Vfaba.Hedin2.R1.5g181040.1

Transcript Overview
NameVfaba.Hedin2.R1.5g181040.1
Unique NameVfaba.Hedin2.R1.5g181040.1_vfh_v1
TypemRNA
OrganismVicia faba (Faba bean)
Sequence length405
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
chr5chromosomechr5:1252965455..1252965859 -Vicia faba inbred line Hedin/2 genome v1.0n/a
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
vfhzwsR464Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
vfhzwsR497Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
cavfhL223Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
cavfhL349Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ccvfhL0662Cajanus cajan Asha genome v1.0Cajanus cajan
ccvfhL0789Cajanus cajan Asha genome v1.0Cajanus cajan
crvfhL442Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
crvfhL443Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
vfhvfhL183Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
tifvfhL266Vicia faba cv. Tiffany genome v1.0Vicia faba
tifvfhL361Vicia faba cv. Tiffany genome v1.0Vicia faba
caivfhL263Cicer arietinum ICC 4958 genome v2Cicer arietinum
caivfhL468Cicer arietinum ICC 4958 genome v2Cicer arietinum
anvfhL0443Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvfhL0638Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvfhL0699Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvfhL0854Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvfhL1170Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
vfhvrvR559Vigna radiata cv. VC1973A genome v6.0Vigna radiata
vfhvrvR561Vigna radiata cv. VC1973A genome v6.0Vigna radiata
vfhvrvR608Vigna radiata cv. VC1973A genome v6.0Vigna radiata
vfhvssR616Vicia sativa cv. Studenica genome v1.0Vicia sativa
vfhvssR640Vicia sativa cv. Studenica genome v1.0Vicia sativa
canvfhL192Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
canvfhL301Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
carvfhL191Cicer arietinum
carvfhL295Cicer arietinum
ccavfhL264Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccavfhL362Cajanus cajan cv. Asha genome v2.0Cajanus cajan
vfhvumR646Vigna umbellata FF25 genome v1.0Vigna umbellata
vfhvumR707Vigna umbellata FF25 genome v1.0Vigna umbellata
vfhvumR709Vigna umbellata FF25 genome v1.0Vigna umbellata
vfhvvaR563Vicia villosa cv. AU Merit genome v1.0Vicia villosa
vfhvvaR596Vicia villosa cv. AU Merit genome v1.0Vicia villosa
vasvfhL538Vigna angularis cv. Shumari genome v1.a1Vigna angularis
vasvfhL539Vigna angularis cv. Shumari genome v1.a1Vigna angularis
vasvfhL768Vigna angularis cv. Shumari genome v1.a1Vigna angularis
