Va03G068160.2

Transcript Overview
NameVa03G068160.2
Unique NameVa03G068160.2_Jingnong6
TypemRNA
OrganismVigna angularis (Adzuki bean, red mung bean, azuki)
Sequence length621
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr3chromosomeChr3:41012780..41014953 -Vigna angularis cv. Jingnong6 genome v1.7.1n/a
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
avjavjL087Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjavjL223Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjcanR379Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
avjcaR418Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
avjcaR439Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
avjcanR408Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
avjcaR469Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
avjccR0757Cajanus cajan Asha genome v1.0Cajanus cajan
avjccR0778Cajanus cajan Asha genome v1.0Cajanus cajan
avjccR0786Cajanus cajan Asha genome v1.0Cajanus cajan
avjpsR431Pisum sativum Cameor genome v1aPisum sativum
avjpsR466Pisum sativum Cameor genome v1aPisum sativum
avjpsR472Pisum sativum Cameor genome v1aPisum sativum
avjpsR502Pisum sativum Cameor genome v1aPisum sativum
avjpvR452Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
avjvfhR457Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
avjvfhR491Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
avjpvR507Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
avjpvR509Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
avjvfhR515Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
avjvrvR345Vigna radiata cv. VC1973A genome v6.0Vigna radiata
avjvrvR398Vigna radiata cv. VC1973A genome v6.0Vigna radiata
avjvuR337Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
avjvuR388Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
avjvssR481Vicia sativa cv. Studenica genome v1.0Vicia sativa
avjvuR404Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
avjvssR550Vicia sativa cv. Studenica genome v1.0Vicia sativa
avjvssR571Vicia sativa cv. Studenica genome v1.0Vicia sativa
avjcarR417Cicer arietinum
avjcarR445Cicer arietinum
avjvumR379Vigna umbellata FF25 genome v1.0Vigna umbellata
avjccaR442Cajanus cajan cv. Asha genome v2.0Cajanus cajan
avjccaR450Cajanus cajan cv. Asha genome v2.0Cajanus cajan
avjvumR424Vigna umbellata FF25 genome v1.0Vigna umbellata
avjvumR435Vigna umbellata FF25 genome v1.0Vigna umbellata
avjccaR491Cajanus cajan cv. Asha genome v2.0Cajanus cajan
avjvvaR439Vicia villosa cv. AU Merit genome v1.0Vicia villosa
avjvvaR465Vicia villosa cv. AU Merit genome v1.0Vicia villosa
avjvvaR513Vicia villosa cv. AU Merit genome v1.0Vicia villosa
avjvasR379Vigna angularis cv. Shumari genome v1.a1Vigna angularis
avjvasR385Vigna angularis cv. Shumari genome v1.a1Vigna angularis
avjvasR410Vigna angularis cv. Shumari genome v1.a1Vigna angularis
avjvstR397Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
avjvstR409Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
avjvstR421Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
avjvunR282Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
avjpvfR450Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
avjvunR340Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
avjpvfR503Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
avjpvfR506Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris

Orthologs
Gene/TranscriptAssemblySpecies
Vigun01g129800.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
rna-XM_014639932.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
Vigun01g129800.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
PvulFLAVERTChr01.1001029Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
Vigst.04G185300.01Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
rna-KK1_009893Cajanus cajan Asha genome v1.0Cajanus cajan
Cc_v2.0_07466.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
Phvul.001G147600.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
Vum_04G02092.1Vigna umbellata FF25 genome v1.0Vigna umbellata

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
Vigan.04G294000.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Va03G068160Va03G068160_Jingnong6Vigna angularisgene


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Va03G068160.2:three_prime_UTR_1_Jingnong6Va03G068160.2:three_prime_UTR_1_Jingnong6Vigna angularisthree_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Va03G068160.2:exon_1_Jingnong6Va03G068160.2:exon_1_Jingnong6Vigna angularisexon
Va03G068160.2:exon_2_Jingnong6Va03G068160.2:exon_2_Jingnong6Vigna angularisexon
Va03G068160.2:exon_3_Jingnong6Va03G068160.2:exon_3_Jingnong6Vigna angularisexon
Va03G068160.2:exon_4_Jingnong6Va03G068160.2:exon_4_Jingnong6Vigna angularisexon
Va03G068160.2:exon_5_Jingnong6Va03G068160.2:exon_5_Jingnong6Vigna angularisexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Va03G068160.2_Jingnong6-cdsVa03G068160.2_Jingnong6-cds-Chr3_Jingnong6:41013054..41013506Vigna angularisCDS
Va03G068160.2_Jingnong6-cdsVa03G068160.2_Jingnong6-cds-Chr3_Jingnong6:41013852..41013917Vigna angularisCDS
Va03G068160.2_Jingnong6-cdsVa03G068160.2_Jingnong6-cds-Chr3_Jingnong6:41014013..41014078Vigna angularisCDS
Va03G068160.2_Jingnong6-cdsVa03G068160.2_Jingnong6-cds-Chr3_Jingnong6:41014286..41014321Vigna angularisCDS


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Va03G068160.2:five_prime_UTR_1_Jingnong6Va03G068160.2:five_prime_UTR_1_Jingnong6Vigna angularisfive_prime_UTR
Va03G068160.2:five_prime_UTR_2_Jingnong6Va03G068160.2:five_prime_UTR_2_Jingnong6Vigna angularisfive_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Va03G068160.2_Jingnong6Va03G068160.2_Jingnong6Vigna angularispolypeptide
Va03G068160.2_Jingnong6Va03G068160.2_Jingnong6-proteinVigna angularispolypeptide


Homology
[Close]
BLAST of Va03G068160.2 vs. UniProtKB/TrEMBL
Match: tr|A0A0S3RXS3|A0A0S3RXS3_PHAAN (K Homology domain-containing protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.04G294000 PE=4 SV=1)

