Vum_07G00595.1
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of Vum_07G00595.1 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr5:6033797-6035216 FORWARD LENGTH=133) HSP 1 Score: 176.792 bits (447), Expect = 6.232e-58 Identity = 84/120 (70.00%), Postives = 93/120 (77.50%), Query Frame = 0 Query: 19 NIRCHHCAGPLSNRMETSLWTVSPLIRDSFSMIGSAVGGTASAFYGFNLVMPIVQRRIKGPMWLHFFIGAPPVIVFSSACAGLTGGAIPAAAQLLSSSYHAAYSSPTVPPPSENENIQKS 138 IRCHHCAGPL+ +ETS WTV P IRDSFSMIGSAVGGTASAF GFN MPIV++ IKGPMWLHF +GAPPVIV SSACAGL GG +PA AQL SSSY AA S P ++ +QKS Sbjct: 9 EIRCHHCAGPLTRNLETSKWTVDPFIRDSFSMIGSAVGGTASAFIGFNHAMPIVRKWIKGPMWLHFLVGAPPVIVLSSACAGLAGGTVPALAQLASSSYRAAVHSSQPPQAQKDNKMQKS 128
BLAST of Vum_07G00595.1 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr3:1047754-1049026 FORWARD LENGTH=138) HSP 1 Score: 174.866 bits (442), Expect = 3.461e-57 Identity = 85/127 (66.93%), Postives = 104/127 (81.89%), Query Frame = 0 Query: 10 TSKLSNSTQNI--RCHHCAGPLSNRMETSLWTVSPLIRDSFSMIGSAVGGTASAFYGFNLVMPIVQRRIKGPMWLHFFIGAPPVIVFSSACAGLTGGAIPAAAQLLSSSYHAAYSSPTVPPPSENEN 134 ++ +++S + I RCHHCAGPL+ +ET+ WTV+P IRDSFSMIGSAVGGTASAF GF+ VMPIV++ IKGPMWLHF +GAPPVIV SSACAGL GGA+PA AQL SSSYHAA S + PP +++N Sbjct: 2 SATMADSGKEIGSRCHHCAGPLTKNLETNEWTVAPFIRDSFSMIGSAVGGTASAFIGFHHVMPIVRKWIKGPMWLHFLVGAPPVIVVSSACAGLAGGAVPALAQLASSSYHAAVHS-SQPPQGQDKN 127
BLAST of Vum_07G00595.1 vs. Araport11
Match: | (Symbols: RED1 | Retarded Embryo Development 1 | chr2:17511071-17512898 REVERSE LENGTH=158) HSP 1 Score: 71.2478 bits (173), Expect = 3.021e-16 Identity = 34/92 (36.96%), Postives = 51/92 (55.43%), Query Frame = 0 Query: 21 RCHHCAGPLSNRMETSLWTVSPLIRDSFSMIGSAVGGTASAFYGFNLVMPIVQRRIKGPMWLHFFIGAPPVIVFSSACAGLTGGAIPAAAQL 112 RC C L+ E WT++P++ D+ ++ GS +GG SA + FN +P +Q R G L F +G P ++V+S A G A+P AQL Sbjct: 30 RCPRCLSLLNPNSEKGEWTITPVLHDAAAVAGSGIGGLLSAVHAFNTGIPYLQNRFSGSKRLSFLVGVPLLLVYSGVGAAFGGYALPKFAQL 121
BLAST of Vum_07G00595.1 vs. Araport11
Match: | (Symbols: RED1 | Retarded Embryo Development 1 | chr2:17509933-17512898 REVERSE LENGTH=166) HSP 1 Score: 70.8626 bits (172), Expect = 4.419e-16 Identity = 34/92 (36.96%), Postives = 51/92 (55.43%), Query Frame = 0 Query: 21 RCHHCAGPLSNRMETSLWTVSPLIRDSFSMIGSAVGGTASAFYGFNLVMPIVQRRIKGPMWLHFFIGAPPVIVFSSACAGLTGGAIPAAAQL 112 RC C L+ E WT++P++ D+ ++ GS +GG SA + FN +P +Q R G L F +G P ++V+S A G A+P AQL Sbjct: 30 RCPRCLSLLNPNSEKGEWTITPVLHDAAAVAGSGIGGLLSAVHAFNTGIPYLQNRFSGSKRLSFLVGVPLLLVYSGVGAAFGGYALPKFAQL 121
