Homology
BLAST of rna-XM_022782502.1 vs. UniProtKB/Swiss-Prot
Match:
sp|Q9CA78|NMAT4_ARATH (Nuclear intron maturase 4, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=NMAT4 PE=3 SV=2)
HSP 1 Score: 67.0106 bits (162), Expect = 4.102e-13
Identity = 38/75 (50.67%), Postives = 48/75 (64.00%), Query Frame = 0
Query: 39 PRSATYSPDNDHIVGKST----LAMDLASVLEEPKP----KPKPRNRMELKRFFELRIEKRVKEQHTNGKFHDLM 105
P+SA + DN + K T LA +LAS++EE KPR+RMELKR ELR++KRVKEQ NGKF DL+
Sbjct: 34 PKSALLATDNAEMASKETGMFSLAGELASLVEESSSHVDDDSKPRSRMELKRSLELRLKKRVKEQCINGKFSDLL 108
BLAST of rna-XM_022782502.1 vs. Araport11
Match:
AT1G74350.1 (| Intron maturase%2C type II family protein | Chr1:27949022-27951283 REVERSE LENGTH=753 | 201606)
HSP 1 Score: 60.8474 bits (146), Expect = 7.035e-12
Identity = 32/57 (56.14%), Postives = 40/57 (70.18%), Query Frame = 0
Query: 53 GKSTLAMDLASVLEEPKP----KPKPRNRMELKRFFELRIEKRVKEQHTNGKFHDLM 105
G +LA +LAS++EE KPR+RMELKR ELR++KRVKEQ NGKF DL+
Sbjct: 7 GMFSLAGELASLVEESSSHVDDDSKPRSRMELKRSLELRLKKRVKEQCINGKFSDLL 63
BLAST of rna-XM_022782502.1 vs. UniProtKB/TrEMBL
Match:
tr|A0A3Q0F2Q5|A0A3Q0F2Q5_VIGRR (nuclear intron maturase 4, mitochondrial-like OS=Vigna radiata var. radiata OX=3916 GN=LOC111241893 PE=4 SV=1)
HSP 1 Score: 218.009 bits (554), Expect = 9.478e-72
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 0
Query: 1 MRIVTVANSLKSLRSLHFLRVTSSAPLQFKDKQQFEIQPRSATYSPDNDHIVGKSTLAMDLASVLEEPKPKPKPRNRMELKRFFELRIEKRVKEQHTNGKFHDLMT 106
MRIVTVANSLKSLRSLHFLRVTSSAPLQFKDKQQFEIQPRSATYSPDNDHIVGKSTLAMDLASVLEEPKPKPKPRNRMELKRFFELRIEKRVKEQHTNGKFHDLMT
Sbjct: 1 MRIVTVANSLKSLRSLHFLRVTSSAPLQFKDKQQFEIQPRSATYSPDNDHIVGKSTLAMDLASVLEEPKPKPKPRNRMELKRFFELRIEKRVKEQHTNGKFHDLMT 106
BLAST of rna-XM_022782502.1 vs. UniProtKB/TrEMBL
Match:
tr|A0A3Q0F9Y5|A0A3Q0F9Y5_VIGRR (nuclear intron maturase 4, mitochondrial-like isoform X2 OS=Vigna radiata var. radiata OX=3916 GN=LOC106768254 PE=4 SV=1)
HSP 1 Score: 211.46 bits (537), Expect = 3.858e-62
Identity = 100/105 (95.24%), Postives = 104/105 (99.05%), Query Frame = 0
Query: 1 MRIVTVANSLKSLRSLHFLRVTSSAPLQFKDKQQFEIQPRSATYSPDNDHIVGKSTLAMDLASVLEEPKPKPKPRNRMELKRFFELRIEKRVKEQHTNGKFHDLM 105
MRIVTVANSLKSLRSLHFLRVTSSAPLQFKDKQQFEIQPRSATYSPDNDHIVGKSTLAMDLAS+LEEPKPKPKPR+RMELKRFFELRI+KRVK+QH NGKFHDLM