HSP 1 Score: 429.483 bits (1103), Expect = 3.171e-150
Identity = 206/206 (100.00%), Postives = 206/206 (100.00%), Query Frame = 0 
Query:    1 MLSSMNMPDGVQRRRTALDELNMRCIFEENDVVCAEVRGFQHDGLHLQARSRKYGKLNRGQLLTVPPYLVKRQKQHFHHLEEFGVDLILGCNGFIWVGEHIEAKDDMVEDQVSQSDPPVLLHNSASLEEQEKNYTILEIRKYICRAANAVRVLSILGFNVTLEIIKGIIDLSLSMNLDIHEMLGSEFCVLVAEKEAERRSSNKKKR 206
            MLSSMNMPDGVQRRRTALDELNMRCIFEENDVVCAEVRGFQHDGLHLQARSRKYGKLNRGQLLTVPPYLVKRQKQHFHHLEEFGVDLILGCNGFIWVGEHIEAKDDMVEDQVSQSDPPVLLHNSASLEEQEKNYTILEIRKYICRAANAVRVLSILGFNVTLEIIKGIIDLSLSMNLDIHEMLGSEFCVLVAEKEAERRSSNKKKR
Sbjct:  120 MLSSMNMPDGVQRRRTALDELNMRCIFEENDVVCAEVRGFQHDGLHLQARSRKYGKLNRGQLLTVPPYLVKRQKQHFHHLEEFGVDLILGCNGFIWVGEHIEAKDDMVEDQVSQSDPPVLLHNSASLEEQEKNYTILEIRKYICRAANAVRVLSILGFNVTLEIIKGIIDLSLSMNLDIHEMLGSEFCVLVAEKEAERRSSNKKKR 325
[Close]
BLAST of Va03G068160.2 vs. UniProtKB/TrEMBL
Match: tr|A0A0L9U890|A0A0L9U890_PHAAN (Exosome complex component RRP4-like protein OS=Phaseolus angularis OX=3914 GN=HKW66_Vig0050180 PE=4 SV=1)

HSP 1 Score: 429.483 bits (1103), Expect = 3.171e-150
Identity = 206/206 (100.00%), Postives = 206/206 (100.00%), Query Frame = 0 
Query:    1 MLSSMNMPDGVQRRRTALDELNMRCIFEENDVVCAEVRGFQHDGLHLQARSRKYGKLNRGQLLTVPPYLVKRQKQHFHHLEEFGVDLILGCNGFIWVGEHIEAKDDMVEDQVSQSDPPVLLHNSASLEEQEKNYTILEIRKYICRAANAVRVLSILGFNVTLEIIKGIIDLSLSMNLDIHEMLGSEFCVLVAEKEAERRSSNKKKR 206
            MLSSMNMPDGVQRRRTALDELNMRCIFEENDVVCAEVRGFQHDGLHLQARSRKYGKLNRGQLLTVPPYLVKRQKQHFHHLEEFGVDLILGCNGFIWVGEHIEAKDDMVEDQVSQSDPPVLLHNSASLEEQEKNYTILEIRKYICRAANAVRVLSILGFNVTLEIIKGIIDLSLSMNLDIHEMLGSEFCVLVAEKEAERRSSNKKKR
Sbjct:  120 MLSSMNMPDGVQRRRTALDELNMRCIFEENDVVCAEVRGFQHDGLHLQARSRKYGKLNRGQLLTVPPYLVKRQKQHFHHLEEFGVDLILGCNGFIWVGEHIEAKDDMVEDQVSQSDPPVLLHNSASLEEQEKNYTILEIRKYICRAANAVRVLSILGFNVTLEIIKGIIDLSLSMNLDIHEMLGSEFCVLVAEKEAERRSSNKKKR 325
[Close]
BLAST of Va03G068160.2 vs. UniProtKB/TrEMBL
Match: tr|A0A1S3TNQ7|A0A1S3TNQ7_VIGRR (Exosome complex component RRP4 homolog OS=Vigna radiata var. radiata OX=3916 GN=LOC106757294 PE=4 SV=1)

HSP 1 Score: 423.705 bits (1088), Expect = 5.588e-148
Identity = 203/206 (98.54%), Postives = 205/206 (99.51%), Query Frame = 0 
Query:    1 MLSSMNMPDGVQRRRTALDELNMRCIFEENDVVCAEVRGFQHDGLHLQARSRKYGKLNRGQLLTVPPYLVKRQKQHFHHLEEFGVDLILGCNGFIWVGEHIEAKDDMVEDQVSQSDPPVLLHNSASLEEQEKNYTILEIRKYICRAANAVRVLSILGFNVTLEIIKGIIDLSLSMNLDIHEMLGSEFCVLVAEKEAERRSSNKKKR 206
            MLSSMNMPDGVQRRRTALDELNMRCIFEENDVVCAEVRGFQHDGLHLQARSRKYGKLNRGQLLTVPPYLVKRQKQHFHHLEEFGVDLILGCNGFIWVGEHIEAKDDMVEDQVSQSDP VLLHNS+SLEEQEKNYTILEIRKYICRAANAVRVLSILGFN+TLEIIKGIIDLSLSMNLDIHEMLGSEFCVLVAEKEAERRSSNKKKR
Sbjct:  120 MLSSMNMPDGVQRRRTALDELNMRCIFEENDVVCAEVRGFQHDGLHLQARSRKYGKLNRGQLLTVPPYLVKRQKQHFHHLEEFGVDLILGCNGFIWVGEHIEAKDDMVEDQVSQSDPQVLLHNSSSLEEQEKNYTILEIRKYICRAANAVRVLSILGFNITLEIIKGIIDLSLSMNLDIHEMLGSEFCVLVAEKEAERRSSNKKKR 325
[Close]
BLAST of Va03G068160.2 vs. UniProtKB/TrEMBL
Match: tr|A0A4D6MCR4|A0A4D6MCR4_VIGUN (Exosome complex component RRP4 OS=Vigna unguiculata OX=3917 GN=DEO72_LG6g2294 PE=4 SV=1)