BLAST of Vum_07G00595.1 vs. Araport11
Match: | (Symbols: RED1 | Retarded Embryo Development 1 | chr2:17509933-17512898 REVERSE LENGTH=204) HSP 1 Score: 61.2326 bits (147), Expect = 4.250e-12 Identity = 31/89 (34.83%), Postives = 49/89 (55.06%), Query Frame = 0 Query: 21 RCHHCAGPLSNRMETSLWTVSPLIRDSFSMIGSAVGGTASAFYGFNLVMPIVQRRIKGPMWLHFFIGAPPVIVFSSACAGLTGGAIPAA 109 RC C L+ E WT++P++ D+ ++ GS +GG SA + FN +P +Q R G L F +G P ++V+S A G ++ AA Sbjct: 30 RCPRCLSLLNPNSEKGEWTITPVLHDAAAVAGSGIGGLLSAVHAFNTGIPYLQNRFSGSKRLSFLVGVPLLLVYSGVGAAF-GESLQAA 117
BLAST of Vum_07G00595.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A0S3SGZ7|A0A0S3SGZ7_PHAAN (Transmembrane protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.07G073600 PE=4 SV=1) HSP 1 Score: 289.271 bits (739), Expect = 1.078e-98 Identity = 139/140 (99.29%), Postives = 140/140 (100.00%), Query Frame = 0 Query: 1 MQHSDNNMETSKLSNSTQNIRCHHCAGPLSNRMETSLWTVSPLIRDSFSMIGSAVGGTASAFYGFNLVMPIVQRRIKGPMWLHFFIGAPPVIVFSSACAGLTGGAIPAAAQLLSSSYHAAYSSPTVPPPSENENIQKSIK 140 MQHSDNNMETSKLSNSTQNIRCHHCAGPLSNRMETSLWTVSPLIRDSFSMIGSAVGGTASAFYGFNLVMPIVQRRIKGPMWLHFFIGAPPVIVFSSACAGLTGGAIPAAAQL+SSSYHAAYSSPTVPPPSENENIQKSIK Sbjct: 1 MQHSDNNMETSKLSNSTQNIRCHHCAGPLSNRMETSLWTVSPLIRDSFSMIGSAVGGTASAFYGFNLVMPIVQRRIKGPMWLHFFIGAPPVIVFSSACAGLTGGAIPAAAQLVSSSYHAAYSSPTVPPPSENENIQKSIK 140
BLAST of Vum_07G00595.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A8T0JE88|A0A8T0JE88_PHAAN (Transmembrane protein OS=Phaseolus angularis OX=3914 GN=HKW66_Vig0216860 PE=4 SV=1) HSP 1 Score: 283.878 bits (725), Expect = 1.417e-96 Identity = 139/144 (96.53%), Postives = 140/144 (97.22%), Query Frame = 0 Query: 1 MQHSDNNMETSKLSNSTQNIRCHHCAGPLSNRMETSLWTVSPLIRDSFSMIGSAVGGTASAFYGFNLV----MPIVQRRIKGPMWLHFFIGAPPVIVFSSACAGLTGGAIPAAAQLLSSSYHAAYSSPTVPPPSENENIQKSIK 140 MQHSDNNMETSKLSNSTQNIRCHHCAGPLSNRMETSLWTVSPLIRDSFSMIGSAVGGTASAFYGFNLV MPIVQRRIKGPMWLHFFIGAPPVIVFSSACAGLTGGAIPAAAQL+SSSYHAAYSSPTVPPPSENENIQKSIK Sbjct: 1 MQHSDNNMETSKLSNSTQNIRCHHCAGPLSNRMETSLWTVSPLIRDSFSMIGSAVGGTASAFYGFNLVSNAVMPIVQRRIKGPMWLHFFIGAPPVIVFSSACAGLTGGAIPAAAQLVSSSYHAAYSSPTVPPPSENENIQKSIK 144