pvfvfhL552Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvfvfhL644Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Vfaba.Hedin2.R1.5g181040Vfaba.Hedin2.R1.5g181040_vfh_v1Vicia fabagene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vfaba.Hedin2.R1.5g181040.1_vfh_v1-exonVfaba.Hedin2.R1.5g181040.1_vfh_v1-exon-chr5_vfh_v1:1252965455..1252965859Vicia fabaexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vfaba.Hedin2.R1.5g181040.1_vfh_v1-cdsVfaba.Hedin2.R1.5g181040.1_vfh_v1-cds-chr5_vfh_v1:1252965455..1252965859Vicia fabaCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Vfaba.Hedin2.R1.5g181040.1_vfh_v1Vfaba.Hedin2.R1.5g181040.1_vfh_v1Vicia fabapolypeptide
Vfaba.Hedin2.R1.5g181040.1_vfh_v1Vfaba.Hedin2.R1.5g181040.1_vfh_v1-proteinVicia fabapolypeptide


Homology
BLAST of Vfaba.Hedin2.R1.5g181040.1 vs. UniProtKB/TrEMBL
Match: tr|A0A2K3KR12|A0A2K3KR12_TRIPR (Putative copia-type protein (Fragment) OS=Trifolium pratense OX=57577 GN=L195_g056324 PE=4 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 5.089e-57
Identity = 87/134 (64.93%), Postives = 106/134 (79.10%), Query Frame = 0
Query:    1 MLAGNNFAEISFVKAFLHDSFKIKDLGNLRYFLGIEVVRSSKGILINQRKYTLELLEESGQLATKPSKTPYDPSLKLNCPDSPIYKDETQYKRLIGRLLYLTTTRPDISFVVQQLSQHVSKSQVVHFKVVIRVL 134
            +LAG++ AEI  VK FL   F+IKDLG LR+FLG+E+ RS  GIL+NQRKYTL+LL +SG LA KP  TPYD SLKL+  DSP+Y DE+ ++RLIGRLLYLTTTRPDI+F VQQLSQ VS+ Q +HF+   RVL
Sbjct:   66 VLAGDDLAEIQHVKTFLDHQFRIKDLGKLRFFLGLEIARSPSGILLNQRKYTLDLLSDSGHLAVKPCSTPYDSSLKLHDADSPLYHDESAFRRLIGRLLYLTTTRPDIAFAVQQLSQFVSRPQNIHFQAATRVL 199          
BLAST of Vfaba.Hedin2.R1.5g181040.1 vs. UniProtKB/TrEMBL
Match: tr|A0A2K3MSB5|A0A2K3MSB5_TRIPR (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Trifolium pratense OX=57577 GN=L195_g016769 PE=4 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 2.093e-52
Identity = 90/134 (67.16%), Postives = 109/134 (81.34%), Query Frame = 0
Query:    1 MLAGNNFAEISFVKAFLHDSFKIKDLGNLRYFLGIEVVRSSKGILINQRKYTLELLEESGQLATKPSKTPYDPSLKLNCPDSPIYKDETQYKRLIGRLLYLTTTRPDISFVVQQLSQHVSKSQVVHFKVVIRVL 134
            +LAGNN  EI+ VK+FL   F+IKDLGNLR+F+G+E+ RS KGIL+NQRKYTLELL++SG LA KPS TPYDPSLKL+  +SP Y D + Y+RLIGRLLYLTTTRPDI+F VQQLSQ VS  + VHF+   +VL
Sbjct: 1111 VLAGNNSLEITSVKSFLDKRFQIKDLGNLRFFVGLEIARSKKGILLNQRKYTLELLQDSGNLAAKPSSTPYDPSLKLHDSESPPYNDPSGYRRLIGRLLYLTTTRPDITFAVQQLSQFVSSPREVHFQAATKVL 1244          
BLAST of Vfaba.Hedin2.R1.5g181040.1 vs. UniProtKB/TrEMBL
Match: tr|A0A151TFA8|A0A151TFA8_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) OS=Cajanus cajan OX=3821 GN=KK1_011996 PE=4 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 3.546e-52
Identity = 90/134 (67.16%), Postives = 108/134 (80.60%), Query Frame = 0
Query:    1 MLAGNNFAEISFVKAFLHDSFKIKDLGNLRYFLGIEVVRSSKGILINQRKYTLELLEESGQLATKPSKTPYDPSLKLNCPDSPIYKDETQYKRLIGRLLYLTTTRPDISFVVQQLSQHVSKSQVVHFKVVIRVL 134