HSP 1 Score: 418.698 bits (1075), Expect = 5.447e-146
Identity = 200/206 (97.09%), Postives = 203/206 (98.54%), Query Frame = 0 
Query:    1 MLSSMNMPDGVQRRRTALDELNMRCIFEENDVVCAEVRGFQHDGLHLQARSRKYGKLNRGQLLTVPPYLVKRQKQHFHHLEEFGVDLILGCNGFIWVGEHIEAKDDMVEDQVSQSDPPVLLHNSASLEEQEKNYTILEIRKYICRAANAVRVLSILGFNVTLEIIKGIIDLSLSMNLDIHEMLGSEFCVLVAEKEAERRSSNKKKR 206
            MLSSMNMPDGVQRRRTALDELNMRCIFEENDVVCAEVRGFQHDGLHLQARSRKYGKL RGQLLTVPPYLVKRQKQHFHHLEEFG+DLILGCNGFIWVGEHIEAKDDMVEDQVSQSDP VLLHNSASLEEQE+NYTILE RKYICRAANAVRVLSILGFN+TLEIIKGIIDLSLSMNLDIHEMLGSEFCVLVAEKEAERRSSNKKKR
Sbjct:  120 MLSSMNMPDGVQRRRTALDELNMRCIFEENDVVCAEVRGFQHDGLHLQARSRKYGKLYRGQLLTVPPYLVKRQKQHFHHLEEFGIDLILGCNGFIWVGEHIEAKDDMVEDQVSQSDPQVLLHNSASLEEQERNYTILETRKYICRAANAVRVLSILGFNITLEIIKGIIDLSLSMNLDIHEMLGSEFCVLVAEKEAERRSSNKKKR 325
[Close]
BLAST of Va03G068160.2 vs. UniProtKB/TrEMBL
Match: tr|V7CW81|V7CW81_PHAVU (RNA-binding domain-containing protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_001G147600g PE=4 SV=1)

HSP 1 Score: 414.846 bits (1065), Expect = 2.092e-144
Identity = 197/206 (95.63%), Postives = 202/206 (98.06%), Query Frame = 0 
Query:    1 MLSSMNMPDGVQRRRTALDELNMRCIFEENDVVCAEVRGFQHDGLHLQARSRKYGKLNRGQLLTVPPYLVKRQKQHFHHLEEFGVDLILGCNGFIWVGEHIEAKDDMVEDQVSQSDPPVLLHNSASLEEQEKNYTILEIRKYICRAANAVRVLSILGFNVTLEIIKGIIDLSLSMNLDIHEMLGSEFCVLVAEKEAERRSSNKKKR 206
            MLSSMNMPDGVQRRRTALDELNMRCIFEENDVVCAEVRGFQHDGLHLQARSRKYGKLNRGQLL+VPPYLVKRQKQHFHHLEEFG+DLI+GCNGFIWVGEHIEAKDDMVEDQVSQSDP VLLHNS SLEEQE+NYTILE RKYICRAANAVRVLSIL FN+TLEIIKGIIDLSLSMNLDIHEMLGSEFCVLVAEKEAERRSSNKKKR
Sbjct:  120 MLSSMNMPDGVQRRRTALDELNMRCIFEENDVVCAEVRGFQHDGLHLQARSRKYGKLNRGQLLSVPPYLVKRQKQHFHHLEEFGIDLIIGCNGFIWVGEHIEAKDDMVEDQVSQSDPQVLLHNSVSLEEQERNYTILETRKYICRAANAVRVLSILSFNMTLEIIKGIIDLSLSMNLDIHEMLGSEFCVLVAEKEAERRSSNKKKR 325
[Close]
BLAST of Va03G068160.2 vs. UniProtKB/TrEMBL
Match: tr|A0A151TUE4|A0A151TUE4_CAJCA (Exosome complex exonuclease RRP4 OS=Cajanus cajan OX=3821 GN=KK1_009893 PE=4 SV=1)

HSP 1 Score: 394.43 bits (1012), Expect = 2.818e-136
Identity = 189/208 (90.87%), Postives = 197/208 (94.71%), Query Frame = 0 
Query:    1 MLSSMNMPDGVQRRRTALDELNMRCIFEENDVVCAEVRGFQHDGLHLQARSRKYGKLNRGQLLTVPPYLVKRQKQHFHHLEEFGVDLILGCNGFIWVGEHIEAKDDMVEDQVSQSDPPVLL--HNSASLEEQEKNYTILEIRKYICRAANAVRVLSILGFNVTLEIIKGIIDLSLSMNLDIHEMLGSEFCVLVAEKEAERRSSNKKKR 206
            MLSSMNMPDGVQRRRTA+DELNMRCIFEENDVVCAEVRGFQHDGLHLQARSRKYGKL RGQLL V PYLVKRQKQHFHHLEEFG+DLILGCNGFIWVGEHIEAKDDMVEDQV+QSDP VLL   NS SLEEQEK+YT LE RKYICRAANA+RVLS LGFN+TLEIIKGIIDLSLS+NLDIH+MLGSEFCVLVAEKEAERRSSNKKKR
Sbjct:  124 MLSSMNMPDGVQRRRTAVDELNMRCIFEENDVVCAEVRGFQHDGLHLQARSRKYGKLTRGQLLRVSPYLVKRQKQHFHHLEEFGIDLILGCNGFIWVGEHIEAKDDMVEDQVNQSDPQVLLPSKNSVSLEEQEKSYTTLETRKYICRAANAIRVLSTLGFNITLEIIKGIIDLSLSLNLDIHDMLGSEFCVLVAEKEAERRSSNKKKR 331
[Close]
BLAST of Va03G068160.2 vs. UniProtKB/TrEMBL
Match: tr|A0A8B8L8N9|A0A8B8L8N9_ABRPR (Exosome complex component RRP4 homolog OS=Abrus precatorius OX=3816 GN=LOC113863265 PE=4 SV=1)

HSP 1 Score: 393.66 bits (1010), Expect = 3.885e-136
Identity = 188/208 (90.38%), Postives = 198/208 (95.19%), Query Frame = 0 
Query:    1 MLSSMNMPDGVQRRRTALDELNMRCIFEENDVVCAEVRGFQHDGLHLQARSRKYGKLNRGQLLTVPPYLVKRQKQHFHHLEEFGVDLILGCNGFIWVGEHIEAKDDMVEDQVSQSDPPVLL--HNSASLEEQEKNYTILEIRKYICRAANAVRVLSILGFNVTLEIIKGIIDLSLSMNLDIHEMLGSEFCVLVAEKEAERRSSNKKKR 206
            MLSSMNMPDGVQRRRTA+DELNMRCIFEE DVVCAEVRGFQHDGLHLQARS+KYGKLNRGQLLTVPPYLVKRQKQHFHHLE++G+DLILGCNGFIWVGEHIEAKDD+VEDQV+QSD  VLL   NS+SLEEQEKNYT LE RKYICRAANAVRVLS LGFN+TLEIIKGIIDLSLS+NLDIHEMLGSEFCVLVAEKE ERRSSNKKKR
Sbjct:  120 MLSSMNMPDGVQRRRTAVDELNMRCIFEEKDVVCAEVRGFQHDGLHLQARSQKYGKLNRGQLLTVPPYLVKRQKQHFHHLEQYGIDLILGCNGFIWVGEHIEAKDDLVEDQVNQSDHQVLLPNKNSSSLEEQEKNYTTLETRKYICRAANAVRVLSTLGFNITLEIIKGIIDLSLSLNLDIHEMLGSEFCVLVAEKETERRSSNKKKR 327
[Close]
BLAST of Va03G068160.2 vs. UniProtKB/TrEMBL
Match: tr|I1N9E1|I1N9E1_SOYBN (RNA-binding domain-containing protein OS=Glycine max OX=3847 GN=100776358 PE=4 SV=2)

