rna-XM_014638027.2
Transcript Overview
References
External references for this mRNA
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of rna-XM_014638027.2 vs. Araport11
Match: AT1G27300.1 (| transmembrane protein | Chr1:9483324-9484194 FORWARD LENGTH=200 | 201606) HSP 1 Score: 89.7373 bits (221), Expect = 3.279e-22 Identity = 64/158 (40.51%), Postives = 93/158 (58.86%), Query Frame = 0 Query: 10 MEQDRRLQLIDNAIQKLIQDDHDKNNNKVRESHHNDDDRYQNALSHLLSVSQSNVLKGEE--IPEEFEDSRSSESVIEETEGEDEGGGERRGSEN-DEIMKELKKVKRQNFVTHCLLSVMIVLTVVWQVSEVSLILQLKDGLSHPFRSFGNMLKGMVK 164 ME ++ + AI+KL+ H+K + +D Q LS L+S +S KG+E I E E+ + ++G+ EG +R+ E+ +EI K++KKVK+QN +TH LLS I+LT+VWQ+SE S+I LKD +SHP RS G ML GM K Sbjct: 1 MESSEDVENLSRAIEKLL---HEKRKREASGDAFIEDADDQLFLSSLISQLESPNPKGKEDVITGEEEEKEEESADSSPSKGKSEG--QRQLEESIEEIAKDIKKVKKQNKITHVLLSATIILTLVWQLSEYSMIFMLKDRISHPVRSIGGMLNGMFK 153
BLAST of rna-XM_014638027.2 vs. UniProtKB/TrEMBL
Match: tr|A0A1S3TIB0|A0A1S3TIB0_VIGRR (uncharacterized protein LOC106755814 OS=Vigna radiata var. radiata OX=3916 GN=LOC106755814 PE=4 SV=1) HSP 1 Score: 400.979 bits (1029), Expect = 3.277e-141 Identity = 198/198 (100.00%), Postives = 198/198 (100.00%), Query Frame = 0 Query: 1 MIDHLSPVTMEQDRRLQLIDNAIQKLIQDDHDKNNNKVRESHHNDDDRYQNALSHLLSVSQSNVLKGEEIPEEFEDSRSSESVIEETEGEDEGGGERRGSENDEIMKELKKVKRQNFVTHCLLSVMIVLTVVWQVSEVSLILQLKDGLSHPFRSFGNMLKGMVKVPQVKGQNADDNEELLESSSLPSMIIPDMSHTGN 198 MIDHLSPVTMEQDRRLQLIDNAIQKLIQDDHDKNNNKVRESHHNDDDRYQNALSHLLSVSQSNVLKGEEIPEEFEDSRSSESVIEETEGEDEGGGERRGSENDEIMKELKKVKRQNFVTHCLLSVMIVLTVVWQVSEVSLILQLKDGLSHPFRSFGNMLKGMVKVPQVKGQNADDNEELLESSSLPSMIIPDMSHTGN Sbjct: 1 MIDHLSPVTMEQDRRLQLIDNAIQKLIQDDHDKNNNKVRESHHNDDDRYQNALSHLLSVSQSNVLKGEEIPEEFEDSRSSESVIEETEGEDEGGGERRGSENDEIMKELKKVKRQNFVTHCLLSVMIVLTVVWQVSEVSLILQLKDGLSHPFRSFGNMLKGMVKVPQVKGQNADDNEELLESSSLPSMIIPDMSHTGN 198
BLAST of rna-XM_014638027.2 vs. UniProtKB/TrEMBL
Match: tr|A0A0S3S1G6|A0A0S3S1G6_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.04G430300 PE=4 SV=1) HSP 1 Score: 332.798 bits (852), Expect = 3.773e-114 Identity = 169/197 (85.79%), Postives = 177/197 (89.85%), Query Frame = 0 Query: 3 DHLSPVTMEQDRRLQLIDNAIQKLIQDDHDKNN-NKVRESHHNDDDRYQNALSHLLSVSQSNVLKGEEIPEEFEDSRSSESVIEETEGEDEGGGERRGSENDEIMKELKKVKRQNFVTHCLLSVMIVLTVVWQVSEVSLILQLKDGLSHPFRSFGNMLKGMVKVPQVKGQNADDNEELLESSSLPSMIIPDMSHTGN 