rna-XM_022782502.1

Transcript Overview
Namerna-XM_022782502.1
Unique Namerna-XM_022782502.1_VrVC1973A-SNU_v1
TypemRNA
OrganismVigna radiata (Mung bean, green gram)
Sequence length321
Productnuclear intron maturase 4, mitochondrial-like
References
External references for this mRNA
DatabaseAccession
GeneID111241893
GenbankXM_022782502.1
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
chr06chromosomechr06:33695297..33696658 -Vigna radiata cv. VC1973A genome v6.0n/a
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
gene-LOC111241893gene-LOC111241893_VrVC1973A-SNU_v1Vigna radiatagene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-XM_022782502.1-2exon-XM_022782502.1-2_VrVC1973A-SNU_v1Vigna radiataexon
exon-XM_022782502.1-1exon-XM_022782502.1-1_VrVC1973A-SNU_v1Vigna radiataexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
cds-XP_022638223.1cds-XP_022638223.1_VrVC1973A-SNU_v1_2Vigna radiataCDS
cds-XP_022638223.1cds-XP_022638223.1_VrVC1973A-SNU_v1Vigna radiataCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna-XM_022782502.1_VrVC1973A-SNU_v1rna-XM_022782502.1_VrVC1973A-SNU_v1Vigna radiatapolypeptide
rna-XM_022782502.1_VrVC1973A-SNU_v1rna-XM_022782502.1_VrVC1973A-SNU_v1-proteinVigna radiatapolypeptide


Homology
[Close]
BLAST of rna-XM_022782502.1 vs. UniProtKB/Swiss-Prot
Match: sp|Q9CA78|NMAT4_ARATH (Nuclear intron maturase 4, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=NMAT4 PE=3 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 4.102e-13
Identity = 38/75 (50.67%), Postives = 48/75 (64.00%), Query Frame = 0 
Query:   39 PRSATYSPDNDHIVGKST----LAMDLASVLEEPKP----KPKPRNRMELKRFFELRIEKRVKEQHTNGKFHDLM 105
            P+SA  + DN  +  K T    LA +LAS++EE         KPR+RMELKR  ELR++KRVKEQ  NGKF DL+
Sbjct:   34 PKSALLATDNAEMASKETGMFSLAGELASLVEESSSHVDDDSKPRSRMELKRSLELRLKKRVKEQCINGKFSDLL 108
[Close]
BLAST of rna-XM_022782502.1 vs. Araport11
Match: AT1G74350.1 (| Intron maturase%2C type II family protein | Chr1:27949022-27951283 REVERSE LENGTH=753 | 201606)

HSP 1 Score: 60.8474 bits (146), Expect = 7.035e-12
Identity = 32/57 (56.14%), Postives = 40/57 (70.18%), Query Frame = 0 
Query:   53 GKSTLAMDLASVLEEPKP----KPKPRNRMELKRFFELRIEKRVKEQHTNGKFHDLM 105
            G  +LA +LAS++EE         KPR+RMELKR  ELR++KRVKEQ  NGKF DL+
Sbjct:    7 GMFSLAGELASLVEESSSHVDDDSKPRSRMELKRSLELRLKKRVKEQCINGKFSDLL 63
[Close]
BLAST of rna-XM_022782502.1 vs. UniProtKB/TrEMBL