HSP 1 Score: 392.119 bits (1006), Expect = 2.168e-135
Identity = 188/208 (90.38%), Postives = 196/208 (94.23%), Query Frame = 0 
Query:    1 MLSSMNMPDGVQRRRTALDELNMRCIFEENDVVCAEVRGFQHDGLHLQARSRKYGKLNRGQLLTVPPYLVKRQKQHFHHLEEFGVDLILGCNGFIWVGEHIEAKDDMVEDQVSQSDPPVLL--HNSASLEEQEKNYTILEIRKYICRAANAVRVLSILGFNVTLEIIKGIIDLSLSMNLDIHEMLGSEFCVLVAEKEAERRSSNKKKR 206
            +LSSMNMPDGVQRRRTA+DELNMRCIFEENDVVCAEVRGFQHDGLHLQARSRKYGKLNRGQLLTVPPYLVKRQKQHFHHLEEFG+DLILGCNGFIWVGEH+EAKDDM+EDQVSQSD  VL    N  SLEEQEKNYTILE RKYI RAANAVRVLS LGFN+TLEIIKGIIDLSLSMNLDIH+MLGSEFCVLVAEKEAERRSS KK+R
Sbjct:  120 LLSSMNMPDGVQRRRTAVDELNMRCIFEENDVVCAEVRGFQHDGLHLQARSRKYGKLNRGQLLTVPPYLVKRQKQHFHHLEEFGIDLILGCNGFIWVGEHVEAKDDMIEDQVSQSDSQVLFPNKNCVSLEEQEKNYTILETRKYISRAANAVRVLSTLGFNITLEIIKGIIDLSLSMNLDIHDMLGSEFCVLVAEKEAERRSSMKKRR 327
[Close]
BLAST of Va03G068160.2 vs. UniProtKB/TrEMBL
Match: tr|A0A0B2SKI4|A0A0B2SKI4_GLYSO (Exosome complex component RRP4 OS=Glycine soja OX=3848 GN=D0Y65_051561 PE=4 SV=1)

HSP 1 Score: 392.119 bits (1006), Expect = 2.168e-135
Identity = 188/208 (90.38%), Postives = 196/208 (94.23%), Query Frame = 0 
Query:    1 MLSSMNMPDGVQRRRTALDELNMRCIFEENDVVCAEVRGFQHDGLHLQARSRKYGKLNRGQLLTVPPYLVKRQKQHFHHLEEFGVDLILGCNGFIWVGEHIEAKDDMVEDQVSQSDPPVLL--HNSASLEEQEKNYTILEIRKYICRAANAVRVLSILGFNVTLEIIKGIIDLSLSMNLDIHEMLGSEFCVLVAEKEAERRSSNKKKR 206
            +LSSMNMPDGVQRRRTA+DELNMRCIFEENDVVCAEVRGFQHDGLHLQARSRKYGKLNRGQLLTVPPYLVKRQKQHFHHLEEFG+DLILGCNGFIWVGEH+EAKDDM+EDQVSQSD  VL    N  SLEEQEKNYTILE RKYI RAANAVRVLS LGFN+TLEIIKGIIDLSLSMNLDIH+MLGSEFCVLVAEKEAERRSS KK+R
Sbjct:  120 LLSSMNMPDGVQRRRTAVDELNMRCIFEENDVVCAEVRGFQHDGLHLQARSRKYGKLNRGQLLTVPPYLVKRQKQHFHHLEEFGIDLILGCNGFIWVGEHVEAKDDMIEDQVSQSDSQVLFPNKNCVSLEEQEKNYTILETRKYISRAANAVRVLSTLGFNITLEIIKGIIDLSLSMNLDIHDMLGSEFCVLVAEKEAERRSSMKKRR 327
[Close]
BLAST of Va03G068160.2 vs. UniProtKB/TrEMBL
Match: tr|A0A371FTU5|A0A371FTU5_MUCPR (Exosome complex component RRP4-like protein OS=Mucuna pruriens OX=157652 GN=RRP4 PE=4 SV=1)

HSP 1 Score: 384.415 bits (986), Expect = 2.421e-132
Identity = 183/208 (87.98%), Postives = 195/208 (93.75%), Query Frame = 0 
Query:    1 MLSSMNMPDGVQRRRTALDELNMRCIFEENDVVCAEVRGFQHDGLHLQARSRKYGKLNRGQLLTVPPYLVKRQKQHFHHLEEFGVDLILGCNGFIWVGEHIEAKDDMVEDQVSQSDPPVL--LHNSASLEEQEKNYTILEIRKYICRAANAVRVLSILGFNVTLEIIKGIIDLSLSMNLDIHEMLGSEFCVLVAEKEAERRSSNKKKR 206
            MLSSMNMPDGVQRRRT++DELNMRCIFEE DVVCAEVRGFQHDGLHLQARS KYGKL+RGQLLT+PPYLVKRQKQHFHHLEEFG+DL+LGCNGFIWVGEH EAKDDM+EDQV+QSD  VL    N ASLEEQEKNYT L+ RKYICRAANA+RVLS LGFN+TLEIIKGIIDLSLSMNLDIHEMLGSEFCVLVAEKEAERRSS+KKKR
Sbjct:  120 MLSSMNMPDGVQRRRTSVDELNMRCIFEETDVVCAEVRGFQHDGLHLQARSWKYGKLSRGQLLTIPPYLVKRQKQHFHHLEEFGIDLVLGCNGFIWVGEHTEAKDDMLEDQVNQSDLQVLSPSKNCASLEEQEKNYTTLDTRKYICRAANAIRVLSTLGFNITLEIIKGIIDLSLSMNLDIHEMLGSEFCVLVAEKEAERRSSSKKKR 327
[Close]
BLAST of Va03G068160.2 vs. UniProtKB/Swiss-Prot
Match: Exosome (complex component RRP4 homolog OS=Arabidopsis thaliana OX=3702 GN=RRP4 PE=1 SV=1)