198 ++LSPVTMEQDRRLQLIDNAIQKLIQDDHDKNN NK+RESHHNDDDRYQNALSHLLSVSQ N+LKGEEI EEFEDSRSSE V TE +ENDEIMKELKKVKRQNFVTHCLLSVMIVLTVVWQVSEVSLILQLKDGLSHPFRSFGNMLKGMVKVP VKGQ+ADD+E+LLESSSLPSMIIPDMSH GN Sbjct: 9 NYLSPVTMEQDRRLQLIDNAIQKLIQDDHDKNNTNKIRESHHNDDDRYQNALSHLLSVSQWNILKGEEINEEFEDSRSSEPVAPVTEA----------TENDEIMKELKKVKRQNFVTHCLLSVMIVLTVVWQVSEVSLILQLKDGLSHPFRSFGNMLKGMVKVPHVKGQDADDDEQLLESSSLPSMIIPDMSHAGN 195
BLAST of rna-XM_014638027.2 vs. UniProtKB/TrEMBL
Match: tr|A0A0L9T4E3|A0A0L9T4E3_PHAAN (Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan102s010100 PE=4 SV=1) HSP 1 Score: 320.857 bits (821), Expect = 1.120e-109 Identity = 164/190 (86.32%), Postives = 170/190 (89.47%), Query Frame = 0 Query: 10 MEQDRRLQLIDNAIQKLIQDDHDKNN-NKVRESHHNDDDRYQNALSHLLSVSQSNVLKGEEIPEEFEDSRSSESVIEETEGEDEGGGERRGSENDEIMKELKKVKRQNFVTHCLLSVMIVLTVVWQVSEVSLILQLKDGLSHPFRSFGNMLKGMVKVPQVKGQNADDNEELLESSSLPSMIIPDMSHTGN 198 MEQDRRLQLIDNAIQKLIQDDHDKNN NK+RESHHNDDDRYQNALSHLLSVSQ N+LKGEEI EEFEDSRSSE V TE +ENDEIMKELKKVKRQNFVTHCLLSVMIVLTVVWQVSEVSLILQLKDGLSHPFRSFGNMLKGMVKVP VKGQ+ADD+E+LLESSSLPSMIIPDMSH GN Sbjct: 1 MEQDRRLQLIDNAIQKLIQDDHDKNNTNKIRESHHNDDDRYQNALSHLLSVSQWNILKGEEINEEFEDSRSSEPVAPVTEA----------TENDEIMKELKKVKRQNFVTHCLLSVMIVLTVVWQVSEVSLILQLKDGLSHPFRSFGNMLKGMVKVPHVKGQDADDDEQLLESSSLPSMIIPDMSHAGN 180
BLAST of rna-XM_014638027.2 vs. UniProtKB/TrEMBL
Match: tr|A0A0B2QRN4|A0A0B2QRN4_GLYSO (Uncharacterized protein OS=Glycine soja OX=3848 GN=glysoja_025228 PE=4 SV=1) HSP 1 Score: 273.478 bits (698), Expect = 6.237e-91 Identity = 139/192 (72.40%), Postives = 159/192 (82.81%), Query Frame = 0 Query: 10 MEQDRRLQLIDNAIQKLIQDDHDKNNNKVRESHHNDDDRYQNALSHLLSVSQSNVLKGEEIPEEFEDSRSSE---SVIEETEGEDEGGGERRGSENDEIMKELKKVKRQNFVTHCLLSVMIVLTVVWQVSEVSLILQLKDGLSHPFRSFGNMLKGMVKVPQVKGQNADDNEELLESSSLPSMIIPDMSHTGN 198 MEQDRR +LID AIQKL+ D N NKV+ES HN+D +YQ+ALSHLLSVSQ +LKGEEI E+FE S SSE S+ +ETE E+E GE +GSENDEI+KELKKVKRQNFVTHCLLSVMIVLTV WQ+SEVSLIL++KDG+SHPFRSFGNMLKGMVKVP + GQ ADD E ES S+PSMIIP+MSH GN Sbjct: 1 MEQDRRFELIDQAIQKLVHD----NTNKVQESLHNNDAQYQHALSHLLSVSQLKMLKGEEILEQFEASSSSEPVASITQETESENEDAGESKGSENDEIIKELKKVKRQNFVTHCLLSVMIVLTVAWQLSEVSLILKVKDGISHPFRSFGNMLKGMVKVPNMNGQEADDKEHPSESPSIPSMIIPNMSHNGN 188
BLAST of rna-XM_014638027.2 vs. UniProtKB/TrEMBL