            +LAGN+  EI F+KA LH  FKIKDLGNLRYFLG+E+ RS+KGIL+NQRKYTLE+LE+ G LA KPS TP++PSLKL+      Y DET Y+RLIGRLLYLTTTRPDIS+VVQQLSQ VSK   +H++   R+L
Sbjct:  695 ILAGNDKPEIDFIKAQLHKCFKIKDLGNLRYFLGLEIARSNKGILLNQRKYTLEILEDVGFLAAKPSSTPFNPSLKLHSDHGSPYNDETAYRRLIGRLLYLTTTRPDISYVVQQLSQFVSKPLDIHYQAATRIL 828          
BLAST of Vfaba.Hedin2.R1.5g181040.1 vs. UniProtKB/TrEMBL
Match: tr|A0A151QWB5|A0A151QWB5_CAJCA (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) OS=Cajanus cajan OX=3821 GN=KK1_044482 PE=4 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 6.662e-48
Identity = 77/134 (57.46%), Postives = 102/134 (76.12%), Query Frame = 0
Query:    1 MLAGNNFAEISFVKAFLHDSFKIKDLGNLRYFLGIEVVRSSKGILINQRKYTLELLEESGQLATKPSKTPYDPSLKLNCPDSPIYKDETQYKRLIGRLLYLTTTRPDISFVVQQLSQHVSKSQVVHFKVVIRVL 134
            +L+GNNF+EI  VK  LH  F+IKDLG L++FLG+EV RS KGI++NQRKY LEL++ESG L +KP+ TP DP++KL+     +  D T ++RLIGRLLYLT TRPDISF VQQLSQ VS+ +  H +  +R++
Sbjct:    9 VLSGNNFSEIQIVKQHLHQKFQIKDLGPLKFFLGLEVARSKKGIILNQRKYCLELIDESGLLGSKPAPTPADPAIKLHADHGSLLNDPTSFRRLIGRLLYLTNTRPDISFSVQQLSQFVSQPREPHLQAALRIV 142          
BLAST of Vfaba.Hedin2.R1.5g181040.1 vs. UniProtKB/TrEMBL
Match: tr|A0A2K3JQF8|A0A2K3JQF8_TRIPR (Putative copia-type protein (Fragment) OS=Trifolium pratense OX=57577 GN=L195_g058127 PE=4 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 2.998e-46
Identity = 74/134 (55.22%), Postives = 98/134 (73.13%), Query Frame = 0
Query:    1 MLAGNNFAEISFVKAFLHDSFKIKDLGNLRYFLGIEVVRSSKGILINQRKYTLELLEESGQLATKPSKTPYDPSLKLNCPDSPIYKDETQYKRLIGRLLYLTTTRPDISFVVQQLSQHVSKSQVVHFKVVIRVL 134
            +LAG++  E + +K  L D FKIKDLG L+YFLGIEV  S++GI + QRKY L+LL+++G L  KP+KTP DPS+KL+   SP Y D   Y+RL+G+LLYLTTTRPDI+FV QQLSQ ++    VH+    RV+
Sbjct:   30 ILAGDSLDEFTHIKQLLDDLFKIKDLGQLKYFLGIEVAHSNQGITLCQRKYCLDLLQDTGLLGAKPAKTPLDPSVKLHQDTSPPYADIASYRRLVGKLLYLTTTRPDIAFVTQQLSQFLTSPTQVHYDTACRVI 163          
BLAST of Vfaba.Hedin2.R1.5g181040.1 vs. UniProtKB/TrEMBL
Match: tr|A0A2K3L8G7|A0A2K3L8G7_TRIPR (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Trifolium pratense OX=57577 GN=L195_g030756 PE=4 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 3.585e-46
Identity = 82/134 (61.19%), Postives = 99/134 (73.88%), Query Frame = 0
Query:    1 MLAGNNFAEISFVKAFLHDSFKIKDLGNLRYFLGIEVVRSSKGILINQRKYTLELLEESGQLATKPSKTPYDPSLKLNCPDSPIYKDETQYKRLIGRLLYLTTTRPDISFVVQQLSQHVSKSQVVHFKVVIRVL 134
            +LAGN+  EI  VK FL   FKIKDLG LRYFLG E+ RS KGI +NQRKY LELL+++G LATKPSK P++P+ KL+  D  + +D + Y+RLIGRLLYLT TRPDISF VQ LSQ VSK  V H+    R+L
Sbjct:  300 ILAGNSSQEIQDVKHFLDQKFKIKDLGKLRYFLGFEIARSPKGIFVNQRKYALELLQDTGFLATKPSKIPFNPTTKLSSTDGALLEDPSSYRRLIGRLLYLTNTRPDISFSVQHLSQFVSKPLVPHYTAATRIL 433          