HSP 1 Score: 265.774 bits (678), Expect = 2.228e-88
Identity = 132/206 (64.08%), Postives = 161/206 (78.16%), Query Frame = 0 
Query:    1 MLSSMNMPDGVQRRRTALDELNMRCIFEENDVVCAEVRGFQHDG-LHLQARSRKYGKLNRGQLLTVPPYLVKRQKQHFHHLEEFGVDLILGCNGFIWVGEHIEAKDDMVEDQVSQSDPPVLLHNSASLEEQEKNYTILEIRKYICRAANAVRVLSILGFNVTLEIIKGIIDLSLSMNLDIHEMLGSEFCVLVAEKEAERRSSNKKK 205
            MLSSMNMPDG+QRRRT++DELNMR IF E+DVVCAEVR FQHDG L LQARS+KYGKL +GQLL V PYLVKR K HFH++E  G+DLI+GCNGFIWVGEH+E +D M  D   Q D  ++   S+S   +E+++  LE R+ ICR  NA+RVLS LGF VTLE+I   ++LS S N+DIH+MLGSEF V+VAE EAERR + +KK
Sbjct:  122 MLSSMNMPDGIQRRRTSVDELNMRNIFVEHDVVCAEVRNFQHDGSLQLQARSQKYGKLEKGQLLKVDPYLVKRSKHHFHYVESLGIDLIIGCNGFIWVGEHVEVRDPMAID--DQKDEEMI---SSSSTGKEQSHIPLETRQTICRIGNAIRVLSNLGFTVTLEVIMETVNLSNSKNIDIHDMLGSEFHVVVAENEAERRRTKRKK 322
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BLAST of Va03G068160.2 vs. UniProtKB/Swiss-Prot
Match: Exosome (complex component rrp4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rrp4 PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 3.025e-28
Identity = 74/190 (38.95%), Postives = 103/190 (54.21%), Query Frame = 0 
Query:    1 MLSSMNMPDGVQRRRTALDELNMRCIFEENDVVCAEVRGFQHDG-LHLQARSRKYGKLNRGQLLTVPPYLVKRQKQHFHHLEEFGVDLILGCNGFIWVGEHIEAKDDMV-----EDQVSQSDPPVLLHNSASLEEQEKNYTILEI-RKYICRAANAVRVL-----SILGFNVTLEIIKGIIDLSLSMNLD 178
            MLSS+N+P G+QRR+   DEL MR  F+E D++ AEV+ +  DG + +  RS KYGKL  G  L VPP LV R K H + L   GVD+IL  NG++WV +H E +   V     E++ S+S    +  N     ++   YT L I R  IC    A R L     SI  F  +  +   + DL++  N+D
Sbjct:  140 MLSSINLPGGIQRRKLETDELQMRSFFQEGDLLVAEVQQYFSDGSVSIHTRSLKYGKLRNGVFLKVPPALVVRSKSHAYALAG-GVDIILSVNGYVWVSKHNENQHSSVSITRLEEEASES----IYSNE---NDEIDGYTRLNISRVSICIKGLASRSLPLTQASITNFYESSLVFSNLQDLTVPKNMD 321
[Close]
BLAST of Va03G068160.2 vs. UniProtKB/Swiss-Prot
Match: Exosome (complex component RRP4 OS=Bos taurus OX=9913 GN=EXOSC2 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 2.805e-27
Identity = 59/118 (50.00%), Postives = 74/118 (62.71%), Query Frame = 0 
Query:    1 MLSSMNMPDGVQRRRTALDELNMRCIFEENDVVCAEVRGFQHDG-LHLQARSRKYGKLNRGQLLTVPPYLVKRQKQHFHHLEEFGVDLILGCNGFIWVGEHIEAKDDMVEDQVSQSDP 117
            +LSSMN+P G  RRR+A DEL MR   +E D++ AEV+    DG + L  RS KYGKL +G L+ V P LVKRQK HFH L   G  +ILG NGFIWV    E K+D     ++  +P
Sbjct:  109 LLSSMNLPGGELRRRSAEDELAMRGFLQEGDLISAEVQAVFSDGAVSLHTRSLKYGKLGQGVLVQVSPSLVKRQKTHFHDL-PCGASVILGNNGFIWVYPTPEHKEDDAGGFIANLEP 225
[Close]
BLAST of Va03G068160.2 vs. UniProtKB/Swiss-Prot
Match: Exosome (complex component RRP4 OS=Mus musculus OX=10090 GN=Exosc2 PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 3.318e-27
Identity = 59/121 (48.76%), Postives = 75/121 (61.98%), Query Frame = 0 
Query:    1 MLSSMNMPDGVQRRRTALDELNMRCIFEENDVVCAEVRGFQHDG-LHLQARSRKYGKLNRGQLLTVPPYLVKRQKQHFHHLEEFGVDLILGCNGFIWVGEHIEAKDDMVEDQVSQSDPPVL 120
            +LSSMN+P G  RRR+A DEL MR   +E D++ AEV+    DG + L  RS KYGKL +G L+ V P LVKRQK HFH L   G  +ILG NGFIW+    E KD+     ++  +P  L
Sbjct:  109 LLSSMNLPGGELRRRSAEDELAMRGFLQEGDLISAEVQAVFSDGAVSLHTRSLKYGKLGQGVLVQVSPSLVKRQKTHFHDL-PCGASVILGNNGFIWIYPTPEHKDEDAGGFIANLEPVAL 228
[Close]
BLAST of Va03G068160.2 vs. UniProtKB/Swiss-Prot
Match: Exosome (complex component RRP4 OS=Homo sapiens OX=9606 GN=EXOSC2 PE=1 SV=2)