Match: tr|C6SZ09|C6SZ09_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=100306350 PE=2 SV=1) HSP 1 Score: 269.626 bits (688), Expect = 2.217e-89 Identity = 137/192 (71.35%), Postives = 158/192 (82.29%), Query Frame = 0 Query: 10 MEQDRRLQLIDNAIQKLIQDDHDKNNNKVRESHHNDDDRYQNALSHLLSVSQSNVLKGEEIPEEFEDSRSSE---SVIEETEGEDEGGGERRGSENDEIMKELKKVKRQNFVTHCLLSVMIVLTVVWQVSEVSLILQLKDGLSHPFRSFGNMLKGMVKVPQVKGQNADDNEELLESSSLPSMIIPDMSHTGN 198 MEQDRR +LID AIQKL+ D N NKV+ES HN+D +YQ+ LSHLLSVSQ +LKGEEI E+FE S SSE S+ +ETE E+E GE +GSENDEI+KELKK+KRQNFVTHCLLSVMIVLTV WQ+SEVSLIL++KDG+SHPFRSFGNMLKGMVKVP + GQ ADD E ES S+PSMIIP+MSH GN Sbjct: 1 MEQDRRFELIDQAIQKLVHD----NTNKVQESLHNNDAQYQHPLSHLLSVSQLKMLKGEEILEQFEASSSSEPVASITQETESENEDAGESKGSENDEIIKELKKLKRQNFVTHCLLSVMIVLTVAWQLSEVSLILKVKDGISHPFRSFGNMLKGMVKVPNMNGQEADDKEHPSESPSIPSMIIPNMSHNGN 188
BLAST of rna-XM_014638027.2 vs. UniProtKB/TrEMBL
Match: tr|V7D257|V7D257_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_001G262900g PE=4 SV=1) HSP 1 Score: 268.47 bits (685), Expect = 8.003e-89 Identity = 154/193 (79.79%), Postives = 164/193 (84.97%), Query Frame = 0 Query: 10 MEQDRRLQLIDNAIQKLIQDDHDKN-NNKVRESHHNDDDRYQNALSHLLSVSQSNVLKGEEIPEEFEDSRSS---ESVIEETEGEDEGGGERRGSENDEIMKELKKVKRQNFVTHCLLSVMIVLTVVWQVSEVSLILQLKDGLSHPFRSFGNMLKGMVKVPQVKGQNADDNEELLESSSLPSMIIPDMSHTGN 198 MEQDRRL+LID+AIQK+I HD N NK ESHHN+D +YQNALSHLLSVSQ NVL GEEIPE+FE SR S S IE TEGEDE GGERRGSENDEIMKELKKVKRQNFVTHCLLS MIVLTV WQ+SEVSLILQLKDGLSHPFRSFGNMLKGMVKVP +K ADDNE+L ES SLPSM+IPDMSH GN Sbjct: 1 MEQDRRLELIDDAIQKVI---HDNNITNKAPESHHNNDVQYQNALSHLLSVSQFNVLNGEEIPEQFEGSRFSGPVASAIEVTEGEDEEGGERRGSENDEIMKELKKVKRQNFVTHCLLSAMIVLTVTWQLSEVSLILQLKDGLSHPFRSFGNMLKGMVKVPDMKPHEADDNEQLPESLSLPSMMIPDMSHIGN 190
BLAST of rna-XM_014638027.2 vs. UniProtKB/TrEMBL
Match: tr|A0A4D6NLM7|A0A4D6NLM7_VIGUN (Uncharacterized protein OS=Vigna unguiculata OX=3917 GN=DEO72_LG11g78 PE=4 SV=1) HSP 1 Score: 263.462 bits (672), Expect = 6.045e-87 Identity = 145/187 (77.54%), Postives = 160/187 (85.56%), Query Frame = 0 Query: 10 MEQDRRLQLIDNAIQKLIQDDHDKNNNKVRESHHNDDDRYQNALSHLLSVSQSNVLKGEEIPEEFEDSRSSESVIEETEGEDEGGGERRGSENDEIMKELKKVKRQNFVTHCLLSVMIVLTVVWQVSEVSLILQLKDGLSHPFRSFGNMLKGMVKVPQVKGQNADDN-EELLESSSLPSMIIPDMSH 195 MEQDRRLQLIDNAIQKLI D + N NKV+ESHHN+D +YQNALSHLLSVSQSN+LKGEEIPE++E RSS++V E ++ SENDEIMKELKKVK+QNFVTHCLLSVMIVLTVVWQVSEVSLILQLKDGLSHPFRSFGN+LKGMVKVP VKGQ+ADD E L SSSLPSM+IPDMSH Sbjct: 1 MEQDRRLQLIDNAIQKLIHDT-NTNTNKVQESHHNNDAQYQNALSHLLSVSQSNILKGEEIPEQYEGCRSSDTVGSVIEAKEGEDEGGG-SENDEIMKELKKVKKQNFVTHCLLSVMIVLTVVWQVSEVSLILQLKDGLSHPFRSFGNILKGMVKVPDVKGQDADDREELLESSSSLPSMVIPDMSH 185
