Vfaba.Hedin2.R1.5g178360.1
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Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses Orthologs
Syntenic blocks Orthologs Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of Vfaba.Hedin2.R1.5g178360.1 vs. UniProtKB/TrEMBL
Match: tr|A0A445BBQ9|A0A445BBQ9_ARAHY (Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_A10g051145 PE=4 SV=1) HSP 1 Score: 142.895 bits (359), Expect = 2.217e-42 Identity = 66/70 (94.29%), Postives = 68/70 (97.14%), Query Frame = 0 Query: 29 EMKKGVHPQKQWISYVTQSGRLMHVMMTKIHPVGKVYHFRAKRQMAESLGQIAKFRRRFGLENPEATEKK 98
EMKKGVHPQKQWISYVTQ+GRLMHVMMTKIHPVGKVYHFRA+RQMAESLGQIAKFRRRFGLENPE T KK
Sbjct: 20 EMKKGVHPQKQWISYVTQTGRLMHVMMTKIHPVGKVYHFRARRQMAESLGQIAKFRRRFGLENPETTPKK 89
BLAST of Vfaba.Hedin2.R1.5g178360.1 vs. UniProtKB/TrEMBL
Match: tr|A0A444WYN4|A0A444WYN4_ARAHY (Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_B10g101126 PE=4 SV=1) HSP 1 Score: 141.354 bits (355), Expect = 1.052e-41 Identity = 65/71 (91.55%), Postives = 69/71 (97.18%), Query Frame = 0 Query: 28 TEMKKGVHPQKQWISYVTQSGRLMHVMMTKIHPVGKVYHFRAKRQMAESLGQIAKFRRRFGLENPEATEKK 98
+EMKKGVHPQKQWI+YVTQ+GRLMHVMMTKIHPVGKVYHFRA+RQMAESLGQIAKFRRRFGLENPE T KK
Sbjct: 23 SEMKKGVHPQKQWITYVTQTGRLMHVMMTKIHPVGKVYHFRARRQMAESLGQIAKFRRRFGLENPETTPKK 93
BLAST of Vfaba.Hedin2.R1.5g178360.1 vs. UniProtKB/TrEMBL
Match: tr|A0A2Z6MLP8|A0A2Z6MLP8_TRISU (Uncharacterized protein OS=Trifolium subterraneum OX=3900 GN=TSUD_48950 PE=4 SV=1) HSP 1 Score: 141.739 bits (356), Expect = 1.633e-41 Identity = 64/71 (90.14%), Postives = 70/71 (98.59%), Query Frame = 0 Query: 28 TEMKKGVHPQKQWISYVTQSGRLMHVMMTKIHPVGKVYHFRAKRQMAESLGQIAKFRRRFGLENPEATEKK 98
+EMKKG+HPQKQWISYVTQ+GRLM VMMTKIHPVGKVYHFRAKRQMAESLGQIAKF+RR+GLENPEA+EKK
Sbjct: 44 SEMKKGIHPQKQWISYVTQTGRLMTVMMTKIHPVGKVYHFRAKRQMAESLGQIAKFKRRYGLENPEASEKK 114
BLAST of Vfaba.Hedin2.R1.5g178360.1 vs. UniProtKB/TrEMBL
Match: tr|I1LZ27|I1LZ27_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=102667101 PE=4 SV=1) HSP 1 Score: 139.813 bits (351), Expect = 2.190e-41 Identity = 65/68 (95.59%), Postives = 66/68 (97.06%), Query Frame = 0 Query: 30 MKKGVHPQKQWISYVTQSGRLMHVMMTKIHPVGKVYHFRAKRQMAESLGQIAKFRRRFGLENPEATEK 97
MKKGVHPQKQWISYVTQ+GRLMHVMMTKIHPVGKVYHFRAKRQMAESLGQIAKFRRRFGLENPE EK
Sbjct: 1 MKKGVHPQKQWISYVTQTGRLMHVMMTKIHPVGKVYHFRAKRQMAESLGQIAKFRRRFGLENPEGNEK 68
BLAST of Vfaba.Hedin2.R1.5g178360.1 vs. UniProtKB/TrEMBL
Match: tr|A0A445HFI5|A0A445HFI5_GLYSO (Uncharacterized protein OS=Glycine soja OX=3848 GN=D0Y65_036637 PE=4 SV=1) HSP 1 Score: 139.813 bits (351), Expect = 2.190e-41 Identity = 65/68 (95.59%), Postives = 66/68 (97.06%), Query Frame = 0 Query: 30 MKKGVHPQKQWISYVTQSGRLMHVMMTKIHPVGKVYHFRAKRQMAESLGQIAKFRRRFGLENPEATEK 97