BLAST of Vfaba.Hedin2.R1.5g181040.1 vs. UniProtKB/TrEMBL
Match: tr|A0A2K3L6W5|A0A2K3L6W5_TRIPR (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Trifolium pratense OX=57577 GN=L195_g030193 PE=4 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 1.848e-45
Identity = 82/134 (61.19%), Postives = 98/134 (73.13%), Query Frame = 0
Query:    1 MLAGNNFAEISFVKAFLHDSFKIKDLGNLRYFLGIEVVRSSKGILINQRKYTLELLEESGQLATKPSKTPYDPSLKLNCPDSPIYKDETQYKRLIGRLLYLTTTRPDISFVVQQLSQHVSKSQVVHFKVVIRVL 134
            +LAGN+  EI  VK FL   FKIKDLG LRYFLG E+ RS KGI +NQRKYTLELL+++G LATKPS  P++P+ KL+  D    KD + Y+RLIGRLLYLT TRPDISF VQ LSQ VSK  + H+    R+L
Sbjct:  450 VLAGNSSKEIQAVKHFLDQKFKIKDLGKLRYFLGFEIARSPKGIFVNQRKYTLELLQDTGFLATKPSNIPFNPTTKLSSTDGAPLKDPSSYRRLIGRLLYLTNTRPDISFSVQHLSQFVSKPLIPHYTAATRIL 583          
BLAST of Vfaba.Hedin2.R1.5g181040.1 vs. UniProtKB/TrEMBL
Match: tr|A0A3Q7YDX6|A0A3Q7YDX6_CICAR (uncharacterized protein LOC113785815 OS=Cicer arietinum OX=3827 GN=LOC113785815 PE=4 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.881e-45
Identity = 76/112 (67.86%), Postives = 87/112 (77.68%), Query Frame = 0
Query:   23 IKDLGNLRYFLGIEVVRSSKGILINQRKYTLELLEESGQLATKPSKTPYDPSLKLNCPDSPIYKDETQYKRLIGRLLYLTTTRPDISFVVQQLSQHVSKSQVVHFKVVIRVL 134
            IKDLG+LRYFLGIEV RS  GIL++ RKYTL+LL + G LATKP  TPYD SL LN  DSP+Y+DE+Q  RLIGRLLYLTTTR DI+F VQQLSQHVS  + VHFK    + 
Sbjct:    7 IKDLGSLRYFLGIEVARSPSGILLDHRKYTLKLLNDIGILATKPPSTPYDSSLNLNYSDSPLYEDESQLMRLIGRLLYLTTTRLDIAFTVQQLSQHVSSPRQVHFKAAASIF 118          
BLAST of Vfaba.Hedin2.R1.5g181040.1 vs. UniProtKB/TrEMBL
Match: tr|A0A392NRH6|A0A392NRH6_9FABA (LTR retrotransposon-like protein (Fragment) OS=Trifolium medium OX=97028 PE=4 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 5.441e-45
Identity = 73/126 (57.94%), Postives = 93/126 (73.81%), Query Frame = 0
Query:    9 EISFVKAFLHDSFKIKDLGNLRYFLGIEVVRSSKGILINQRKYTLELLEESGQLATKPSKTPYDPSLKLNCPDSPIYKDETQYKRLIGRLLYLTTTRPDISFVVQQLSQHVSKSQVVHFKVVIRVL 134
            EI  VK FL   F+IKDLG+LR+FLG+E+ RSS GI +NQRKY LELLE++G L +KP+  P+DP +KL+  D   + D + Y+RLIGRLLYLT TRPDISF VQ LSQ+VS   V H++   R+L
Sbjct:    5 EIKSVKLFLDQQFRIKDLGHLRFFLGLEIARSSSGIFLNQRKYALELLEDTGFLGSKPAAVPFDPHIKLSATDGIPFDDPSAYRRLIGRLLYLTHTRPDISFSVQHLSQYVSNPLVPHYQAATRIL 130          
BLAST of Vfaba.Hedin2.R1.5g181040.1 vs. UniProtKB/TrEMBL
Match: tr|A0A151RAD3|A0A151RAD3_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan OX=3821 GN=KK1_039187 PE=4 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 1.096e-44
Identity = 77/134 (57.46%), Postives = 102/134 (76.12%), Query Frame = 0