BLAST of rna-XM_014638027.2 vs. UniProtKB/TrEMBL
Match: tr|A0A151U8P7|A0A151U8P7_CAJCA (Uncharacterized protein OS=Cajanus cajan OX=3821 GN=KK1_019860 PE=4 SV=1) HSP 1 Score: 248.44 bits (633), Expect = 7.252e-81 Identity = 135/200 (67.50%), Postives = 157/200 (78.50%), Query Frame = 0 Query: 10 MEQDRRLQLIDNAIQKLIQDDHDKNNNKVRES--HHNDDDRYQNALSHLLSVSQSNVLKGEEIPEEFEDSR-------SSE---SVIEETEGEDEGGGERRGSENDEIMKELKKVKRQNFVTHCLLSVMIVLTVVWQVSEVSLILQLKDGLSHPFRSFGNMLKGMVKVPQVKGQNADDNEELLESSSLPSMIIPDMSHTG 197 ME+DRRL+L+D AIQKLI D N NKV ES H+ D +YQNAL+ LLSVSQ VLKG+EI E++ED+ SSE SVI++TEGE+E + GSENDEI+KELK+VKRQNF+THCLLSVMIVLTV WQ+SEVSLIL++KDGLSHPFRSFGNML+GMVKVP V GQ ADD E ESSSLPS+ IPDMSH G Sbjct: 1 MEKDRRLELVDQAIQKLIHD----NTNKVHESLHSHDTDTQYQNALAQLLSVSQLKVLKGDEIVEQYEDAEDETSVPSSSEPVASVIQKTEGENE---DAEGSENDEIVKELKEVKRQNFITHCLLSVMIVLTVTWQLSEVSLILRVKDGLSHPFRSFGNMLRGMVKVPNVNGQEADDKENSTESSSLPSLGIPDMSHNG 193
BLAST of rna-XM_014638027.2 vs. UniProtKB/TrEMBL
Match: tr|A0A371IA08|A0A371IA08_MUCPR (Uncharacterized protein (Fragment) OS=Mucuna pruriens OX=157652 GN=CR513_03414 PE=4 SV=1) HSP 1 Score: 238.424 bits (607), Expect = 4.317e-77 Identity = 131/193 (67.88%), Postives = 151/193 (78.24%), Query Frame = 0 Query: 10 MEQDRRLQLIDNAIQKLIQDDHDKNNNKVRESHHNDDDRYQNALSHLLSVSQSNVLKGEEIPEEFEDSRSS---ESVIEETEGEDEGGGERRGSENDEIMKELKKVKRQNFVTHCLLSVMIVLTVVWQVSEVSLILQLKDGLSHPFRSFGNMLKGMVKVPQV-KGQNADDNEELLESSSLPSMIIPDMSHTGN 198 MEQDRRL+LID+AIQKLI HD NN V++SHH+ + +YQ+ LSHLLSVSQ +LKG+EI E+ E S SS SVIEE+E E+E G GSENDEI+KELKKVKRQNFVTHCLLSVMIVLTV WQ+SEVSLI ++KDGLSHPFRSFGNMLKGMVKVP + GQ DD + E PS+ IPDMSH GN Sbjct: 1 MEQDRRLELIDHAIQKLI---HDNTNNNVQDSHHSYEAQYQHTLSHLLSVSQLKMLKGDEIVEQQEASSSSWPMASVIEESESENEDAG---GSENDEIIKELKKVKRQNFVTHCLLSVMIVLTVAWQLSEVSLIFKVKDGLSHPFRSFGNMLKGMVKVPDLNNGQKGDDKQHPPE---FPSLNIPDMSHNGN 184
BLAST of rna-XM_014638027.2 vs. UniProtKB/TrEMBL