Match: tr|A0A3Q0F2Q5|A0A3Q0F2Q5_VIGRR (nuclear intron maturase 4, mitochondrial-like OS=Vigna radiata var. radiata OX=3916 GN=LOC111241893 PE=4 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 9.478e-72
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 0 
Query:    1 MRIVTVANSLKSLRSLHFLRVTSSAPLQFKDKQQFEIQPRSATYSPDNDHIVGKSTLAMDLASVLEEPKPKPKPRNRMELKRFFELRIEKRVKEQHTNGKFHDLMT 106
            MRIVTVANSLKSLRSLHFLRVTSSAPLQFKDKQQFEIQPRSATYSPDNDHIVGKSTLAMDLASVLEEPKPKPKPRNRMELKRFFELRIEKRVKEQHTNGKFHDLMT
Sbjct:    1 MRIVTVANSLKSLRSLHFLRVTSSAPLQFKDKQQFEIQPRSATYSPDNDHIVGKSTLAMDLASVLEEPKPKPKPRNRMELKRFFELRIEKRVKEQHTNGKFHDLMT 106
[Close]
BLAST of rna-XM_022782502.1 vs. UniProtKB/TrEMBL
Match: tr|A0A3Q0F9Y5|A0A3Q0F9Y5_VIGRR (nuclear intron maturase 4, mitochondrial-like isoform X2 OS=Vigna radiata var. radiata OX=3916 GN=LOC106768254 PE=4 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 3.858e-62
Identity = 100/105 (95.24%), Postives = 104/105 (99.05%), Query Frame = 0 
Query:    1 MRIVTVANSLKSLRSLHFLRVTSSAPLQFKDKQQFEIQPRSATYSPDNDHIVGKSTLAMDLASVLEEPKPKPKPRNRMELKRFFELRIEKRVKEQHTNGKFHDLM 105
            MRIVTVANSLKSLRSLHFLRVTSSAPLQFKDKQQFEIQPRSATYSPDNDHIVGKSTLAMDLAS+LEEPKPKPKPR+RMELKRFFELRI+KRVK+QH NGKFHDLM
Sbjct:    1 MRIVTVANSLKSLRSLHFLRVTSSAPLQFKDKQQFEIQPRSATYSPDNDHIVGKSTLAMDLASLLEEPKPKPKPRSRMELKRFFELRIKKRVKQQHINGKFHDLM 105
[Close]
BLAST of rna-XM_022782502.1 vs. UniProtKB/TrEMBL
Match: tr|A0A1S3US16|A0A1S3US16_VIGRR (nuclear intron maturase 4, mitochondrial-like isoform X1 OS=Vigna radiata var. radiata OX=3916 GN=LOC106768254 PE=4 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 4.487e-62
Identity = 100/105 (95.24%), Postives = 104/105 (99.05%), Query Frame = 0 
Query:    1 MRIVTVANSLKSLRSLHFLRVTSSAPLQFKDKQQFEIQPRSATYSPDNDHIVGKSTLAMDLASVLEEPKPKPKPRNRMELKRFFELRIEKRVKEQHTNGKFHDLM 105
            MRIVTVANSLKSLRSLHFLRVTSSAPLQFKDKQQFEIQPRSATYSPDNDHIVGKSTLAMDLAS+LEEPKPKPKPR+RMELKRFFELRI+KRVK+QH NGKFHDLM
Sbjct:    1 MRIVTVANSLKSLRSLHFLRVTSSAPLQFKDKQQFEIQPRSATYSPDNDHIVGKSTLAMDLASLLEEPKPKPKPRSRMELKRFFELRIKKRVKQQHINGKFHDLM 105
[Close]
BLAST of rna-XM_022782502.1 vs. UniProtKB/TrEMBL
Match: tr|A0A4D6KY96|A0A4D6KY96_VIGUN (RNA-directed DNA polymerase OS=Vigna unguiculata OX=3917 GN=DEO72_LG2g1552 PE=4 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 2.692e-43
Identity = 89/105 (84.76%), Postives = 95/105 (90.48%), Query Frame = 0 
