rna-XM_014650912.1

Transcript Overview
Namerna-XM_014650912.1
Unique Namerna-XM_014650912.1_VrVC1973A-SNU_v1
TypemRNA
OrganismVigna radiata (Mung bean, green gram)
Sequence length354
Productuncharacterized LOC106766159
References
External references for this mRNA
DatabaseAccession
GeneID106766159
GenbankXM_014650912.1
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
chr07chromosomechr07:19856673..19857026 -Vigna radiata cv. VC1973A genome v6.0n/a
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
gene-LOC106766159gene-LOC106766159_VrVC1973A-SNU_v1Vigna radiatagene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-XM_014650912.1-1exon-XM_014650912.1-1_VrVC1973A-SNU_v1Vigna radiataexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
cds-XP_014506398.1cds-XP_014506398.1_VrVC1973A-SNU_v1Vigna radiataCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna-XM_014650912.1_VrVC1973A-SNU_v1rna-XM_014650912.1_VrVC1973A-SNU_v1Vigna radiatapolypeptide
rna-XM_014650912.1_VrVC1973A-SNU_v1rna-XM_014650912.1_VrVC1973A-SNU_v1-proteinVigna radiatapolypeptide


Homology
[Close]
BLAST of rna-XM_014650912.1 vs. UniProtKB/TrEMBL
Match: tr|A0A1S3UK33|A0A1S3UK33_VIGRR (uncharacterized protein LOC106766159 OS=Vigna radiata var. radiata OX=3916 GN=LOC106766159 PE=4 SV=1)