BLAST of Vum_07G00595.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A3Q0EWD2|A0A3Q0EWD2_VIGRR (Uncharacterized protein LOC106758629 isoform X2 OS=Vigna radiata var. radiata OX=3916 GN=LOC106758629 PE=4 SV=1) HSP 1 Score: 283.108 bits (723), Expect = 2.337e-96 Identity = 136/140 (97.14%), Postives = 138/140 (98.57%), Query Frame = 0 Query: 1 MQHSDNNMETSKLSNSTQNIRCHHCAGPLSNRMETSLWTVSPLIRDSFSMIGSAVGGTASAFYGFNLVMPIVQRRIKGPMWLHFFIGAPPVIVFSSACAGLTGGAIPAAAQLLSSSYHAAYSSPTVPPPSENENIQKSIK 140 MQH DNNMETSKLSNSTQNIRCHHCAGPLSNRMETSLW VSPLIRDSFSMIGSAVGGTASAFYGFNLVMPIVQRRIKGPMWLHFFIGAPPVIVFSSACAGLTGGAIPAAAQL+SSSYHAAYSSPTVPPPS+NENIQKSIK Sbjct: 1 MQHCDNNMETSKLSNSTQNIRCHHCAGPLSNRMETSLWNVSPLIRDSFSMIGSAVGGTASAFYGFNLVMPIVQRRIKGPMWLHFFIGAPPVIVFSSACAGLTGGAIPAAAQLVSSSYHAAYSSPTVPPPSKNENIQKSIK 140
BLAST of Vum_07G00595.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A3Q0EUR3|A0A3Q0EUR3_VIGRR (Uncharacterized protein LOC106758629 isoform X1 OS=Vigna radiata var. radiata OX=3916 GN=LOC106758629 PE=4 SV=1) HSP 1 Score: 278.1 bits (710), Expect = 2.905e-94 Identity = 136/144 (94.44%), Postives = 138/144 (95.83%), Query Frame = 0 Query: 1 MQHSDNNMETSKLSNSTQNIRCHHCAGPLSNRMETSLWTVSPLIRDSFSMIGSAVGGTASAFYGFNLV----MPIVQRRIKGPMWLHFFIGAPPVIVFSSACAGLTGGAIPAAAQLLSSSYHAAYSSPTVPPPSENENIQKSIK 140 MQH DNNMETSKLSNSTQNIRCHHCAGPLSNRMETSLW VSPLIRDSFSMIGSAVGGTASAFYGFNLV MPIVQRRIKGPMWLHFFIGAPPVIVFSSACAGLTGGAIPAAAQL+SSSYHAAYSSPTVPPPS+NENIQKSIK Sbjct: 1 MQHCDNNMETSKLSNSTQNIRCHHCAGPLSNRMETSLWNVSPLIRDSFSMIGSAVGGTASAFYGFNLVSNAVMPIVQRRIKGPMWLHFFIGAPPVIVFSSACAGLTGGAIPAAAQLVSSSYHAAYSSPTVPPPSKNENIQKSIK 144
BLAST of Vum_07G00595.1 vs. ExPASy TrEMBL (2024)
Match: tr|V7BYF3|V7BYF3_PHAVU (Transmembrane protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_005G124000g PE=4 SV=1) HSP 1 Score: 253.447 bits (646), Expect = 1.364e-84 Identity = 123/140 (87.86%), Postives = 127/140 (90.71%), Query Frame = 0 Query: 1 MQHSDNNMETSKLSNSTQNIRCHHCAGPLSNRMETSLWTVSPLIRDSFSMIGSAVGGTASAFYGFNLVMPIVQRRIKGPMWLHFFIGAPPVIVFSSACAGLTGGAIPAAAQLLSSSYHAAYSSPTVPPPSENENIQKSIK 140 MQHSDN ME SKLSNS QNIRCHHCAGPLSNRMETS WTVSPLIRDSFSMIGSAVGGT SAFYGFNLVMPIVQRRIKGPMWLHF IGAPPVIVFSSACAGL GGA+PAAAQL+SSSYHAAY PPPS++E IQKSIK Sbjct: 1 MQHSDNEMEASKLSNSIQNIRCHHCAGPLSNRMETSHWTVSPLIRDSFSMIGSAVGGTTSAFYGFNLVMPIVQRRIKGPMWLHFLIGAPPVIVFSSACAGLAGGAVPAAAQLVSSSYHAAY-----PPPSKDEYIQKSIK 135
BLAST of Vum_07G00595.1 vs. ExPASy TrEMBL (2024)
Match: tr|C6TB57|C6TB57_SOYBN (Transmembrane protein OS=Glycine max OX=3847 PE=2 SV=1) HSP 1 Score: 236.884 bits (603), Expect = 5.139e-78 Identity = 113/136 (83.09%), Postives = 122/136 (89.71%), Query Frame = 0 Query: 5 DNNMETSKLSNSTQNIRCHHCAGPLSNRMETSLWTVSPLIRDSFSMIGSAVGGTASAFYGFNLVMPIVQRRIKGPMWLHFFIGAPPVIVFSSACAGLTGGAIPAAAQLLSSSYHAAYSSPTVPPPSENENIQKSIK 140 ++ ME SKLS+S QN+RCHHCAGPLS METS WTVSPLIRDSFSMIGSAVGG ASAFYGFNLVMPIVQRRIKGPMWLHF IGAPPVIVFSSACAGL GGA+PAAAQL+SS YHAAY PT PPPS++ENIQ+S K Sbjct: 3 NSAMEASKLSSSDQNVRCHHCAGPLSKDMETSHWTVSPLIRDSFSMIGSAVGGVASAFYGFNLVMPIVQRRIKGPMWLHFLIGAPPVIVFSSACAGLAGGAVPAAAQLVSSFYHAAYFFPTSPPPSKDENIQRSRK 138