Query:    1 MRIVTVANSLKSLRSLHFLRVTSSAPLQFKDKQQFEIQPRSATYSPDNDHIVGKSTLAMDLASVLEEPKPKPKPRNRMELKRFFELRIEKRVKEQHTNGKFHDLM 105
            MRIVT ANSLKSL +LHFLRVTSS PL FKDKQQFE QP S T SPDNDHI GKSTLAMDLAS+LEEPKPKPKP++RMELKRFFELRI+KRVKE+H NGKFHDLM
Sbjct:    1 MRIVTTANSLKSLHNLHFLRVTSSLPLPFKDKQQFETQPHSPTCSPDNDHI-GKSTLAMDLASLLEEPKPKPKPKSRMELKRFFELRIKKRVKEKHANGKFHDLM 104
[Close]
BLAST of rna-XM_022782502.1 vs. UniProtKB/TrEMBL
Match: tr|K7MLH5|K7MLH5_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=100784683 PE=4 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 3.378e-39
Identity = 76/107 (71.03%), Postives = 85/107 (79.44%), Query Frame = 0 
Query:    1 MRIVTVANSLKSLRSLHFLRVTSSAPL--QFKDKQQFEIQPRSATYSPDNDHIVGKSTLAMDLASVLEEPKPKPKPRNRMELKRFFELRIEKRVKEQHTNGKFHDLM 105
            MRIVT AN  KSL +L F+R+TSS PL  +F DK   E  P  ATYSPDN+H VGKSTLAMDLAS+LEEP  KPKP++RME KRF ELRI+KRVKEQH NGKFHDLM
Sbjct:    1 MRIVTTANLFKSLHNLQFIRLTSSLPLLLKFSDKHHVETPPHGATYSPDNEH-VGKSTLAMDLASLLEEPPLKPKPKSRMEQKRFLELRIKKRVKEQHFNGKFHDLM 106
[Close]
BLAST of rna-XM_022782502.1 vs. UniProtKB/TrEMBL
Match: tr|V7CDZ4|V7CDZ4_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_003G215300g PE=4 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 3.479e-39
Identity = 84/107 (78.50%), Postives = 91/107 (85.05%), Query Frame = 0 
Query:    1 MRIVTVANSLKSLRSLHFLRVTSSAPLQFKDKQQFEIQPRSATYSPDNDHIVGKSTLAMDLASVLEEP--KPKPKPRNRMELKRFFELRIEKRVKEQHTNGKFHDLM 105
            MR+VT ANSLKSL SLHFLRVTSS PL FKDKQ FE  P SAT SPDNDH VG+STLAMDLAS+LEE   KPKPKP++RMELKRF ELRI+KRVKEQH NGKF DL+
Sbjct:    1 MRVVTAANSLKSLHSLHFLRVTSSLPLPFKDKQHFETPPHSATNSPDNDH-VGQSTLAMDLASLLEESKPKPKPKPKSRMELKRFLELRIKKRVKEQHANGKFQDLL 106
[Close]
BLAST of rna-XM_022782502.1 vs. UniProtKB/TrEMBL
Match: tr|A0A445G6C5|A0A445G6C5_GLYSO (Nuclear intron maturase 4, mitochondrial isoform A OS=Glycine soja OX=3848 GN=D0Y65_045737 PE=4 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 3.618e-39
Identity = 76/107 (71.03%), Postives = 85/107 (79.44%), Query Frame = 0 
Query:    1 MRIVTVANSLKSLRSLHFLRVTSSAPL--QFKDKQQFEIQPRSATYSPDNDHIVGKSTLAMDLASVLEEPKPKPKPRNRMELKRFFELRIEKRVKEQHTNGKFHDLM 105
            MRIVT AN  KSL +L F+R+TSS PL  +F DK   E  P  ATYSPDN+H VGKSTLAMDLAS+LEEP  KPKP++RME KRF ELRI+KRVKEQH NGKFHDLM
Sbjct:    1 MRIVTTANLFKSLHNLQFIRLTSSLPLLLKFSDKHHVETPPHGATYSPDNEH-VGKSTLAMDLASLLEEPPLKPKPKSRMEQKRFLELRIKKRVKEQHFNGKFHDLM 106
[Close]