Query:    1 MLAGNNFAEISFVKAFLHDSFKIKDLGNLRYFLGIEVVRSSKGILINQRKYTLELLEESGQLATKPSKTPYDPSLKLNCPDSPIYKDETQYKRLIGRLLYLTTTRPDISFVVQQLSQHVSKSQVVHFKVVIRVL 134
            +L+GNNF+EI  VK  LH  F+IKDLG L++FLG+EV RS KGI++NQRKY LEL++ESG L +KP+ TP DP++KL+     +  D T ++RLIGRLLYLT TRPDISF VQQLSQ VS+ +  H +  +R++
Sbjct: 1133 VLSGNNFSEIQIVKQHLHQKFQIKDLGPLKFFLGLEVARSKKGIILNQRKYCLELIDESGLLGSKPAPTPADPAIKLHADHGSLLNDPTSFRRLIGRLLYLTNTRPDISFSVQQLSQFVSQPREPHLQAALRIV 1266          
BLAST of Vfaba.Hedin2.R1.5g181040.1 vs. UniProtKB/Swiss-Prot
Match: sp|Q9ZT94|POLR2_ARATH (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.491e-21
Identity = 49/134 (36.57%), Postives = 74/134 (55.22%), Query Frame = 0
Query:    1 MLAGNNFAEISFVKAFLHDSFKIKDLGNLRYFLGIEVVRSSKGILINQRKYTLELLEESGQLATKPSKTPYDPSLKLNCPDSPIYKDETQYKRLIGRLLYLTTTRPDISFVVQQLSQHVSKSQVVHFKVVIRVL 134
            ++ GN+   +      L   F +K+  +L YFLGIE  R  +G+ ++QR+YTL+LL  +  L  KP  TP   S KL         D T+Y+ ++G L YL  TRPD+S+ V +LSQ++      H+  + RVL
Sbjct: 1138 LITGNDTVLLKHTLDALSQRFSVKEHEDLHYFLGIEAKRVPQGLHLSQRRYTLDLLARTNMLTAKPVATPMATSPKLTLHSGTKLPDPTEYRGIVGSLQYLAFTRPDLSYAVNRLSQYMHMPTDDHWNALKRVL 1271          
BLAST of Vfaba.Hedin2.R1.5g181040.1 vs. UniProtKB/Swiss-Prot
Match: sp|Q94HW2|POLR1_ARATH (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 6.965e-21
Identity = 49/134 (36.57%), Postives = 72/134 (53.73%), Query Frame = 0
Query:    1 MLAGNNFAEISFVKAFLHDSFKIKDLGNLRYFLGIEVVRSSKGILINQRKYTLELLEESGQLATKPSKTPYDPSLKLNCPDSPIYKDETQYKRLIGRLLYLTTTRPDISFVVQQLSQHVSKSQVVHFKVVIRVL 134
            ++ GN+   +      L   F +KD   L YFLGIE  R   G+ ++QR+Y L+LL  +  +  KP  TP  PS KL+        D T+Y+ ++G L YL  TRPDIS+ V +LSQ +      H + + R+L
Sbjct: 1155 LITGNDPTLLHNTLDNLSQRFSVKDHEELHYFLGIEAKRVPTGLHLSQRRYILDLLARTNMITAKPVTTPMAPSPKLSLYSGTKLTDPTEYRGIVGSLQYLAFTRPDISYAVNRLSQFMHMPTEEHLQALKRIL 1288          
BLAST of Vfaba.Hedin2.R1.5g181040.1 vs. UniProtKB/Swiss-Prot
Match: sp|P92519|M810_ARATH (Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 GN=AtMg00810 PE=4 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.962e-20
Identity = 48/135 (35.56%), Postives = 77/135 (57.04%), Query Frame = 0
Query:    1 MLAGNNFAEISFVKAFLHDSFKIKDLGNLRYFLGIEVVRSSKGILINQRKYTLELLEESGQLATKPSKTPYDPSLKLNCPDSPI-YKDETQYKRLIGRLLYLTTTRPDISFVVQQLSQHVSKSQVVHFKVVIRVL 134
            +L G++   ++ +   L  +F +KDLG + YFLGI++     G+ ++Q KY  ++L  +G L  KP  TP    LKLN   S   Y D + ++ ++G L YLT TRPDIS+ V  + Q + +  +  F ++ RVL
Sbjct:   11 LLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTKYAEQILNNAGMLDCKPMSTPL--PLKLNSSVSTAKYPDPSDFRSIVGALQYLTLTRPDISYAVNIVCQRMHEPTLADFDLLKRVL 143          
BLAST of Vfaba.Hedin2.R1.5g181040.1 vs. UniProtKB/Swiss-Prot
Match: sp|P25600|YCH4_YEAST (Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY5A PE=5 SV=2)