Sbjct: 1 MRIVTVANSLKSLRSLHFLRVTSSAPLQFKDKQQFEIQPRSATYSPDNDHIVGKSTLAMDLASLLEEPKPKPKPRSRMELKRFFELRIKKRVKQQHINGKFHDLM 105
BLAST of rna-XM_022782502.1 vs. UniProtKB/TrEMBL
Match:
tr|A0A1S3US16|A0A1S3US16_VIGRR (nuclear intron maturase 4, mitochondrial-like isoform X1 OS=Vigna radiata var. radiata OX=3916 GN=LOC106768254 PE=4 SV=1)
HSP 1 Score: 211.46 bits (537), Expect = 4.487e-62
Identity = 100/105 (95.24%), Postives = 104/105 (99.05%), Query Frame = 0
Query: 1 MRIVTVANSLKSLRSLHFLRVTSSAPLQFKDKQQFEIQPRSATYSPDNDHIVGKSTLAMDLASVLEEPKPKPKPRNRMELKRFFELRIEKRVKEQHTNGKFHDLM 105
MRIVTVANSLKSLRSLHFLRVTSSAPLQFKDKQQFEIQPRSATYSPDNDHIVGKSTLAMDLAS+LEEPKPKPKPR+RMELKRFFELRI+KRVK+QH NGKFHDLM
Sbjct: 1 MRIVTVANSLKSLRSLHFLRVTSSAPLQFKDKQQFEIQPRSATYSPDNDHIVGKSTLAMDLASLLEEPKPKPKPRSRMELKRFFELRIKKRVKQQHINGKFHDLM 105
BLAST of rna-XM_022782502.1 vs. UniProtKB/TrEMBL
Match:
tr|A0A4D6KY96|A0A4D6KY96_VIGUN (RNA-directed DNA polymerase OS=Vigna unguiculata OX=3917 GN=DEO72_LG2g1552 PE=4 SV=1)
HSP 1 Score: 160.614 bits (405), Expect = 2.692e-43
Identity = 89/105 (84.76%), Postives = 95/105 (90.48%), Query Frame = 0
Query: 1 MRIVTVANSLKSLRSLHFLRVTSSAPLQFKDKQQFEIQPRSATYSPDNDHIVGKSTLAMDLASVLEEPKPKPKPRNRMELKRFFELRIEKRVKEQHTNGKFHDLM 105
MRIVT ANSLKSL +LHFLRVTSS PL FKDKQQFE QP S T SPDNDHI GKSTLAMDLAS+LEEPKPKPKP++RMELKRFFELRI+KRVKE+H NGKFHDLM
Sbjct: 1 MRIVTTANSLKSLHNLHFLRVTSSLPLPFKDKQQFETQPHSPTCSPDNDHI-GKSTLAMDLASLLEEPKPKPKPKSRMELKRFFELRIKKRVKEKHANGKFHDLM 104
BLAST of rna-XM_022782502.1 vs. UniProtKB/TrEMBL
Match:
tr|K7MLH5|K7MLH5_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=100784683 PE=4 SV=1)
HSP 1 Score: 148.673 bits (374), Expect = 3.378e-39
Identity = 76/107 (71.03%), Postives = 85/107 (79.44%), Query Frame = 0
Query: 1 MRIVTVANSLKSLRSLHFLRVTSSAPL--QFKDKQQFEIQPRSATYSPDNDHIVGKSTLAMDLASVLEEPKPKPKPRNRMELKRFFELRIEKRVKEQHTNGKFHDLM 105
MRIVT AN KSL +L F+R+TSS PL +F DK E P ATYSPDN+H VGKSTLAMDLAS+LEEP KPKP++RME KRF ELRI+KRVKEQH NGKFHDLM
Sbjct: 1 MRIVTTANLFKSLHNLQFIRLTSSLPLLLKFSDKHHVETPPHGATYSPDNEH-VGKSTLAMDLASLLEEPPLKPKPKSRMEQKRFLELRIKKRVKEQHFNGKFHDLM 106
BLAST of rna-XM_022782502.1 vs. UniProtKB/TrEMBL
Match:
tr|V7CDZ4|V7CDZ4_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_003G215300g PE=4 SV=1)
HSP 1 Score: 148.673 bits (374), Expect = 3.479e-39
Identity = 84/107 (78.50%), Postives = 91/107 (85.05%), Query Frame = 0