HSP 1 Score: 233.032 bits (593), Expect = 2.397e-77
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 0 
Query:    1 MSLKSAKAIWDYLKEEYDGDDRIKGMKVLNLIRDFELQKMKESETIKEYSERLLNITNRVRLLGSEFKDSRIVEKILVMVPERFEAIITTLENTKDFSKITLAELLNSLQAQEQRRV 117
            MSLKSAKAIWDYLKEEYDGDDRIKGMKVLNLIRDFELQKMKESETIKEYSERLLNITNRVRLLGSEFKDSRIVEKILVMVPERFEAIITTLENTKDFSKITLAELLNSLQAQEQRRV
Sbjct:    1 MSLKSAKAIWDYLKEEYDGDDRIKGMKVLNLIRDFELQKMKESETIKEYSERLLNITNRVRLLGSEFKDSRIVEKILVMVPERFEAIITTLENTKDFSKITLAELLNSLQAQEQRRV 117
[Close]
BLAST of rna-XM_014650912.1 vs. UniProtKB/TrEMBL
Match: tr|A0A6A6K9E8|A0A6A6K9E8_HEVBR (Uncharacterized protein OS=Hevea brasiliensis OX=3981 GN=GH714_030364 PE=4 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 7.949e-66
Identity = 104/117 (88.89%), Postives = 107/117 (91.45%), Query Frame = 0 
Query:    1 MSLKSAKAIWDYLKEEYDGDDRIKGMKVLNLIRDFELQKMKESETIKEYSERLLNITNRVRLLGSEFKDSRIVEKILVMVPERFEAIITTLENTKDFSKITLAELLNSLQAQEQRRV 117
            MSLKSAKAIWDYLK EY+GDD IKGM+VLNLIRDFELQKMK+SETIKEYSERLLNI NRVRLLGSEFKDSRIVE  LV VPERFEA ITTLENTKD S ITL ELLNSLQAQEQRRV
Sbjct:    1 MSLKSAKAIWDYLKAEYEGDDPIKGMQVLNLIRDFELQKMKDSETIKEYSERLLNIANRVRLLGSEFKDSRIVENFLVTVPERFEATITTLENTKDLSNITLVELLNSLQAQEQRRV 117
[Close]
BLAST of rna-XM_014650912.1 vs. UniProtKB/TrEMBL
Match: tr|A0A1S3UZV0|A0A1S3UZV0_VIGRR (uncharacterized protein LOC106770111 OS=Vigna radiata var. radiata OX=3916 GN=LOC106770111 PE=4 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 1.639e-64
Identity = 102/117 (87.18%), Postives = 107/117 (91.45%), Query Frame = 0 
Query:    1 MSLKSAKAIWDYLKEEYDGDDRIKGMKVLNLIRDFELQKMKESETIKEYSERLLNITNRVRLLGSEFKDSRIVEKILVMVPERFEAIITTLENTKDFSKITLAELLNSLQAQEQRRV 117
            M+L SAKAIWDYLKEEYDGDDRIKGM+VLNLIRDFELQKMKESETI EYS+RLLNI N+VRLLG EFKDSRIVEK+LV V ERFEA ITTLENTKDFS ITL ELLNSLQAQEQRR 
Sbjct:   88 MTLNSAKAIWDYLKEEYDGDDRIKGMQVLNLIRDFELQKMKESETITEYSKRLLNIANKVRLLGFEFKDSRIVEKVLVTVLERFEATITTLENTKDFSNITLVELLNSLQAQEQRRA 204
[Close]
BLAST of rna-XM_014650912.1 vs. UniProtKB/TrEMBL
Match: tr|A0A6A6KCP0|A0A6A6KCP0_HEVBR (DUF4219 domain-containing protein OS=Hevea brasiliensis OX=3981 GN=GH714_008762 PE=4 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 9.499e-64
Identity = 101/117 (86.32%), Postives = 108/117 (92.31%), Query Frame = 0 
Query:    1 MSLKSAKAIWDYLKEEYDGDDRIKGMKVLNLIRDFELQKMKESETIKEYSERLLNITNRVRLLGSEFKDSRIVEKILVMVPERFEAIITTLENTKDFSKITLAELLNSLQAQEQRRV 117
            MSLKSAKAIWDYLK E +GDDRIKG++VLNLIRDFELQKMK+SETIKEYSERLLN+ NRVRLLGSEFKDS IVEKILV VPERF+A ITTLENTKD S ITL ELLNSLQAQ+QRRV
Sbjct:   91 MSLKSAKAIWDYLKAECEGDDRIKGIQVLNLIRDFELQKMKDSETIKEYSERLLNVANRVRLLGSEFKDSCIVEKILVAVPERFKATITTLENTKDLSNITLVELLNSLQAQKQRRV 207
[Close]
BLAST of rna-XM_014650912.1 vs. UniProtKB/TrEMBL
Match: tr|A0A0V0H1J0|A0A0V0H1J0_SOLCH (Putative ovule protein (Fragment) OS=Solanum chacoense OX=4108 PE=4 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 2.546e-62
Identity = 95/117 (81.20%), Postives = 108/117 (92.31%), Query Frame = 0 