BLAST of rna-XM_022782502.1 vs. UniProtKB/TrEMBL
Match: tr|A0A4D6KUY9|A0A4D6KUY9_VIGUN (Uncharacterized protein OS=Vigna unguiculata OX=3917 GN=DEO72_LG2g1557 PE=4 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 7.067e-28
Identity = 51/66 (77.27%), Postives = 54/66 (81.82%), Query Frame = 0 
Query:    1 MRIVTVANSLKSLRSLHFLRVTSSAPLQFKDKQQFEIQPRSATYSPDNDHIVGKSTLAMDLASVLE 66
            MRIVT ANSLKSL SLHF RVTSS P  FKDKQQFE QP S TYSPDN H VGKSTL M++AS+LE
Sbjct:    1 MRIVTAANSLKSLCSLHFFRVTSSLPFPFKDKQQFETQPHSVTYSPDNGHTVGKSTLVMNIASLLE 66
[Close]
BLAST of rna-XM_022782502.1 vs. UniProtKB/TrEMBL
Match: tr|A0A0L9TQ86|A0A0L9TQ86_PHAAN (Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan01g219700 PE=4 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 2.111e-21
Identity = 44/47 (93.62%), Postives = 47/47 (100.00%), Query Frame = 0 
Query:   59 MDLASVLEEPKPKPKPRNRMELKRFFELRIEKRVKEQHTNGKFHDLM 105
            MDLAS+LEEPKPKPKPR+RMELKRFFELRI+KRVKEQHTNGKFHDLM
Sbjct:    1 MDLASLLEEPKPKPKPRSRMELKRFFELRIKKRVKEQHTNGKFHDLM 47
[Close]
BLAST of rna-XM_022782502.1 vs. UniProtKB/TrEMBL
Match: tr|A0A5B6YUB0|A0A5B6YUB0_DAVIN (Uncharacterized protein OS=Davidia involucrata OX=16924 GN=Din_004925 PE=4 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.019e-14
Identity = 51/108 (47.22%), Postives = 65/108 (60.19%), Query Frame = 0 
Query:    4 VTVANSLKS--LRSLHFLRVTSSAPLQ--FKDKQQFEIQPRSATYSPDNDHIVGKSTLAMDLASVLEEPK--PKPKPRNRMELKRFFELRIEKRVKEQHTNGKFHDLM 105
            V   N LK   LRS++ + V SS+ +   F+      +       S D+D  VGK TLA +LAS++EE     + KP+ RMELKR FELRI+KRVKEQ  NGKF DLM
Sbjct:    9 VCKGNLLKCTILRSMNLVGVCSSSVIGIPFERLLGHSVYSTLEAISNDSDKDVGKITLAKNLASLVEESSNLDEKKPKTRMELKRSFELRIKKRVKEQFMNGKFQDLM 116
The following BLAST results are available for this feature:
BLAST of rna-XM_022782502.1 vs. UniProtKB/Swiss-Prot
Analysis Date: 2023-06-20 (Blastp of Vigna radiata cv. VC1973A proteins vs UniProt Swissprot)
Total hits: 1
Match NameE-valueIdentityDescription
sp|Q9CA78|NMAT4_ARATH4.102e-1350.67Nuclear intron maturase 4, mitochondrial OS=Arabid... [more]
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BLAST of rna-XM_022782502.1 vs. Araport11
Analysis Date: 2023-06-20 (Blastp of Vigna radiata cv. VC1973A proteins vs arabidopsis Araport11)
Total hits: 1
Match NameE-valueIdentityDescription
AT1G74350.17.035e-1256.14| Intron maturase%2C type II family protein | Chr1... [more]