BLAST of Vum_07G00595.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0AA86SZ05|A0AA86SZ05_9FABA (Uncharacterized protein OS=Sphenostylis stenocarpa OX=92480 GN=AYBTSS11_LOCUS16501 PE=4 SV=1) HSP 1 Score: 236.498 bits (602), Expect = 2.228e-77 Identity = 121/135 (89.63%), Postives = 130/135 (96.30%), Query Frame = 0 Query: 1 MQHSDNNMETSKLSNSTQNIRCHHCAGPLSNRMETSLWTVSPLIRDSFSMIGSAVGGTASAFYGFNLVMPIVQRRIKGPMWLHFFIGAPPVIVFSSACAGLTGGAIPAAAQLLSSSYHAAYSSPTVPPPSENENI 135 +QHSDNNME S+LSNS+QNIRCHHCAGPLSNRMETS WTVSPLIRDSFSMIGSAVGGTASAFYGFNLVMPIVQRRIKGPMWLHF IGAPPVIVFSSACAGL GGA+PAAAQL+SSSYHAAYSSPT PPPS++++I Sbjct: 41 IQHSDNNMEASRLSNSSQNIRCHHCAGPLSNRMETSQWTVSPLIRDSFSMIGSAVGGTASAFYGFNLVMPIVQRRIKGPMWLHFLIGAPPVIVFSSACAGLAGGAVPAAAQLVSSSYHAAYSSPTAPPPSKDKHI 175
BLAST of Vum_07G00595.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A151RMW4|A0A151RMW4_CAJCA (Uncharacterized protein OS=Cajanus cajan OX=3821 GN=KK1_034640 PE=4 SV=1) HSP 1 Score: 223.402 bits (568), Expect = 9.121e-73 Identity = 105/122 (86.07%), Postives = 116/122 (95.08%), Query Frame = 0 Query: 19 NIRCHHCAGPLSNRMETSLWTVSPLIRDSFSMIGSAVGGTASAFYGFNLVMPIVQRRIKGPMWLHFFIGAPPVIVFSSACAGLTGGAIPAAAQLLSSSYHAAYSSPTVPPPSENENIQKSIK 140 +IRCHHCAGPLSN+MET+ WTVSPLIRDSFSMIGSAVGGTASAFYGFNLVMP+VQRRIKGPMWLHF IGAPPVIVFSSACAGL GGA+PAAAQL+SSSY+AAYS+ T+PPPS++ NIQKS K Sbjct: 14 DIRCHHCAGPLSNQMETTHWTVSPLIRDSFSMIGSAVGGTASAFYGFNLVMPVVQRRIKGPMWLHFLIGAPPVIVFSSACAGLAGGAVPAAAQLVSSSYNAAYSTSTLPPPSKDGNIQKSRK 135
BLAST of Vum_07G00595.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A8B8K979|A0A8B8K979_ABRPR (Uncharacterized protein LOC113853839 OS=Abrus precatorius OX=3816 GN=LOC113853839 PE=4 SV=1) HSP 1 Score: 221.476 bits (563), Expect = 7.335e-72 Identity = 108/137 (78.83%), Postives = 117/137 (85.40%), Query Frame = 0 Query: 8 METSKLSNST----QNIRCHHCAGPLSNRMETSLWTVSPLIRDSFSMIGSAVGGTASAFYGFNLVMPIVQRRIKGPMWLHFFIGAPPVIVFSSACAGLTGGAIPAAAQLLSSSYHAAYSSPTVPPPSENENIQKSIK 140 M SK SNS QNIRCHHCAGPLS MET+ WTV P IRDSFSMIGSAVGGTASAFYGFN VMP+V+R +KGPMWLHF IGAPPVIVFSSACAGL GGA+PA AQL+SSSYHAA+SSPT+ PPSE+ENIQKS K Sbjct: 1 MGASKPSNSQSSPYQNIRCHHCAGPLSKDMETTQWTVPPFIRDSFSMIGSAVGGTASAFYGFNHVMPVVRRSVKGPMWLHFLIGAPPVIVFSSACAGLAGGAVPAVAQLVSSSYHAAFSSPTLAPPSEDENIQKSRK 137