MKKGVHPQKQWISYVTQ+GRLMHVMMTKIHPVGKVYHFRAKRQMAESLGQIAKFRRRFGLENPE EK
Sbjct: 1 MKKGVHPQKQWISYVTQTGRLMHVMMTKIHPVGKVYHFRAKRQMAESLGQIAKFRRRFGLENPEGNEK 68
BLAST of Vfaba.Hedin2.R1.5g178360.1 vs. UniProtKB/TrEMBL
Match: tr|A0A1S3VHZ4|A0A1S3VHZ4_VIGRR (uncharacterized protein LOC106775379 OS=Vigna radiata var. radiata OX=3916 GN=LOC106775379 PE=4 SV=1) HSP 1 Score: 139.043 bits (349), Expect = 4.005e-41 Identity = 65/68 (95.59%), Postives = 66/68 (97.06%), Query Frame = 0 Query: 30 MKKGVHPQKQWISYVTQSGRLMHVMMTKIHPVGKVYHFRAKRQMAESLGQIAKFRRRFGLENPEATEK 97
MKKGVHPQKQWISYVTQ+GRLMHVMMTKIHPVGKVYHFRAKRQMAESLGQIAKFRRRFGLENP A EK
Sbjct: 1 MKKGVHPQKQWISYVTQTGRLMHVMMTKIHPVGKVYHFRAKRQMAESLGQIAKFRRRFGLENPAANEK 68
BLAST of Vfaba.Hedin2.R1.5g178360.1 vs. UniProtKB/TrEMBL
Match: tr|A0A6P4BJ69|A0A6P4BJ69_ARADU (uncharacterized protein LOC107468322 OS=Arachis duranensis OX=130453 GN=LOC107468322 PE=4 SV=1) HSP 1 Score: 139.043 bits (349), Expect = 4.028e-41 Identity = 65/69 (94.20%), Postives = 67/69 (97.10%), Query Frame = 0 Query: 30 MKKGVHPQKQWISYVTQSGRLMHVMMTKIHPVGKVYHFRAKRQMAESLGQIAKFRRRFGLENPEATEKK 98
MKKGVHPQKQWISYVTQ+GRLMHVMMTKIHPVGKVYHFRA+RQMAESLGQIAKFRRRFGLENPE T KK
Sbjct: 1 MKKGVHPQKQWISYVTQTGRLMHVMMTKIHPVGKVYHFRARRQMAESLGQIAKFRRRFGLENPETTPKK 69
BLAST of Vfaba.Hedin2.R1.5g178360.1 vs. UniProtKB/TrEMBL
Match: tr|A0A445IIC3|A0A445IIC3_GLYSO (Uncharacterized protein OS=Glycine soja OX=3848 GN=D0Y65_026056 PE=4 SV=1) HSP 1 Score: 139.043 bits (349), Expect = 4.350e-41 Identity = 65/69 (94.20%), Postives = 66/69 (95.65%), Query Frame = 0 Query: 30 MKKGVHPQKQWISYVTQSGRLMHVMMTKIHPVGKVYHFRAKRQMAESLGQIAKFRRRFGLENPEATEKK 98
MKKGVHPQKQWISYVTQ+GRLMHVMMTKIHPVGKVYHFRAKRQMAESLGQIAKFRRRFGLEN E EKK
Sbjct: 1 MKKGVHPQKQWISYVTQTGRLMHVMMTKIHPVGKVYHFRAKRQMAESLGQIAKFRRRFGLENSEGNEKK 69
BLAST of Vfaba.Hedin2.R1.5g178360.1 vs. UniProtKB/TrEMBL
Match: tr|I1L8T6|I1L8T6_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_10G051000 PE=4 SV=1) HSP 1 Score: 139.043 bits (349), Expect = 4.350e-41 Identity = 65/69 (94.20%), Postives = 66/69 (95.65%), Query Frame = 0 Query: 30 MKKGVHPQKQWISYVTQSGRLMHVMMTKIHPVGKVYHFRAKRQMAESLGQIAKFRRRFGLENPEATEKK 98
MKKGVHPQKQWISYVTQ+GRLMHVMMTKIHPVGKVYHFRAKRQMAESLGQIAKFRRRFGLEN E EKK
Sbjct: 1 MKKGVHPQKQWISYVTQTGRLMHVMMTKIHPVGKVYHFRAKRQMAESLGQIAKFRRRFGLENSEGNEKK 69
BLAST of Vfaba.Hedin2.R1.5g178360.1 vs. UniProtKB/TrEMBL
Match: tr|I3T4D3|I3T4D3_LOTJA (Uncharacterized protein OS=Lotus japonicus OX=34305 PE=2 SV=1) HSP 1 Score: 137.502 bits (345), Expect = 1.724e-40 Identity = 64/68 (94.12%), Postives = 66/68 (97.06%), Query Frame = 0 Query: 30 MKKGVHPQKQWISYVTQSGRLMHVMMTKIHPVGKVYHFRAKRQMAESLGQIAKFRRRFGLENPEATEK 97