HSP 1 Score: 105.916 bits (263), Expect = 1.602e-26
Identity = 57/118 (48.31%), Postives = 74/118 (62.71%), Query Frame = 0 
Query:    1 MLSSMNMPDGVQRRRTALDELNMRCIFEENDVVCAEVRGFQHDG-LHLQARSRKYGKLNRGQLLTVPPYLVKRQKQHFHHLEEFGVDLILGCNGFIWVGEHIEAKDDMVEDQVSQSDP 117
            +LSSMN+P G  RRR+A DEL MR   +E D++ AEV+    DG + L  RS KYGKL +G L+ V P LVKRQK HFH L   G  +ILG NGFIW+    E K++     ++  +P
Sbjct:  109 LLSSMNLPGGELRRRSAEDELAMRGFLQEGDLISAEVQAVFSDGAVSLHTRSLKYGKLGQGVLVQVSPSLVKRQKTHFHDL-PCGASVILGNNGFIWIYPTPEHKEEEAGGFIANLEP 225
[Close]
BLAST of Va03G068160.2 vs. UniProtKB/Swiss-Prot
Match: Exosome (complex component RRP4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=RRP4 PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.393e-23
Identity = 72/222 (32.43%), Postives = 112/222 (50.45%), Query Frame = 0 
Query:    1 MLSSMNMPDGVQRRRTALDELNMRCIFEENDVVCAEVRG-FQHDGLHLQARSRKYGKLNRGQLLTVPPYLVKRQKQHFHHLEEFGVDLILGCNGFIWVGEHIEAKDDMVEDQVS-------QSDPP---VLLHNSASLEEQEKNYTILE----------IRKYICRAANAVRVLSILGFNVTLEIIKGIIDLSLS-------MNLDIHEMLGSEFCVLVAEK 194
            ML S+N+P G+ RR++  DEL MR   +E D++ AEV+  FQ     L  RS KYGKL  G    VP  L+ R K H H+L    + ++LG NG+IW+ +   ++ D+  D  S       +S  P   V L+ S +  E+E ++ I            IR+ ICR AN ++ L+     +T + I    + S+        +  ++ E +GS+  +L AEK
Sbjct:  137 MLGSVNLPGGILRRKSESDELQMRSFLKEGDLLNAEVQSLFQDGSASLHTRSLKYGKLRNGMFCQVPSSLIVRAKNHTHNLPG-NITVVLGVNGYIWLRK--TSQMDLARDTPSANNSSSIKSTGPTGAVSLNPSITRLEEESSWQIYSDENDPSISNNIRQAICRYANVIKALAFCEIGITQQRIVSAYEASMVYSNVGELIEKNVMESIGSD--ILTAEK 353
[Close]
BLAST of Va03G068160.2 vs. UniProtKB/Swiss-Prot
Match: Exosome (complex component RRP4 homolog OS=Caenorhabditis elegans OX=6239 GN=exos-2 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 6.223e-22
Identity = 45/97 (46.39%), Postives = 65/97 (67.01%), Query Frame = 0 
Query:    2 LSSMNMPDGVQRRRTALDELNMRCIFEENDVVCAEVRGFQHDG-LHLQARSRKYGKLNRGQLLTVPPYLVKRQKQHFHHLEEFGVDLILGCNGFIWV 97
            L S+ +P G  RR+   DE  M    +  +++CAEV+  QHDG L L  R+ KYGKL +G L+ VPP+L+K+ K+HFH L  +G+ +I+GCNG +WV
Sbjct:  116 LGSVLLPGGDFRRKDVEDEEKMSEFLKNGELICAEVQQVQHDGTLMLHTRNNKYGKLQQGILIKVPPHLIKKSKKHFHTL-PYGMAVIIGCNGSVWV 211
[Close]
BLAST of Va03G068160.2 vs. Araport11
Match: | (Symbols: SOP2, RRP4, ATRRP4 | ribosomal RNA processing 4, SUPPRESSOR OF PAS2 2 | chr1:824653-826179 FORWARD LENGTH=322)