Query:    1 MSLKSAKAIWDYLKEEYDGDDRIKGMKVLNLIRDFELQKMKESETIKEYSERLLNITNRVRLLGSEFKDSRIVEKILVMVPERFEAIITTLENTKDFSKITLAELLNSLQAQEQRRV 117
            MSLKSAK +WDYLK EY+GD+RI+GM+VLNL+R+FELQ+MKESETIKEYS+RLLNI NRVRLLGS F DSRIVEKILV VPE+FEA +TTLENTKD SKITLAELL++ QAQEQRRV
Sbjct:   79 MSLKSAKEVWDYLKTEYEGDERIRGMQVLNLVREFELQRMKESETIKEYSDRLLNIANRVRLLGSTFNDSRIVEKILVTVPEKFEATVTTLENTKDLSKITLAELLSAFQAQEQRRV 195
[Close]
BLAST of rna-XM_014650912.1 vs. UniProtKB/TrEMBL
Match: tr|A0A1U8GM79|A0A1U8GM79_CAPAN (uncharacterized protein LOC107867456 OS=Capsicum annuum OX=4072 GN=LOC107867456 PE=4 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 1.389e-61
Identity = 92/117 (78.63%), Postives = 107/117 (91.45%), Query Frame = 0 
Query:    1 MSLKSAKAIWDYLKEEYDGDDRIKGMKVLNLIRDFELQKMKESETIKEYSERLLNITNRVRLLGSEFKDSRIVEKILVMVPERFEAIITTLENTKDFSKITLAELLNSLQAQEQRRV 117
            MSL+SAK +WDYLK EY+GD+RI+GM+VLNL+R+FELQ+MKESETIKEYS+RLLN+ NR+RLLGS F DSRIVEKILV  P+RFEA ITTLENTKD SKITLAELL++ QAQEQRRV
Sbjct:    1 MSLESAKEVWDYLKTEYEGDERIRGMQVLNLVREFELQRMKESETIKEYSDRLLNLANRIRLLGSAFNDSRIVEKILVTAPKRFEATITTLENTKDLSKITLAELLSAFQAQEQRRV 117
[Close]
BLAST of rna-XM_014650912.1 vs. UniProtKB/TrEMBL
Match: tr|A0A1U8H787|A0A1U8H787_CAPAN (uncharacterized protein LOC107873874 OS=Capsicum annuum OX=4072 GN=LOC107873874 PE=4 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 2.165e-61
Identity = 96/116 (82.76%), Postives = 106/116 (91.38%), Query Frame = 0 
Query:    1 MSLKSAKAIWDYLKEEYDGDDRIKGMKVLNLIRDFELQKMKESETIKEYSERLLNITNRVRLLGSEFKDSRIVEKILVMVPERFEAIITTLENTKDFSKITLAELLNSLQAQEQRR 116
            MSLKSAK IWDYLK EY+GD+RI+GM+VLNLIRDFE++KMKE ETIK+YSERLLN+ NRVRLLGS F DSRIVEKILV +PERFEA ITTLENTKD SKITLAELLN LQAQEQR+
Sbjct:   88 MSLKSAKDIWDYLKSEYEGDERIRGMQVLNLIRDFEMRKMKEIETIKDYSERLLNVANRVRLLGSVFNDSRIVEKILVTMPERFEATITTLENTKDLSKITLAELLNDLQAQEQRK 203
[Close]
BLAST of rna-XM_014650912.1 vs. UniProtKB/TrEMBL
Match: tr|A0A1S3UAP4|A0A1S3UAP4_VIGRR (uncharacterized protein LOC106763408 OS=Vigna radiata var. radiata OX=3916 GN=LOC106763408 PE=4 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 2.364e-61
Identity = 96/103 (93.20%), Postives = 99/103 (96.12%), Query Frame = 0 
Query:    9 IWDYLKEEYDGDDRIKGMKVLNLIRDFELQKMKESETIKEYSERLLNITNRVRLLGSEFKDSRIVEKILVMVPERFEAIITTLENTKDFSKITLAELLNSLQA 111
            IWDYLKEEYDGDDRIKGMKVLNLIRDFELQKMKESETIKEYSERLLNI N+VRLLGSEFKDS IVEKILV+ PERFEAIITTLENTKDF KITLAELLN+LQA
Sbjct:   77 IWDYLKEEYDGDDRIKGMKVLNLIRDFELQKMKESETIKEYSERLLNIANKVRLLGSEFKDSHIVEKILVLAPERFEAIITTLENTKDFFKITLAELLNALQA 179
[Close]
BLAST of rna-XM_014650912.1 vs. UniProtKB/TrEMBL
Match: tr|A0A2Z7ATY0|A0A2Z7ATY0_9LAMI (Uncharacterized protein OS=Dorcoceras hygrometricum OX=472368 GN=F511_07437 PE=4 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 2.005e-60
Identity = 95/117 (81.20%), Postives = 108/117 (92.31%), Query Frame = 0 
Query:    1 MSLKSAKAIWDYLKEEYDGDDRIKGMKVLNLIRDFELQKMKESETIKEYSERLLNITNRVRLLGSEFKDSRIVEKILVMVPERFEAIITTLENTKDFSKITLAELLNSLQAQEQRRV 117