HSP 1 Score: 62.003 bits (149), Expect = 4.510e-11
Identity = 44/124 (35.48%), Postives = 68/124 (54.84%), Query Frame = 0
Query:   13 VKAFLHDSFKIKDLGNLRYFLGIEVVRSSKG-ILINQRKYTLELLEESGQLATKPSKTPYDPSLKLNCPDSPIYKDETQYKRLIGRLLYLTTT-RPDISFVVQQLSQHVSKSQVVHFKVVIRVL 134
            VK  L   + +KDLG +  FLG+ + +SS G I ++ + Y  +   ES     K ++TP   S  L    SP  KD T Y+ ++G+LL+   T RPDIS+ V  LS+ + + + +H +   RVL
Sbjct:  104 VKQELTKLYSMKDLGKVDKFLGLNIHQSSNGDITLSLQDYIAKAASESEINTFKLTQTPLCNSKPLFETTSPHLKDITPYQSIVGQLLFCANTGRPDISYPVSLLSRFLREPRAIHLESARRVL 227          
BLAST of Vfaba.Hedin2.R1.5g181040.1 vs. UniProtKB/Swiss-Prot
Match: sp|P10978|POLX_TOBAC (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 62.003 bits (149), Expect = 5.351e-11
Identity = 44/143 (30.77%), Postives = 72/143 (50.35%), Query Frame = 0
Query:    1 MLAGNNFAEISFVKAFLHDSFKIKDLGNLRYFLGIEVV--RSSKGILINQRKYTLELLEESGQLATKPSKTPYDPSLKLN---CPDSPIYKDETQ---YKRLIGRLLY-LTTTRPDISFVVQQLSQHVSKSQVVHFKVVIRVL 134
            ++ G +   I+ +K  L  SF +KDLG  +  LG+++V  R+S+ + ++Q KY   +LE       KP  TP    LKL+   CP +   K       Y   +G L+Y +  TRPDI+  V  +S+ +      H++ V  +L
Sbjct: 1013 LIVGKDKGLIAKLKGDLSKSFDMKDLGPAQQILGMKIVRERTSRKLWLSQEKYIERVLERFNMKNAKPVSTPLAGHLKLSKKMCPTTVEEKGNMAKVPYSSAVGSLMYAMVCTRPDIAHAVGVVSRFLENPGKEHWEAVKWIL 1155          
BLAST of Vfaba.Hedin2.R1.5g181040.1 vs. Araport11
Match: AT4G23160.3 (| cysteine-rich RECEPTOR-like kinase | Chr4:12129485-12133157 FORWARD LENGTH=1043 | 201606)

HSP 1 Score: 126.716 bits (317), Expect = 1.683e-34
Identity = 61/134 (45.52%), Postives = 87/134 (64.93%), Query Frame = 0
Query:    1 MLAGNNFAEISFVKAFLHDSFKIKDLGNLRYFLGIEVVRSSKGILINQRKYTLELLEESGQLATKPSKTPYDPSLKLNCPDSPIYKDETQYKRLIGRLLYLTTTRPDISFVVQQLSQHVSKSQVVHFKVVIRVL 134
            ++  NN A +  +K+ L   FK++DLG L+YFLG+E+ RS+ GI I QRKY L+LL+E+G L  KPS  P DPS+  +      + D   Y+RLIGRL+YL  TR DISF V +LSQ     ++ H + V+++L
Sbjct:  288 IICSNNDAAVDELKSQLKSCFKLRDLGPLKYFLGLEIARSAAGINICQRKYALDLLDETGLLGCKPSSVPMDPSVTFSAHSGGDFVDAKAYRRLIGRLMYLQITRLDISFAVNKLSQFSEAPRLAHQQAVMKIL 421          
BLAST of Vfaba.Hedin2.R1.5g181040.1 vs. Araport11
Match: AT4G23160.2 (| cysteine-rich RECEPTOR-like kinase | Chr4:12129485-12133157 FORWARD LENGTH=1043 | 201606)

HSP 1 Score: 126.716 bits (317), Expect = 1.683e-34
Identity = 61/134 (45.52%), Postives = 87/134 (64.93%), Query Frame = 0
Query:    1 MLAGNNFAEISFVKAFLHDSFKIKDLGNLRYFLGIEVVRSSKGILINQRKYTLELLEESGQLATKPSKTPYDPSLKLNCPDSPIYKDETQYKRLIGRLLYLTTTRPDISFVVQQLSQHVSKSQVVHFKVVIRVL 134
            ++  NN A +  +K+ L   FK++DLG L+YFLG+E+ RS+ GI I QRKY L+LL+E+G L  KPS  P DPS+  +      + D   Y+RLIGRL+YL  TR DISF V +LSQ     ++ H + V+++L