Query: 1 MRIVTVANSLKSLRSLHFLRVTSSAPLQFKDKQQFEIQPRSATYSPDNDHIVGKSTLAMDLASVLEEP--KPKPKPRNRMELKRFFELRIEKRVKEQHTNGKFHDLM 105
MR+VT ANSLKSL SLHFLRVTSS PL FKDKQ FE P SAT SPDNDH VG+STLAMDLAS+LEE KPKPKP++RMELKRF ELRI+KRVKEQH NGKF DL+
Sbjct: 1 MRVVTAANSLKSLHSLHFLRVTSSLPLPFKDKQHFETPPHSATNSPDNDH-VGQSTLAMDLASLLEESKPKPKPKPKSRMELKRFLELRIKKRVKEQHANGKFQDLL 106
BLAST of rna-XM_022782502.1 vs. UniProtKB/TrEMBL
Match:
tr|A0A445G6C5|A0A445G6C5_GLYSO (Nuclear intron maturase 4, mitochondrial isoform A OS=Glycine soja OX=3848 GN=D0Y65_045737 PE=4 SV=1)
HSP 1 Score: 148.673 bits (374), Expect = 3.618e-39
Identity = 76/107 (71.03%), Postives = 85/107 (79.44%), Query Frame = 0
Query: 1 MRIVTVANSLKSLRSLHFLRVTSSAPL--QFKDKQQFEIQPRSATYSPDNDHIVGKSTLAMDLASVLEEPKPKPKPRNRMELKRFFELRIEKRVKEQHTNGKFHDLM 105
MRIVT AN KSL +L F+R+TSS PL +F DK E P ATYSPDN+H VGKSTLAMDLAS+LEEP KPKP++RME KRF ELRI+KRVKEQH NGKFHDLM
Sbjct: 1 MRIVTTANLFKSLHNLQFIRLTSSLPLLLKFSDKHHVETPPHGATYSPDNEH-VGKSTLAMDLASLLEEPPLKPKPKSRMEQKRFLELRIKKRVKEQHFNGKFHDLM 106
BLAST of rna-XM_022782502.1 vs. UniProtKB/TrEMBL
Match:
tr|A0A4D6KUY9|A0A4D6KUY9_VIGUN (Uncharacterized protein OS=Vigna unguiculata OX=3917 GN=DEO72_LG2g1557 PE=4 SV=1)
HSP 1 Score: 105.916 bits (263), Expect = 7.067e-28
Identity = 51/66 (77.27%), Postives = 54/66 (81.82%), Query Frame = 0
Query: 1 MRIVTVANSLKSLRSLHFLRVTSSAPLQFKDKQQFEIQPRSATYSPDNDHIVGKSTLAMDLASVLE 66
MRIVT ANSLKSL SLHF RVTSS P FKDKQQFE QP S TYSPDN H VGKSTL M++AS+LE
Sbjct: 1 MRIVTAANSLKSLCSLHFFRVTSSLPFPFKDKQQFETQPHSVTYSPDNGHTVGKSTLVMNIASLLE 66
BLAST of rna-XM_022782502.1 vs. UniProtKB/TrEMBL
Match:
tr|A0A0L9TQ86|A0A0L9TQ86_PHAAN (Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan01g219700 PE=4 SV=1)
HSP 1 Score: 97.8265 bits (242), Expect = 2.111e-21
Identity = 44/47 (93.62%), Postives = 47/47 (100.00%), Query Frame = 0
Query: 59 MDLASVLEEPKPKPKPRNRMELKRFFELRIEKRVKEQHTNGKFHDLM 105
MDLAS+LEEPKPKPKPR+RMELKRFFELRI+KRVKEQHTNGKFHDLM
Sbjct: 1 MDLASLLEEPKPKPKPRSRMELKRFFELRIKKRVKEQHTNGKFHDLM 47
BLAST of rna-XM_022782502.1 vs. UniProtKB/TrEMBL
Match:
tr|A0A5B6YUB0|A0A5B6YUB0_DAVIN (Uncharacterized protein OS=Davidia involucrata OX=16924 GN=Din_004925 PE=4 SV=1)
HSP 1 Score: 78.9518 bits (193), Expect = 1.019e-14
Identity = 51/108 (47.22%), Postives = 65/108 (60.19%), Query Frame = 0
