evm.Ca_v2.0_23072

Transcript Overview


Name	evm.Ca_v2.0_23072
Unique Name	drCicArie.Frontier.2.0.Ca_v2.0_23072.1
Type	mRNA
Organism	Cicer arietinum (chickpea)
Sequence length	447

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
Ca8_v2.0	chromosome	Ca8_v2.0:1839100..1841027 +	Cicer arietinum cv. CDC Frontier genome v2.0	n/a

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Cicer arietinum cv. CDC Frontier genome v2.0	2024-06-26
InterProScan Analysis for Cicer arietinum cv. CDC Frontier genome v2.0	2024-07-26
Blastp of Cicer arietinum cv. CDC Frontier v2.0 proteins vs arabidopsis Araport11	2024-07-26
Blastp of Cicer arietinum cv. CDC Frontier v2.0 proteins vs UniProt Swissprot	2024-07-26
Blastp of Cicer arietinum cv. CDC Frontier v2.0 proteins vs UniProt TrEMBL	2024-07-26

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
evm.Ca_v2.0_23072	drCicArie.Frontier.2.0.Ca_v2.0_23072	Cicer arietinum	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
drCicArie.Frontier.2.0.Ca_v2.0_23072.1.exon1	drCicArie.Frontier.2.0.Ca_v2.0_23072.1.exon1	Cicer arietinum	exon
drCicArie.Frontier.2.0.Ca_v2.0_23072.1.exon2	drCicArie.Frontier.2.0.Ca_v2.0_23072.1.exon2	Cicer arietinum	exon
drCicArie.Frontier.2.0.Ca_v2.0_23072.1.exon3	drCicArie.Frontier.2.0.Ca_v2.0_23072.1.exon3	Cicer arietinum	exon
drCicArie.Frontier.2.0.Ca_v2.0_23072.1.exon4	drCicArie.Frontier.2.0.Ca_v2.0_23072.1.exon4	Cicer arietinum	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
drCicArie.Frontier.2.0.Ca_v2.0_23072.1.utr5p1	drCicArie.Frontier.2.0.Ca_v2.0_23072.1.utr5p1	Cicer arietinum	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
drCicArie.Frontier.2.0.cds.Ca_v2.0_23072.1	drCicArie.Frontier.2.0.cds.Ca_v2.0_23072.1	Cicer arietinum	CDS
drCicArie.Frontier.2.0.cds.Ca_v2.0_23072.1	drCicArie.Frontier.2.0.cds.Ca_v2.0_23072.1_2	Cicer arietinum	CDS
drCicArie.Frontier.2.0.cds.Ca_v2.0_23072.1	drCicArie.Frontier.2.0.cds.Ca_v2.0_23072.1_3	Cicer arietinum	CDS
drCicArie.Frontier.2.0.cds.Ca_v2.0_23072.1	drCicArie.Frontier.2.0.cds.Ca_v2.0_23072.1_4	Cicer arietinum	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
drCicArie.Frontier.2.0.Ca_v2.0_23072.1.utr3p1	drCicArie.Frontier.2.0.Ca_v2.0_23072.1.utr3p1	Cicer arietinum	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
drCicArie.Frontier.2.0.Ca_v2.0_23072.1	drCicArie.Frontier.2.0.Ca_v2.0_23072.1	Cicer arietinum	polypeptide
drCicArie.Frontier.2.0.Ca_v2.0_23072.1	drCicArie.Frontier.2.0.Ca_v2.0_23072.1-protein	Cicer arietinum	polypeptide

Homology

[Close]

BLAST of evm.Ca_v2.0_23072 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr3:18142863-18144163 REVERSE LENGTH=175)

HSP 1 Score: 72.4034 bits (176), Expect = 2.207e-16
Identity = 38/66 (57.58%), Postives = 49/66 (74.24%), Query Frame = 0

Query:   73 DTTRDSTGRDAGLTRIVTEKRLALIKAWEESEKTKAENRAYKKQSAVVLWEESRKASIEAQLKKFE 138
            D    S  RDA L R+  +KR++LIKAWEE+EK+K EN+A KK S+V  WE S+KAS+EA+LKK E
Sbjct:   46 DKKVGSVHRDAVLVRLEQDKRISLIKAWEEAEKSKVENKAQKKISSVGAWENSKKASVEAELKKIE 111

[Close]

BLAST of evm.Ca_v2.0_23072 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr5:8010004-8011624 REVERSE LENGTH=229)

HSP 1 Score: 73.1738 bits (178), Expect = 2.377e-16
Identity = 36/61 (59.02%), Postives = 48/61 (78.69%), Query Frame = 0