Sbjct:  288 IICSNNDAAVDELKSQLKSCFKLRDLGPLKYFLGLEIARSAAGINICQRKYALDLLDETGLLGCKPSSVPMDPSVTFSAHSGGDFVDAKAYRRLIGRLMYLQITRLDISFAVNKLSQFSEAPRLAHQQAVMKIL 421          
BLAST of Vfaba.Hedin2.R1.5g181040.1 vs. Araport11
Match: ATMG00810.1 (| DNA/RNA polymerases superfamily protein | ChrM:227709-228431 REVERSE LENGTH=240 | 201606)

HSP 1 Score: 85.8853 bits (211), Expect = 3.030e-21
Identity = 48/135 (35.56%), Postives = 77/135 (57.04%), Query Frame = 0
Query:    1 MLAGNNFAEISFVKAFLHDSFKIKDLGNLRYFLGIEVVRSSKGILINQRKYTLELLEESGQLATKPSKTPYDPSLKLNCPDSPI-YKDETQYKRLIGRLLYLTTTRPDISFVVQQLSQHVSKSQVVHFKVVIRVL 134
            +L G++   ++ +   L  +F +KDLG + YFLGI++     G+ ++Q KY  ++L  +G L  KP  TP    LKLN   S   Y D + ++ ++G L YLT TRPDIS+ V  + Q + +  +  F ++ RVL
Sbjct:   11 LLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTKYAEQILNNAGMLDCKPMSTPL--PLKLNSSVSTAKYPDPSDFRSIVGALQYLTLTRPDISYAVNIVCQRMHEPTLADFDLLKRVL 143          
The following BLAST results are available for this feature:
BLAST of Vfaba.Hedin2.R1.5g181040.1 vs. UniProtKB/TrEMBL
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs UniProt TrEMBL)
Total hits: 10
Match NameE-valueIdentityDescription
tr|A0A2K3KR12|A0A2K3KR12_TRIPR5.089e-5764.93Putative copia-type protein (Fragment) OS=Trifoliu... [more]
tr|A0A2K3MSB5|A0A2K3MSB5_TRIPR2.093e-5267.16Retrovirus-related Pol polyprotein from transposon... [more]
tr|A0A151TFA8|A0A151TFA8_CAJCA3.546e-5267.16Retrovirus-related Pol polyprotein from transposon... [more]
tr|A0A151QWB5|A0A151QWB5_CAJCA6.662e-4857.46Reverse transcriptase Ty1/copia-type domain-contai... [more]
tr|A0A2K3JQF8|A0A2K3JQF8_TRIPR2.998e-4655.22Putative copia-type protein (Fragment) OS=Trifoliu... [more]
tr|A0A2K3L8G7|A0A2K3L8G7_TRIPR3.585e-4661.19Retrovirus-related Pol polyprotein from transposon... [more]
tr|A0A2K3L6W5|A0A2K3L6W5_TRIPR1.848e-4561.19Retrovirus-related Pol polyprotein from transposon... [more]
tr|A0A3Q7YDX6|A0A3Q7YDX6_CICAR1.881e-4567.86uncharacterized protein LOC113785815 OS=Cicer arie... [more]
tr|A0A392NRH6|A0A392NRH6_9FABA5.441e-4557.94LTR retrotransposon-like protein (Fragment) OS=Tri... [more]
tr|A0A151RAD3|A0A151RAD3_CAJCA1.096e-4457.46Retrovirus-related Pol polyprotein from transposon... [more]
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BLAST of Vfaba.Hedin2.R1.5g181040.1 vs. UniProtKB/Swiss-Prot
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs UniProt Swissprot)
Total hits: 5
Match NameE-valueIdentityDescription
sp|Q9ZT94|POLR2_ARATH1.491e-2136.57Retrovirus-related Pol polyprotein from transposon... [more]
sp|Q94HW2|POLR1_ARATH6.965e-2136.57Retrovirus-related Pol polyprotein from transposon... [more]