Query: 4 VTVANSLKS--LRSLHFLRVTSSAPLQ--FKDKQQFEIQPRSATYSPDNDHIVGKSTLAMDLASVLEEPK--PKPKPRNRMELKRFFELRIEKRVKEQHTNGKFHDLM 105
V N LK LRS++ + V SS+ + F+ + S D+D VGK TLA +LAS++EE + KP+ RMELKR FELRI+KRVKEQ NGKF DLM
Sbjct: 9 VCKGNLLKCTILRSMNLVGVCSSSVIGIPFERLLGHSVYSTLEAISNDSDKDVGKITLAKNLASLVEESSNLDEKKPKTRMELKRSFELRIKKRVKEQFMNGKFQDLM 116
The following BLAST results are available for this feature:
BLAST of rna-XM_022782502.1 vs. UniProtKB/TrEMBL
Analysis Date: 2023-06-20 (
Blastp of Vigna radiata cv. VC1973A proteins vs UniProt TrEMBL )
Total hits: 10
50 100 150 200 250 300 Expect = 9.48e-72 / Id = 100.00 Expect = 3.86e-62 / Id = 95.24 Expect = 4.49e-62 / Id = 95.24 Expect = 2.69e-43 / Id = 84.76 Expect = 3.38e-39 / Id = 71.03 Expect = 3.48e-39 / Id = 78.50 Expect = 3.62e-39 / Id = 71.03 Expect = 7.07e-28 / Id = 77.27 Expect = 2.11e-21 / Id = 93.62 Expect = 1.02e-14 / Id = 47.22 Sequence tr|A0A3Q0F2Q5|A0A3Q0F2Q5_VIGRR tr|A0A3Q0F9Y5|A0A3Q0F9Y5_VIGRR tr|A0A1S3US16|A0A1S3US16_VIGRR tr|A0A4D6KY96|A0A4D6KY96_VIGUN tr|K7MLH5|K7MLH5_SOYBN tr|V7CDZ4|V7CDZ4_PHAVU tr|A0A445G6C5|A0A445G6C5_GLYSO tr|A0A4D6KUY9|A0A4D6KUY9_VIGUN tr|A0A0L9TQ86|A0A0L9TQ86_PHAAN tr|A0A5B6YUB0|A0A5B6YUB0_DAVIN
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Sequences
The
following sequences are available for this feature:
mRNA sequence
>rna-XM_022782502.1_VrVC1973A-SNU_v1 ID=rna-XM_022782502.1_VrVC1973A-SNU_v1; Name=rna-XM_022782502.1; organism=Vigna radiata; type=mRNA; length=321bp ATGCGCATTGTTACCGTCGCCAACTCTCTCAAATCACTCCGCAGCCTCCA CTTCCTTAGAGTCACCTCTTCTGCCCCCCTTCAGTTCAAGGACAAACAGC AGTTTGAAATACAACCACGCAGCGCCACCTATTCACCGGATAATGATCAC ATAGTTGGAAAATCAACACTGGCGATGGACCTCGCCTCTGTACTCGAGGA ACCGAAGCCGAAACCGAAACCCAGGAATCGGATGGAGCTTAAGCGGTTTT TTGAGCTCCGAATAGAAAAACGGGTCAAGGAGCAACACACCAATGGCAAG TTCCACGACCTTATGACGTGA back to top protein sequence of rna-XM_022782502.1_VrVC1973A-SNU_v1
>rna-XM_022782502.1_VrVC1973A-SNU_v1 ID=rna-XM_022782502.1_VrVC1973A-SNU_v1; Name=rna-XM_022782502.1_VrVC1973A-SNU_v1; organism=Vigna radiata; type=polypeptide; length=106bp MRIVTVANSLKSLRSLHFLRVTSSAPLQFKDKQQFEIQPRSATYSPDNDH IVGKSTLAMDLASVLEEPKPKPKPRNRMELKRFFELRIEKRVKEQHTNGK FHDLMT back to top mRNA from alignment at chr06:33695297..33696658-