Match: tr|A0A445FMD7|A0A445FMD7_GLYSO (Uncharacterized protein OS=Glycine soja OX=3848 GN=D0Y65_047120 PE=4 SV=1) HSP 1 Score: 205.682 bits (522), Expect = 7.934e-65 Identity = 102/138 (73.91%), Postives = 117/138 (84.78%), Query Frame = 0 Query: 64 VLKGEEIPEEFEDSRSSE---SVIEETEGEDEGGGERRGSENDEIMKELKKVKRQNFVTHCLLSVMIVLTVVWQVSEVSLILQLKDGLSHPFRSFGNMLKGMVKVPQVKGQNADDNEELLESSSLPSMIIPDMSHTGN 198 +LKGEEI E+FE S SSE S+ +ETE E+E GE +GSENDEI+KELKK+KRQNFVTHCLLSVMIVLTV WQ+SEVSLIL++KDG+SHPFRSFGNMLKGMVKVP + GQ ADD E ES S+PSMIIP+MSH GN Sbjct: 1 MLKGEEILEQFEASSSSEPVASITQETESENEDAGESKGSENDEIIKELKKLKRQNFVTHCLLSVMIVLTVAWQLSEVSLILKVKDGISHPFRSFGNMLKGMVKVPNMNGQEADDKEHPSESPSIPSMIIPNMSHNGN 138 The following BLAST results are available for this feature:
BLAST of rna-XM_014638027.2 vs.
Analysis Date: 2023-06-20 (Blastp of Vigna radiata cv. VC1973A proteins vs UniProt Swissprot) Total hits: 0
BLAST of rna-XM_014638027.2 vs. Araport11
Analysis Date: 2023-06-20 (Blastp of Vigna radiata cv. VC1973A proteins vs arabidopsis Araport11) Total hits: 1
BLAST of rna-XM_014638027.2 vs. UniProtKB/TrEMBL
Analysis Date: 2023-06-20 (Blastp of Vigna radiata cv. VC1973A proteins vs UniProt TrEMBL) Total hits: 10
InterPro
Analysis Name: InterProScan Analysis for Vigna radiata cv. VC1973A genome v1.0
Date Performed: 2023-06-20
Sequences
The
following sequences are available for this feature:
mRNA sequence >rna-XM_014638027.2_VrVC1973A-SNU_v1 ID=rna-XM_014638027.2_VrVC1973A-SNU_v1; Name=rna-XM_014638027.2; organism=Vigna radiata; type=mRNA; length=597bpback to top protein sequence of rna-XM_014638027.2_VrVC1973A-SNU_v1 >rna-XM_014638027.2_VrVC1973A-SNU_v1 ID=rna-XM_014638027.2_VrVC1973A-SNU_v1; Name=rna-XM_014638027.2_VrVC1973A-SNU_v1; organism=Vigna radiata; type=polypeptide; length=198bpback to top mRNA from alignment at chr02:22116526..22117900+ Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>rna-XM_014638027.2_VrVC1973A-SNU_v1 ID=rna-XM_014638027.2_VrVC1973A-SNU_v1; Name=rna-XM_014638027.2; organism=Vigna radiata; type=mRNA; length=1375bp; location=Sequence derived from: chr02:22116526..22117900+ (Vigna radiataback to top Coding sequence (CDS) from alignment at chr02:22116526..22117900+ >rna-XM_014638027.2_VrVC1973A-SNU_v1 ID=rna-XM_014638027.2_VrVC1973A-SNU_v1; Name=rna-XM_014638027.2; organism=Vigna radiata; type=CDS; length=597bp; location=Sequence derived from: chr02:22116526..22117900+ (Vigna radiataback to top |