HSP 1 Score: 256.914 bits (655), Expect = 7.721e-86
Identity = 128/198 (64.65%), Postives = 155/198 (78.28%), Query Frame = 0 
Query:    1 MLSSMNMPDGVQRRRTALDELNMRCIFEENDVVCAEVRGFQHDG-LHLQARSRKYGKLNRGQLLTVPPYLVKRQKQHFHHLEEFGVDLILGCNGFIWVGEHIEAKDDMVEDQVSQSDPPVLLHNSASLEEQEKNYTILEIRKYICRAANAVRVLSILGFNVTLEIIKGIIDLSLSMNLDIHEMLGSEFCVLVAEKEAE 197
            MLSSMNMPDG+QRRRT++DELNMR IF E+DVVCAEVR FQHDG L LQARS+KYGKL +GQLL V PYLVKR K HFH++E  G+DLI+GCNGFIWVGEH+E +D M  D   Q D  ++   S+S   +E+++  LE R+ ICR  NA+RVLS LGF VTLE+I   ++LS S N+DIH+MLGSEF V+VAE EAE
Sbjct:  122 MLSSMNMPDGIQRRRTSVDELNMRNIFVEHDVVCAEVRNFQHDGSLQLQARSQKYGKLEKGQLLKVDPYLVKRSKHHFHYVESLGIDLIIGCNGFIWVGEHVEVRDPMAID--DQKDEEMI---SSSSTGKEQSHIPLETRQTICRIGNAIRVLSNLGFTVTLEVIMETVNLSNSKNIDIHDMLGSEFHVVVAENEAE 314
The following BLAST results are available for this feature:
BLAST of Va03G068160.2 vs. UniProtKB/TrEMBL
Analysis Date: 2024-05-23 (Blastp of Vigna angularis cv. Jingnong6 v1.7.1 proteins vs UniProt TrEMBL)
Total hits: 10
Match NameE-valueIdentityDescription
tr|A0A0S3RXS3|A0A0S3RXS3_PHAAN3.171e-150100.00K Homology domain-containing protein OS=Vigna angu... [more]
tr|A0A0L9U890|A0A0L9U890_PHAAN3.171e-150100.00Exosome complex component RRP4-like protein OS=Pha... [more]
tr|A0A1S3TNQ7|A0A1S3TNQ7_VIGRR5.588e-14898.54Exosome complex component RRP4 homolog OS=Vigna ra... [more]
tr|A0A4D6MCR4|A0A4D6MCR4_VIGUN5.447e-14697.09Exosome complex component RRP4 OS=Vigna unguiculat... [more]
tr|V7CW81|V7CW81_PHAVU2.092e-14495.63RNA-binding domain-containing protein OS=Phaseolus... [more]
tr|A0A151TUE4|A0A151TUE4_CAJCA2.818e-13690.87Exosome complex exonuclease RRP4 OS=Cajanus cajan ... [more]
tr|A0A8B8L8N9|A0A8B8L8N9_ABRPR3.885e-13690.38Exosome complex component RRP4 homolog OS=Abrus pr... [more]
tr|I1N9E1|I1N9E1_SOYBN2.168e-13590.38RNA-binding domain-containing protein OS=Glycine m... [more]
tr|A0A0B2SKI4|A0A0B2SKI4_GLYSO2.168e-13590.38Exosome complex component RRP4 OS=Glycine soja OX=... [more]
tr|A0A371FTU5|A0A371FTU5_MUCPR2.421e-13287.98Exosome complex component RRP4-like protein OS=Muc... [more]
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BLAST of Va03G068160.2 vs. UniProtKB/Swiss-Prot
Analysis Date: 2024-05-23 (Blastp of Vigna angularis cv. Jingnong6 v1.7.1 proteins vs UniProt Swissprot)
Total hits: 7
Match NameE-valueIdentityDescription
Exosome2.228e-8864.08complex component RRP4 homolog OS=Arabidopsis thal... [more]
Exosome3.025e-2838.95complex component rrp4 OS=Schizosaccharomyces pomb... [more]
Exosome2.805e-2750.00complex component RRP4 OS=Bos taurus OX=9913 GN=EX... [more]
Exosome3.318e-2748.76complex component RRP4 OS=Mus musculus OX=10090 GN... [more]
Exosome1.602e-2648.31complex component RRP4 OS=Homo sapiens OX=9606 GN=... [more]
Exosome1.393e-2332.43complex component RRP4 OS=Saccharomyces cerevisiae... [more]
Exosome6.223e-2246.39complex component RRP4 homolog OS=Caenorhabditis e... [more]
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BLAST of Va03G068160.2 vs. Araport11
Analysis Date: 2024-05-23 (Blastp of Vigna angularis cv. Jingnong6 v1.7.1 proteins vs arabidopsis Araport11)
Total hits: 1
Match NameE-valueIdentityDescription
|7.721e-8664.65Symbols: SOP2, RRP4, ATRRP4 | ribosomal RNA proces... [more]
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InterPro
Analysis Name: InterProScan Analysis for Vigna angularis cv. Jingnong6 genome v1.7.1
Date Performed: 2024-05-23
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004088K Homology domain, type 1PFAMPF15985KH_6coord: 60..100
e-value: 5.8E-10
score: 50.7
IPR048565RRP4, S1 domainPFAMPF21266RRP4_S1coord: 1..38
e-value: 5.6E-10
score: 50.6
IPR026699Exosome complex RNA-binding protein 1/RRP40/RRP4PANTHERPTHR21321PNAS-3 RELATEDcoord: 2..175
NoneNo IPR availableCDDcd22525KH-I_Rrp4_eukarcoord: 60..196
e-value: 2.65103E-37
score: 124.304
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 2..57
IPR036612K Homology domain, type 1 superfamilySUPERFAMILY54791Eukaryotic type KH-domain (KH-domain type I)coord: 60..201

Sequences
The following sequences are available for this feature:

mRNA sequence

>Va03G068160.2_Jingnong6 ID=Va03G068160.2_Jingnong6; Name=Va03G068160.2; organism=Vigna angularis; type=mRNA; length=621bp
ATGCTTTCTTCCATGAATATGCCTGATGGGGTCCAGAGGCGGAGGACAGC
GCTGGATGAGCTAAACATGCGTTGCATTTTTGAGGAGAATGATGTTGTCT
GTGCTGAAGTTCGGGGTTTCCAGCATGACGGCTTACACCTTCAAGCTAGG
AGTCGGAAATATGGAAAGCTTAATAGAGGTCAGCTGCTTACAGTCCCACC
TTATCTAGTGAAGAGACAGAAACAACATTTCCATCATCTGGAGGAGTTTG
GCGTCGATTTGATACTTGGCTGTAACGGATTCATATGGGTTGGGGAACAT
ATTGAAGCCAAAGATGACATGGTAGAAGATCAGGTGAGCCAATCCGATCC
ACCAGTTTTACTGCATAACAGTGCAAGTCTTGAAGAACAAGAAAAAAATT
ATACGATATTGGAGATCAGAAAATATATTTGCAGAGCAGCTAATGCTGTT
AGAGTTCTATCAATCTTAGGCTTCAATGTTACATTGGAAATAATCAAGGG
AATTATTGATCTAAGCCTATCTATGAATCTTGATATACATGAGATGCTTG
GTTCTGAATTCTGTGTTCTGGTTGCTGAAAAAGAGGCAGAAAGGAGGAGC
TCAAATAAAAAGAAGCGGTAG
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protein sequence of Va03G068160.2_Jingnong6

>Va03G068160.2_Jingnong6 ID=Va03G068160.2_Jingnong6; Name=Va03G068160.2_Jingnong6; organism=Vigna angularis; type=polypeptide; length=206bp
MLSSMNMPDGVQRRRTALDELNMRCIFEENDVVCAEVRGFQHDGLHLQAR
SRKYGKLNRGQLLTVPPYLVKRQKQHFHHLEEFGVDLILGCNGFIWVGEH
IEAKDDMVEDQVSQSDPPVLLHNSASLEEQEKNYTILEIRKYICRAANAV
RVLSILGFNVTLEIIKGIIDLSLSMNLDIHEMLGSEFCVLVAEKEAERRS
SNKKKR
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mRNA from alignment at Chr3:41012780..41014953-