            MSLKSAK IWDYLK EY+GD+RIKGM+VLNLIR+FELQ+MK+SETIKEYS+RLL+I N+VRLL SEF DSRIVEKILV VPER+EA ITTLENTKD SKI+LA LLN+LQAQEQRR+
Sbjct:    1 MSLKSAKEIWDYLKIEYEGDERIKGMQVLNLIREFELQRMKDSETIKEYSDRLLSIANKVRLLESEFTDSRIVEKILVTVPERYEATITTLENTKDLSKISLAGLLNALQAQEQRRL 117
[Close]
BLAST of rna-XM_014650912.1 vs. UniProtKB/TrEMBL
Match: tr|A0A1S3UZF0|A0A1S3UZF0_VIGRR (uncharacterized protein LOC106770117 OS=Vigna radiata var. radiata OX=3916 GN=LOC106770117 PE=4 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 4.704e-60
Identity = 98/117 (83.76%), Postives = 103/117 (88.03%), Query Frame = 0 
Query:    1 MSLKSAKAIWDYLKEEYDGDDRIKGMKVLNLIRDFELQKMKESETIKEYSERLLNITNRVRLLGSEFKDSRIVEKILVMVPERFEAIITTLENTKDFSKITLAELLNSLQAQEQRRV 117
            MSLKSAKA+WDYLKEEYD +++IK MKV NLIRDFELQKMKESET+KEY  RLLNI N VRLLG EFKDSRIVEKILV VPERF A ITTLENTKDFSKITL ELLN LQAQEQRR 
Sbjct:    1 MSLKSAKAMWDYLKEEYDENNQIKSMKVSNLIRDFELQKMKESETMKEYFMRLLNIANIVRLLGFEFKDSRIVEKILVTVPERFGATITTLENTKDFSKITLTELLNFLQAQEQRRA 117
The following BLAST results are available for this feature:
BLAST of rna-XM_014650912.1 vs.
Analysis Date: 2023-06-20 (Blastp of Vigna radiata cv. VC1973A proteins vs UniProt Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of rna-XM_014650912.1 vs.
Analysis Date: 2023-06-20 (Blastp of Vigna radiata cv. VC1973A proteins vs arabidopsis Araport11)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of rna-XM_014650912.1 vs. UniProtKB/TrEMBL
Analysis Date: 2023-06-20 (Blastp of Vigna radiata cv. VC1973A proteins vs UniProt TrEMBL)
Total hits: 10
Match NameE-valueIdentityDescription
tr|A0A1S3UK33|A0A1S3UK33_VIGRR2.397e-77100.00uncharacterized protein LOC106766159 OS=Vigna radi... [more]
tr|A0A6A6K9E8|A0A6A6K9E8_HEVBR7.949e-6688.89Uncharacterized protein OS=Hevea brasiliensis OX=3... [more]
tr|A0A1S3UZV0|A0A1S3UZV0_VIGRR1.639e-6487.18uncharacterized protein LOC106770111 OS=Vigna radi... [more]
tr|A0A6A6KCP0|A0A6A6KCP0_HEVBR9.499e-6486.32DUF4219 domain-containing protein OS=Hevea brasili... [more]
tr|A0A0V0H1J0|A0A0V0H1J0_SOLCH2.546e-6281.20Putative ovule protein (Fragment) OS=Solanum chaco... [more]
tr|A0A1U8GM79|A0A1U8GM79_CAPAN1.389e-6178.63uncharacterized protein LOC107867456 OS=Capsicum a... [more]
tr|A0A1U8H787|A0A1U8H787_CAPAN2.165e-6182.76uncharacterized protein LOC107873874 OS=Capsicum a... [more]
tr|A0A1S3UAP4|A0A1S3UAP4_VIGRR2.364e-6193.20uncharacterized protein LOC106763408 OS=Vigna radi... [more]
tr|A0A2Z7ATY0|A0A2Z7ATY0_9LAMI2.005e-6081.20Uncharacterized protein OS=Dorcoceras hygrometricu... [more]
tr|A0A1S3UZF0|A0A1S3UZF0_VIGRR4.704e-6083.76uncharacterized protein LOC106770117 OS=Vigna radi... [more]
back to top
InterPro
Analysis Name: InterProScan Analysis for Vigna radiata cv. VC1973A genome v1.0
Date Performed: 2023-06-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF14223Retrotran_gag_2coord: 2..116
e-value: 7.6E-22
score: 77.5
NoneNo IPR availablePANTHERPTHR35317OS04G0629600 PROTEINcoord: 3..115