Legend: exon polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna-XM_022782502.1_VrVC1973A-SNU_v1 ID=rna-XM_022782502.1_VrVC1973A-SNU_v1; Name=rna-XM_022782502.1; organism=Vigna radiata; type=mRNA; length=1362bp; location=Sequence derived from: chr06:33695297..33696658- (Vigna radiataTTTTTGAAAGTATAGGATGAAACACCCAAATGAAAAATAGGAGATGCAAA
CTTAATCTGTTCCTAATAGCAGAGTTGGGCCTAGGCCCAAATGAAAAAGG
GTATGACCAGCGGAAATTGGTGGTGCAGAAGCAAGCAAATATTTTTTCTC
TCGTTTTTTGGTTTGGCCCTCGTAGGTCCAGCAAGGCTCAGACAGCAAAC
AAAGGGTGCAGCAAAAGGTTTTTTTTTTTTTTTTTATTATACATTATTTT
TTTAAAAATAAAAAATAAACGGCCAAACCAGGGGAATCGCCTCCGCTGCA
CGCACAACGCCACCACCCGACCGGCCACAGCTCCCGTCCGGCAAGCCCTA
GCGTCGCCGGCGTCACTCTCAAATCGCCGGCAGCCATCCCCTGAAGCCAC
CACCGTCAACCCCTTTTCTTCTCTCTCTCGCACTAGCCTAGGGCTGCGCC
ACCGCACCGCCGGCGACCACCCTGCCAACGTCAAAGCCGCTGTGCAGCGA
ACACCATTTCTCACGCGTTTCTTCGCACCATCCGACGCATCACGCCATCA
ACGGCGGCGCCACCACGGCGACTTCCAATCACGAACCTGCGGCAATTCCC
CCACGTTCGAACCTCGTCGCACAGCACCGTTCTTCTTCTTCTTTGGTGAG
CGAATCAAAATTGAAAACCAGCCATTGCGATTGCGCCGCTTTCTTGTTCA
AAATCCATGCTGTGGTGTTCTTCTTCTTGTGCTCCGACGACAATAGATAG
CACCGGTATCAGCTACTTCTTACTTCCCTGTGAAACGACAGGGCCGTATA
CTTGTATTCATCAGTATGCGCATTGTTACCGTCGCCAACTCTCTCAAATC
ACTCCGCAGCCTCCACTTCCTTAGAGTCACCTCTTCTGCCCCCCTTCAGT
TCAAGG GTAAGCCAAACATCTCTTCCAATTTTGTTATTGTCATTCTTCAA
TTCCATATTTATGATGACAAAAACGATAATCAATTATTGTGTATTTTCCC
ATAGACAAACAGCAGTTTGAAATACAACCACGCAGCGCCACCTATTCACC
GGATAATGATCACATAGTTGGAAAATCAACACTGGCGATGGACCTCGCCT
CTGTACTCGAGGAACCGAAGCCGAAACCGAAACCCAGGAATCGGATGGAG
CTTAAGCGGTTTTTTGAGCTCCGAATAGAAAAACGGGTCAAGGAGCAACA
CACCAATGGCAAGTTCCACGACCTTATGACGTGA TTTCCAACGCAGAAAC
CCTTCGTGATGCTTACAACTGCATCAGGATCAACTCGAACACCCTGGACG
CGACTTCAAGTTCGAGCCACGACGCTTCATTTTTGGATGACCTAGCTGAA
GAGCTCGAGAAA back to top Coding sequence (CDS) from alignment at chr06:33695297..33696658-
>rna-XM_022782502.1_VrVC1973A-SNU_v1 ID=rna-XM_022782502.1_VrVC1973A-SNU_v1; Name=rna-XM_022782502.1; organism=Vigna radiata; type=CDS; length=321bp; location=Sequence derived from: chr06:33695297..33696658- (Vigna radiata ATGCGCATTGTTACCGTCGCCAACTCTCTCAAATCACTCCGCAGCCTCCA CTTCCTTAGAGTCACCTCTTCTGCCCCCCTTCAGTTCAAGGACAAACAGC AGTTTGAAATACAACCACGCAGCGCCACCTATTCACCGGATAATGATCAC ATAGTTGGAAAATCAACACTGGCGATGGACCTCGCCTCTGTACTCGAGGA ACCGAAGCCGAAACCGAAACCCAGGAATCGGATGGAGCTTAAGCGGTTTT TTGAGCTCCGAATAGAAAAACGGGTCAAGGAGCAACACACCAATGGCAAG TTCCACGACCTTATGACGTGA back to top