sp|P92519|M810_ARATH2.962e-2035.56Uncharacterized mitochondrial protein AtMg00810 OS... [more]
sp|P25600|YCH4_YEAST4.510e-1135.48Putative transposon Ty5-1 protein YCL074W OS=Sacch... [more]
sp|P10978|POLX_TOBAC5.351e-1130.77Retrovirus-related Pol polyprotein from transposon... [more]
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BLAST of Vfaba.Hedin2.R1.5g181040.1 vs. Araport11
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs arabidopsis Araport11)
Total hits: 3
Match NameE-valueIdentityDescription
AT4G23160.31.683e-3445.52| cysteine-rich RECEPTOR-like kinase | Chr4:121294... [more]
AT4G23160.21.683e-3445.52| cysteine-rich RECEPTOR-like kinase | Chr4:121294... [more]
ATMG00810.13.030e-2135.56| DNA/RNA polymerases superfamily protein | ChrM:2... [more]
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InterPro
Analysis Name: InterProScan Analysis for Vicia faba inbred line Hedin/2 v1.0 proteins
Date Performed: 2023-05-12
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 2..70
e-value: 8.5E-9
score: 35.4
NoneNo IPR availablePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 29..134
IPR043502DNA/RNA polymerase superfamilySUPERFAMILY56672DNA/RNA polymerasescoord: 11..126

Sequences
The following sequences are available for this feature:

mRNA sequence

>Vfaba.Hedin2.R1.5g181040.1_vfh_v1 ID=Vfaba.Hedin2.R1.5g181040.1_vfh_v1; Name=Vfaba.Hedin2.R1.5g181040.1; organism=Vicia faba; type=mRNA; length=405bp
ATGTTGGCTGGAAATAATTTTGCTGAAATTTCCTTTGTTAAAGCTTTTCT
CCATGACTCCTTCAAAATCAAAGATTTAGGGAACCTTAGATACTTTCTTG
GCATTGAAGTTGTTAGATCTTCCAAAGGCATTTTAATTAATCAACGAAAA
TACACCTTGGAGCTTTTGGAAGAATCTGGCCAGCTTGCCACTAAGCCATC
TAAAACCCCCTATGATCCTTCCCTTAAGCTCAATTGTCCCGATTCTCCTA
TTTATAAGGATGAAACCCAATACAAAAGGCTTATTGGCAGGCTCCTTTAT
TTAACCACTACTAGACCGGACATCTCCTTTGTCGTCCAACAACTTAGCCA
ACATGTTTCCAAATCTCAAGTTGTTCACTTCAAAGTTGTTATCCGTGTTC
TATAA
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protein sequence of Vfaba.Hedin2.R1.5g181040.1_vfh_v1

>Vfaba.Hedin2.R1.5g181040.1_vfh_v1 ID=Vfaba.Hedin2.R1.5g181040.1_vfh_v1; Name=Vfaba.Hedin2.R1.5g181040.1_vfh_v1; organism=Vicia faba; type=polypeptide; length=134bp
MLAGNNFAEISFVKAFLHDSFKIKDLGNLRYFLGIEVVRSSKGILINQRK
YTLELLEESGQLATKPSKTPYDPSLKLNCPDSPIYKDETQYKRLIGRLLY
LTTTRPDISFVVQQLSQHVSKSQVVHFKVVIRVL
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mRNA from alignment at chr5:1252965455..1252965859-

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>Vfaba.Hedin2.R1.5g181040.1_vfh_v1 ID=Vfaba.Hedin2.R1.5g181040.1_vfh_v1; Name=Vfaba.Hedin2.R1.5g181040.1; organism=Vicia faba; type=mRNA; location=Sequence derived from: chr5:1252965455..1252965859- (Vicia faba
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2
IPR043502DNA/RNA_pol_sf