Sequences
The following sequences are available for this feature:

mRNA sequence

>rna-XM_014650912.1_VrVC1973A-SNU_v1 ID=rna-XM_014650912.1_VrVC1973A-SNU_v1; Name=rna-XM_014650912.1; organism=Vigna radiata; type=mRNA; length=354bp
ATGTCTCTAAAGTCAGCCAAAGCCATATGGGATTATCTCAAAGAAGAATA
TGATGGAGATGATCGAATTAAAGGCATGAAGGTGTTGAATCTCATTAGAG
ACTTTGAATTGCAGAAGATGAAAGAATCTGAAACTATTAAAGAGTACTCA
GAGAGGCTTTTGAACATAACAAACAGAGTAAGATTGCTTGGTTCTGAATT
TAAGGACTCTCGTATTGTTGAAAAAATTCTGGTTATGGTACCTGAAAGGT
TTGAAGCTATCATAACCACCTTAGAAAACACTAAGGATTTTTCTAAGATC
ACCTTAGCAGAGTTGCTAAATTCCTTGCAGGCACAAGAACAACGAAGGGT
ATGA
back to top

protein sequence of rna-XM_014650912.1_VrVC1973A-SNU_v1

>rna-XM_014650912.1_VrVC1973A-SNU_v1 ID=rna-XM_014650912.1_VrVC1973A-SNU_v1; Name=rna-XM_014650912.1_VrVC1973A-SNU_v1; organism=Vigna radiata; type=polypeptide; length=117bp
MSLKSAKAIWDYLKEEYDGDDRIKGMKVLNLIRDFELQKMKESETIKEYS
ERLLNITNRVRLLGSEFKDSRIVEKILVMVPERFEAIITTLENTKDFSKI
TLAELLNSLQAQEQRRV
back to top

mRNA from alignment at chr07:19856673..19857026-

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna-XM_014650912.1_VrVC1973A-SNU_v1 ID=rna-XM_014650912.1_VrVC1973A-SNU_v1; Name=rna-XM_014650912.1; organism=Vigna radiata; type=mRNA; length=354bp; location=Sequence derived from: chr07:19856673..19857026- (Vigna radiata
ATGTCTCTAAAGTCAGCCAAAGCCATATGGGATTATCTCAAAGAAGAATA
TGATGGAGATGATCGAATTAAAGGCATGAAGGTGTTGAATCTCATTAGAG
ACTTTGAATTGCAGAAGATGAAAGAATCTGAAACTATTAAAGAGTACTCA
GAGAGGCTTTTGAACATAACAAACAGAGTAAGATTGCTTGGTTCTGAATT
TAAGGACTCTCGTATTGTTGAAAAAATTCTGGTTATGGTACCTGAAAGGT
TTGAAGCTATCATAACCACCTTAGAAAACACTAAGGATTTTTCTAAGATC
ACCTTAGCAGAGTTGCTAAATTCCTTGCAGGCACAAGAACAACGAAGGGT
ATGA
back to top

Coding sequence (CDS) from alignment at chr07:19856673..19857026-

>rna-XM_014650912.1_VrVC1973A-SNU_v1 ID=rna-XM_014650912.1_VrVC1973A-SNU_v1; Name=rna-XM_014650912.1; organism=Vigna radiata; type=CDS; length=354bp; location=Sequence derived from: chr07:19856673..19857026- (Vigna radiata
ATGTCTCTAAAGTCAGCCAAAGCCATATGGGATTATCTCAAAGAAGAATA
TGATGGAGATGATCGAATTAAAGGCATGAAGGTGTTGAATCTCATTAGAG
ACTTTGAATTGCAGAAGATGAAAGAATCTGAAACTATTAAAGAGTACTCA
GAGAGGCTTTTGAACATAACAAACAGAGTAAGATTGCTTGGTTCTGAATT
TAAGGACTCTCGTATTGTTGAAAAAATTCTGGTTATGGTACCTGAAAGGT
TTGAAGCTATCATAACCACCTTAGAAAACACTAAGGATTTTTCTAAGATC
ACCTTAGCAGAGTTGCTAAATTCCTTGCAGGCACAAGAACAACGAAGGGT
ATGA
back to top