2.R1.5g117600.1_vfh_v1; Name=Vfaba.Hedin2.R1.5g117600.1; organism=Vicia faba; type=mRNA; length=504bp
ATGAGGGAACAAACATATCGCCCACTTCTTATGTATACAATTGACATGAG
TATGGTTGAAGAGTTTCAGTTTTTCTGTCAAGTTATCAAAGATGAGAGTC
CCAGTTCAACTGCAAGACTGGGTTACTATGAAATGATGATGTGGTTAAAC
TTTAATGATGAAGAAAATATTCAGGGTGTTTGTGATTATATTGCTAAGAA
TGATGGCGAGGACACTTTTGATTTACGAGAAAGTTATTTATTGGCTCTTT
GTGAGAGTGAAAGGAAGGAGAATATTTTAGAGGTGTTGGAAATCATGGAC
ATAAAAAAGCTTTCATCTGTTGACTCTGTAGCAAAGATATTTCAGGCATT
GGGAAGACTATCATTGGAACCTGTTGCGGAGAAACTCCTTTTTGATTACA
AAATAAGCAGAATTCCGTTGCAGTTTGTTCAAAGTTTCTGTTGGATTCAT
GTAAAACTTGGTAGAAACAAACACCCCAATTCATATAAGATATCAATTCA
TTAG
back to top

protein sequence of Vfaba.Hedin2.R1.5g117600.1_vfh_v1

>Vfaba.Hedin2.R1.5g117600.1_vfh_v1 ID=Vfaba.Hedin2.R1.5g117600.1_vfh_v1; Name=Vfaba.Hedin2.R1.5g117600.1_vfh_v1; organism=Vicia faba; type=polypeptide; length=167bp
MREQTYRPLLMYTIDMSMVEEFQFFCQVIKDESPSSTARLGYYEMMMWLN
FNDEENIQGVCDYIAKNDGEDTFDLRESYLLALCESERKENILEVLEIMD
IKKLSSVDSVAKIFQALGRLSLEPVAEKLLFDYKISRIPLQFVQSFCWIH
VKLGRNKHPNSYKISIH
back to top

mRNA from alignment at chr5:816291716..816293090+

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>Vfaba.Hedin2.R1.5g117600.1_vfh_v1 ID=Vfaba.Hedin2.R1.5g117600.1_vfh_v1; Name=Vfaba.Hedin2.R1.5g117600.1; organism=Vicia faba; type=mRNA; location=Sequence derived from: chr5:816291716..816293090+ (Vicia faba
back to top