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BLAST of rna-XM_022782502.1 vs. UniProtKB/TrEMBL
Analysis Date: 2023-06-20 (Blastp of Vigna radiata cv. VC1973A proteins vs UniProt TrEMBL)
Total hits: 10
Match NameE-valueIdentityDescription
tr|A0A3Q0F2Q5|A0A3Q0F2Q5_VIGRR9.478e-72100.00nuclear intron maturase 4, mitochondrial-like OS=V... [more]
tr|A0A3Q0F9Y5|A0A3Q0F9Y5_VIGRR3.858e-6295.24nuclear intron maturase 4, mitochondrial-like isof... [more]
tr|A0A1S3US16|A0A1S3US16_VIGRR4.487e-6295.24nuclear intron maturase 4, mitochondrial-like isof... [more]
tr|A0A4D6KY96|A0A4D6KY96_VIGUN2.692e-4384.76RNA-directed DNA polymerase OS=Vigna unguiculata O... [more]
tr|K7MLH5|K7MLH5_SOYBN3.378e-3971.03Uncharacterized protein OS=Glycine max OX=3847 GN=... [more]
tr|V7CDZ4|V7CDZ4_PHAVU3.479e-3978.50Uncharacterized protein OS=Phaseolus vulgaris OX=3... [more]
tr|A0A445G6C5|A0A445G6C5_GLYSO3.618e-3971.03Nuclear intron maturase 4, mitochondrial isoform A... [more]
tr|A0A4D6KUY9|A0A4D6KUY9_VIGUN7.067e-2877.27Uncharacterized protein OS=Vigna unguiculata OX=39... [more]
tr|A0A0L9TQ86|A0A0L9TQ86_PHAAN2.111e-2193.62Uncharacterized protein OS=Phaseolus angularis OX=... [more]
tr|A0A5B6YUB0|A0A5B6YUB0_DAVIN1.019e-1447.22Uncharacterized protein OS=Davidia involucrata OX=... [more]
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Sequences
The following sequences are available for this feature:

mRNA sequence

>rna-XM_022782502.1_VrVC1973A-SNU_v1 ID=rna-XM_022782502.1_VrVC1973A-SNU_v1; Name=rna-XM_022782502.1; organism=Vigna radiata; type=mRNA; length=321bp
ATGCGCATTGTTACCGTCGCCAACTCTCTCAAATCACTCCGCAGCCTCCA
CTTCCTTAGAGTCACCTCTTCTGCCCCCCTTCAGTTCAAGGACAAACAGC
AGTTTGAAATACAACCACGCAGCGCCACCTATTCACCGGATAATGATCAC
ATAGTTGGAAAATCAACACTGGCGATGGACCTCGCCTCTGTACTCGAGGA
ACCGAAGCCGAAACCGAAACCCAGGAATCGGATGGAGCTTAAGCGGTTTT
TTGAGCTCCGAATAGAAAAACGGGTCAAGGAGCAACACACCAATGGCAAG
TTCCACGACCTTATGACGTGA
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protein sequence of rna-XM_022782502.1_VrVC1973A-SNU_v1

>rna-XM_022782502.1_VrVC1973A-SNU_v1 ID=rna-XM_022782502.1_VrVC1973A-SNU_v1; Name=rna-XM_022782502.1_VrVC1973A-SNU_v1; organism=Vigna radiata; type=polypeptide; length=106bp
MRIVTVANSLKSLRSLHFLRVTSSAPLQFKDKQQFEIQPRSATYSPDNDH
IVGKSTLAMDLASVLEEPKPKPKPRNRMELKRFFELRIEKRVKEQHTNGK
FHDLMT