BLAST of Vum_07G00595.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A5N6RG49|A0A5N6RG49_9ROSI (Gb protein OS=Carpinus fangiana OX=176857 GN=FH972_016430 PE=4 SV=1) HSP 1 Score: 210.305 bits (534), Expect = 1.496e-67 Identity = 98/125 (78.40%), Postives = 109/125 (87.20%), Query Frame = 0 Query: 14 SNSTQNIRCHHCAGPLSNRMETSLWTVSPLIRDSFSMIGSAVGGTASAFYGFNLVMPIVQRRIKGPMWLHFFIGAPPVIVFSSACAGLTGGAIPAAAQLLSSSYHAAYSSPTVPPPSENENIQKS 138 S + N+RCHHCAGPLS METS WTV PLIRDSFSMIGSAVGGT SAFYGFN VMPIV+RR+KGPMWLHF IGAPPVIVFSSACAGL GGA+PA AQL SSSYHAA +SP++PPPS++E + KS Sbjct: 4 SKPSINMRCHHCAGPLSKEMETSRWTVPPLIRDSFSMIGSAVGGTTSAFYGFNHVMPIVRRRVKGPMWLHFLIGAPPVIVFSSACAGLAGGAVPALAQLASSSYHAAITSPSLPPPSQDEKMHKS 128 The following BLAST results are available for this feature:
BLAST of Vum_07G00595.1 vs. Araport11
Analysis Date: 2024-06-26 (Vigna umbellata FF25 genome v1.0) Total hits: 5
BLAST of Vum_07G00595.1 vs. ExPASy TrEMBL (2024)
Analysis Date: 2024-08-05 (Blastp of Vigna umbellata FF25 v1.0 proteins vs UniProt TrEMBL) Total hits: 10
BLAST of Vum_07G00595.1 vs. ExPASy TrEMBL (2024)
Analysis Date: 2024-08-05 (Blastp of Vigna umbellata FF25 v1.0 proteins vs UniProt Swissprot ) Total hits: 0
InterPro
Analysis Name: InterProScan Analysis for Vigna umbellata FF25 genome v1.0
Date Performed: 2024-08-05
Sequences
The
following sequences are available for this feature:
mRNA sequence >drVigUmbe.FF25.1.0.Vum_07G00595.1 ID=drVigUmbe.FF25.1.0.Vum_07G00595.1; Name=Vum_07G00595.1; organism=Vigna umbellata; type=mRNA; length=423bpback to top protein sequence of drVigUmbe.FF25.1.0.Vum_07G00595.1 >drVigUmbe.FF25.1.0.Vum_07G00595.1 ID=drVigUmbe.FF25.1.0.Vum_07G00595.1; Name=drVigUmbe.FF25.1.0.Vum_07G00595.1; organism=Vigna umbellata; type=polypeptide; length=140bpback to top mRNA from alignment at Chr7:5460980..5464079- Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below.>drVigUmbe.FF25.1.0.Vum_07G00595.1 ID=drVigUmbe.FF25.1.0.Vum_07G00595.1; Name=Vum_07G00595.1; organism=Vigna umbellata; type=mRNA; length=3100bp; location=Sequence derived from: Chr7:5460980..5464079- (Vigna umbellataback to top Coding sequence (CDS) from alignment at Chr7:5460980..5464079- >drVigUmbe.FF25.1.0.Vum_07G00595.1 ID=drVigUmbe.FF25.1.0.Vum_07G00595.1; Name=Vum_07G00595.1; organism=Vigna umbellata; type=CDS; length=423bp; location=Sequence derived from: Chr7:5460980..5464079- (Vigna umbellataback to top |