MKKGVHPQKQWISYVTQ+GRLMHVMM KIHPVGKVYHFRAKRQMAESLGQIAKFRRRFGLENPEA +K
Sbjct: 1 MKKGVHPQKQWISYVTQTGRLMHVMMAKIHPVGKVYHFRAKRQMAESLGQIAKFRRRFGLENPEADKK 68
BLAST of Vfaba.Hedin2.R1.5g178360.1 vs. Araport11
Match: AT5G55125.2 (| Ribosomal protein L31 | Chr5:22372737-22372967 FORWARD LENGTH=76 | 201606) HSP 1 Score: 108.612 bits (270), Expect = 1.912e-32 Identity = 50/58 (86.21%), Postives = 55/58 (94.83%), Query Frame = 0 Query: 30 MKKGVHPQKQWISYVTQSGRLMHVMMTKIHPVGKVYHFRAKRQMAESLGQIAKFRRRF 87
MKKG+HPQ QWISYVTQSGRLMHVMMT+IH VGKVYHF AKRQMA+S+GQIAKF+RRF
Sbjct: 1 MKKGLHPQMQWISYVTQSGRLMHVMMTRIHHVGKVYHFGAKRQMAQSIGQIAKFKRRF 58
BLAST of Vfaba.Hedin2.R1.5g178360.1 vs. Araport11
Match: AT5G55125.1 (| Ribosomal protein L31 | Chr5:22372737-22372967 FORWARD LENGTH=76 | 201606) HSP 1 Score: 108.612 bits (270), Expect = 1.912e-32 Identity = 50/58 (86.21%), Postives = 55/58 (94.83%), Query Frame = 0 Query: 30 MKKGVHPQKQWISYVTQSGRLMHVMMTKIHPVGKVYHFRAKRQMAESLGQIAKFRRRF 87
MKKG+HPQ QWISYVTQSGRLMHVMMT+IH VGKVYHF AKRQMA+S+GQIAKF+RRF
Sbjct: 1 MKKGLHPQMQWISYVTQSGRLMHVMMTRIHHVGKVYHFGAKRQMAQSIGQIAKFKRRF 58 The following BLAST results are available for this feature:
BLAST of Vfaba.Hedin2.R1.5g178360.1 vs. UniProtKB/TrEMBL
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs UniProt TrEMBL) Total hits: 10 Position : 0 Zoom : x 1
BLAST of Vfaba.Hedin2.R1.5g178360.1 vs. UniProtKB/TrEMBL
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs UniProt Swissprot) Total hits: 0 Position : 0 Zoom : x 1
BLAST of Vfaba.Hedin2.R1.5g178360.1 vs. Araport11
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs arabidopsis Araport11) Total hits: 2 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan Analysis for Vicia faba inbred line Hedin/2 v1.0 proteins
Date Performed: 2023-05-12 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >Vfaba.Hedin2.R1.5g178360.1_vfh_v1 ID=Vfaba.Hedin2.R1.5g178360.1_vfh_v1; Name=Vfaba.Hedin2.R1.5g178360.1; organism=Vicia faba; type=mRNA; length=297bpback to top protein sequence of Vfaba.Hedin2.R1.5g178360.1_vfh_v1 >Vfaba.Hedin2.R1.5g178360.1_vfh_v1 ID=Vfaba.Hedin2.R1.5g178360.1_vfh_v1; Name=Vfaba.Hedin2.R1.5g178360.1_vfh_v1; organism=Vicia faba; type=polypeptide; length=98bpback to top mRNA from alignment at chr5:1238062205..1238064648+ Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>Vfaba.Hedin2.R1.5g178360.1_vfh_v1 ID=Vfaba.Hedin2.R1.5g178360.1_vfh_v1; Name=Vfaba.Hedin2.R1.5g178360.1; organism=Vicia faba; type=mRNA; location=Sequence derived from: chr5:1238062205..1238064648+ (Vicia fababack to top Annotated Terms
The
following terms have been associated with
this mRNA:
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