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mRNA from alignment at chr06:33695297..33696658-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna-XM_022782502.1_VrVC1973A-SNU_v1 ID=rna-XM_022782502.1_VrVC1973A-SNU_v1; Name=rna-XM_022782502.1; organism=Vigna radiata; type=mRNA; length=1362bp; location=Sequence derived from: chr06:33695297..33696658- (Vigna radiata
TTTTTGAAAGTATAGGATGAAACACCCAAATGAAAAATAGGAGATGCAAA
CTTAATCTGTTCCTAATAGCAGAGTTGGGCCTAGGCCCAAATGAAAAAGG
GTATGACCAGCGGAAATTGGTGGTGCAGAAGCAAGCAAATATTTTTTCTC
TCGTTTTTTGGTTTGGCCCTCGTAGGTCCAGCAAGGCTCAGACAGCAAAC
AAAGGGTGCAGCAAAAGGTTTTTTTTTTTTTTTTTATTATACATTATTTT
TTTAAAAATAAAAAATAAACGGCCAAACCAGGGGAATCGCCTCCGCTGCA
CGCACAACGCCACCACCCGACCGGCCACAGCTCCCGTCCGGCAAGCCCTA
GCGTCGCCGGCGTCACTCTCAAATCGCCGGCAGCCATCCCCTGAAGCCAC
CACCGTCAACCCCTTTTCTTCTCTCTCTCGCACTAGCCTAGGGCTGCGCC
ACCGCACCGCCGGCGACCACCCTGCCAACGTCAAAGCCGCTGTGCAGCGA
ACACCATTTCTCACGCGTTTCTTCGCACCATCCGACGCATCACGCCATCA
ACGGCGGCGCCACCACGGCGACTTCCAATCACGAACCTGCGGCAATTCCC
CCACGTTCGAACCTCGTCGCACAGCACCGTTCTTCTTCTTCTTTGGTGAG
CGAATCAAAATTGAAAACCAGCCATTGCGATTGCGCCGCTTTCTTGTTCA
AAATCCATGCTGTGGTGTTCTTCTTCTTGTGCTCCGACGACAATAGATAG
CACCGGTATCAGCTACTTCTTACTTCCCTGTGAAACGACAGGGCCGTATA
CTTGTATTCATCAGTATGCGCATTGTTACCGTCGCCAACTCTCTCAAATC
ACTCCGCAGCCTCCACTTCCTTAGAGTCACCTCTTCTGCCCCCCTTCAGT
TCAAGGGTAAGCCAAACATCTCTTCCAATTTTGTTATTGTCATTCTTCAA
TTCCATATTTATGATGACAAAAACGATAATCAATTATTGTGTATTTTCCC
ATAGACAAACAGCAGTTTGAAATACAACCACGCAGCGCCACCTATTCACC
GGATAATGATCACATAGTTGGAAAATCAACACTGGCGATGGACCTCGCCT
CTGTACTCGAGGAACCGAAGCCGAAACCGAAACCCAGGAATCGGATGGAG
CTTAAGCGGTTTTTTGAGCTCCGAATAGAAAAACGGGTCAAGGAGCAACA
CACCAATGGCAAGTTCCACGACCTTATGACGTGATTTCCAACGCAGAAAC
CCTTCGTGATGCTTACAACTGCATCAGGATCAACTCGAACACCCTGGACG
CGACTTCAAGTTCGAGCCACGACGCTTCATTTTTGGATGACCTAGCTGAA
GAGCTCGAGAAA
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Coding sequence (CDS) from alignment at chr06:33695297..33696658-

>rna-XM_022782502.1_VrVC1973A-SNU_v1 ID=rna-XM_022782502.1_VrVC1973A-SNU_v1; Name=rna-XM_022782502.1; organism=Vigna radiata; type=CDS; length=321bp; location=Sequence derived from: chr06:33695297..33696658- (Vigna radiata
ATGCGCATTGTTACCGTCGCCAACTCTCTCAAATCACTCCGCAGCCTCCA
CTTCCTTAGAGTCACCTCTTCTGCCCCCCTTCAGTTCAAGGACAAACAGC
AGTTTGAAATACAACCACGCAGCGCCACCTATTCACCGGATAATGATCAC
ATAGTTGGAAAATCAACACTGGCGATGGACCTCGCCTCTGTACTCGAGGA
ACCGAAGCCGAAACCGAAACCCAGGAATCGGATGGAGCTTAAGCGGTTTT
TTGAGCTCCGAATAGAAAAACGGGTCAAGGAGCAACACACCAATGGCAAG
TTCCACGACCTTATGACGTGA
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