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Va03G068160.2_Jingnong6 ID=Va03G068160.2_Jingnong6; Name=Va03G068160.2; organism=Vigna angularis; type=mRNA; length=2174bp; location=Sequence derived from: Chr3:41012780..41014953- (Vigna angularis
CCAAATTTCAAAGTTTGAAAGAGGGAATGATGGTGGAAGAGTGAGGTTCG
AGCTTAGGGTTTCTTCTTGCATTGTTCAGTGCTTGCAGAGAGAGATATCC
TAATGAGAGGAATACAGTTACCGTTAAGCCAAACTCAGAAGGTTCGTCTT
CAGAAGACTCTTGAACAGTTAGAATCTCTCTCGTCGAAGGTCAATTCCGA
TGCTTCCGTCATCATCGCTGATTCCATTCCCGTCAACCACGAAGACGGAG
TCCTCAAGGGACACGGAACCGCCGATCTCAACGGCGAAGTCGTTGCCACC
GTCTGCGGCGTCGTTGAGCGCGTGAACAAACTTGTCTACGTCCGCGCTTT
ACGCTCCAGGTATAATATTTCTTCTTAACTTGTCAACATTTTTCTGTTGA
TATCTTTGTTAACGGAGTGATGTGATAACTCGTAGGTATAAGCCAGAGGT
TGGTGACATTGTTATAGGACGTGTTGCTGAGGTACATATAAAAAAGATTT
TCTTGGAAATTTGTATTTTGTGCTTGTTGCTGTTCTCTCACTATTTTGAT
TTTAATGGCTGTTATGGCTGTTATGTAGGTTGCTCAGAAGCGCTGGAGAC
TGGATATAAATTTCAATCAGGATGCAGTTTTGATGCTTTCTTCCATGAAT
ATGCCTGATGGGGTCCAGGTATTCATAACGCTTTTTTCGGGGATATATAT
TGATATGGTTTATGTGAAAACATCTGTATTTTGTATAGCTCATATAACTC
TCTTCAGAAAATTTAACTTGTGCCTTTTTAAAATAAAAGGATGTTTTTAG
TTAAGCGAAAATGTGTTTAATTTTATAAATGAAGCTGGAAACCCTCTCAT
TTAGAATTATTCTTATCCGTGCTAGAGGCGGAGGACAGCGCTGGATGAGC
TAAACATGCGTTGCATTTTTGAGGAGAATGATGTTGTCTGTGTAAGTCCC
GTTCTGTGTTTTTACTGAAAATTAATTTCATTGGTTGAAGCAAATGATGG
TTGATTAGTTTTCCTATACTATGTTTGTGACCCCAGGCTGAAGTTCGGGG
TTTCCAGCATGACGGCTTACACCTTCAAGCTAGGAGTCGGAAATATGGAA
AGGTGTGTTGCCTGGAAAATGCTCATAAATCATTTACTTCGTTTTATCTC
GCTTCTCTTTTCATCTCGAAATGTATTAGGCTTGTAGCACATTGTATAAA
GTAGGAGACAGTAGAAAATGAAAACTCTCTATGATATGGGCATTGTTGCT
GACAGATATAGAAGTACATAGGTAGTCTGCTTCCATGTCCCGACTATGGT
TTTCTGATTGAGATACGAGGACAACATTTTGAACTGAGGGTAAATAGTTT
TCTGTGTTCTTAGAAGGTGTTTATAGATGGCTTGAAATAGATTCTAGTTG
TTTCTTCAGTCTTGTACTGTTATTAATGTCTCTTGGTTGTGCAACAGCTT
AATAGAGGTCAGCTGCTTACAGTCCCACCTTATCTAGTGAAGAGACAGAA
ACAACATTTCCATCATCTGGAGGAGTTTGGCGTCGATTTGATACTTGGCT
GTAACGGATTCATATGGGTTGGGGAACATATTGAAGCCAAAGATGACATG
GTAGAAGATCAGGTGAGCCAATCCGATCCACCAGTTTTACTGCATAACAG
TGCAAGTCTTGAAGAACAAGAAAAAAATTATACGATATTGGAGATCAGAA
AATATATTTGCAGAGCAGCTAATGCTGTTAGAGTTCTATCAATCTTAGGC
TTCAATGTTACATTGGAAATAATCAAGGGAATTATTGATCTAAGCCTATC
TATGAATCTTGATATACATGAGATGCTTGGTTCTGAATTCTGTGTTCTGG
TTGCTGAAAAAGAGGCAGAAAGGAGGAGCTCAAATAAAAAGAAGCGGTAG
ATTGTGAAATGGCGGCTTTTTGACCGGGGAGAATTAATTCAGTTTACAAA
ATTGGTTTAATTGTAAAAGAAAATTTTTCCCAAATAGTGTAATGCACGTT
TGAGATTAGCATAGTGTAAAAGTGAATTCATATGTATGAATTATGAAGTG
AATGTTTAAAATGAATTGTCCATGGTTGTGGCCTTTCTTTTCTTTTTAAA
ATATTTGTTTAGGTAGCTAACTTCTAATAATATGAAAGACGAAAGGGAGT
TGTAATCTACCAAATACAGTTTTC
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Coding sequence (CDS) from alignment at Chr3:41012780..41014953-

>Va03G068160.2_Jingnong6 ID=Va03G068160.2_Jingnong6; Name=Va03G068160.2; organism=Vigna angularis; type=CDS; length=621bp; location=Sequence derived from: Chr3:41012780..41014953- (Vigna angularis
ATGCTTTCTTCCATGAATATGCCTGATGGGGTCCAGAGGCGGAGGACAGC
GCTGGATGAGCTAAACATGCGTTGCATTTTTGAGGAGAATGATGTTGTCT
GTGCTGAAGTTCGGGGTTTCCAGCATGACGGCTTACACCTTCAAGCTAGG
AGTCGGAAATATGGAAAGCTTAATAGAGGTCAGCTGCTTACAGTCCCACC
TTATCTAGTGAAGAGACAGAAACAACATTTCCATCATCTGGAGGAGTTTG
GCGTCGATTTGATACTTGGCTGTAACGGATTCATATGGGTTGGGGAACAT
ATTGAAGCCAAAGATGACATGGTAGAAGATCAGGTGAGCCAATCCGATCC
ACCAGTTTTACTGCATAACAGTGCAAGTCTTGAAGAACAAGAAAAAAATT
ATACGATATTGGAGATCAGAAAATATATTTGCAGAGCAGCTAATGCTGTT
AGAGTTCTATCAATCTTAGGCTTCAATGTTACATTGGAAATAATCAAGGG
AATTATTGATCTAAGCCTATCTATGAATCTTGATATACATGAGATGCTTG
GTTCTGAATTCTGTGTTCTGGTTGCTGAAAAAGAGGCAGAAAGGAGGAGC
TCAAATAAAAAGAAGCGGTAG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR004088KH_dom_type_1
IPR048565RRP4_S1
IPR026699Exosome_RNA_bind1/RRP40/RRP4
IPR012340NA-bd_OB-fold
IPR036612KH_dom_type_1_sf
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
Vocabulary: Cellular Component
TermDefinition
GO:0000178exosome (RNase complex)