Query:   78 STGRDAGLTRIVTEKRLALIKAWEESEKTKAENRAYKKQSAVVLWEESRKASIEAQLKKFE 138
            S  RDA L R+ TEKR++LIKAWEE+EK K EN+A KK S++  WE ++KA++EA+LKK E
Sbjct:  105 SVNRDAVLARVETEKRMSLIKAWEEAEKCKVENKAEKKLSSIGSWENNKKAAVEAELKKME 165

[Close]

BLAST of evm.Ca_v2.0_23072 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr5:8010004-8011453 REVERSE LENGTH=201)

HSP 1 Score: 72.7886 bits (177), Expect = 2.409e-16
Identity = 36/61 (59.02%), Postives = 48/61 (78.69%), Query Frame = 0

Query:   78 STGRDAGLTRIVTEKRLALIKAWEESEKTKAENRAYKKQSAVVLWEESRKASIEAQLKKFE 138
            S  RDA L R+ TEKR++LIKAWEE+EK K EN+A KK S++  WE ++KA++EA+LKK E
Sbjct:   77 SVNRDAVLARVETEKRMSLIKAWEEAEKCKVENKAEKKLSSIGSWENNKKAAVEAELKKME 137

[Close]

BLAST of evm.Ca_v2.0_23072 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr5:8010004-8011453 REVERSE LENGTH=202)

HSP 1 Score: 72.4034 bits (176), Expect = 3.505e-16
Identity = 36/61 (59.02%), Postives = 48/61 (78.69%), Query Frame = 0

Query:   78 STGRDAGLTRIVTEKRLALIKAWEESEKTKAENRAYKKQSAVVLWEESRKASIEAQLKKFE 138
            S  RDA L R+ TEKR++LIKAWEE+EK K EN+A KK S++  WE ++KA++EA+LKK E
Sbjct:   78 SVNRDAVLARVETEKRMSLIKAWEEAEKCKVENKAEKKLSSIGSWENNKKAAVEAELKKME 138

[Close]

BLAST of evm.Ca_v2.0_23072 vs. Araport11
Match: | (Symbols: REM1.2 | REMORIN 1.2 | chr3:22675403-22676701 REVERSE LENGTH=212)

HSP 1 Score: 67.3958 bits (163), Expect = 3.383e-14
Identity = 35/61 (57.38%), Postives = 45/61 (73.77%), Query Frame = 0

Query:   78 STGRDAGLTRIVTEKRLALIKAWEESEKTKAENRAYKKQSAVVLWEESRKASIEAQLKKFE 138
            S  RD  L  +  EKRL+ ++AWEESEK+KAEN+A KK + V  WE S+KA++EAQLKK E
Sbjct:   88 SLDRDVKLADLSKEKRLSFVRAWEESEKSKAENKAEKKIADVHAWENSKKAAVEAQLKKIE 148

[Close]

BLAST of evm.Ca_v2.0_23072 vs. Araport11
Match: | (Symbols: Rem1.3 | Remorin 1.3 | chr2:18863147-18864576 REVERSE LENGTH=190)

HSP 1 Score: 65.4698 bits (158), Expect = 9.693e-14
Identity = 38/69 (55.07%), Postives = 48/69 (69.57%), Query Frame = 0

Query:   67 EHDDKKDTTRDSTGRDAGLTRIVTEKRLALIKAWEESEKTKAENRAYKKQSAVVLWEESRKASIEAQLK 135
            EH  KK ++  S  RD  L  +  EK+ + IKAWEESEK+KAENRA KK S V  WE S+KA++EAQL+
Sbjct:   56 EHTPKKASS-GSADRDVILADLEKEKKTSFIKAWEESEKSKAENRAQKKISDVHAWENSKKAAVEAQLR 123

[Close]

BLAST of evm.Ca_v2.0_23072 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr1:23474129-23475300 REVERSE LENGTH=151)

HSP 1 Score: 54.299 bits (129), Expect = 9.771e-10
Identity = 28/61 (45.90%), Postives = 41/61 (67.21%), Query Frame = 0

Query:   78 STGRDAGLTRIVTEKRLALIKAWEESEKTKAENRAYKKQSAVVLWEESRKASIEAQLKKFE 138
            ++ ++  L  I  EKRLALI AWEE+EK KA+ +AYK+  ++  WE + K ++E  LKK E
Sbjct:   24 ASSQNEKLVEIEKEKRLALIDAWEENEKAKAQTKAYKELCSIESWENNMKTALELDLKKME 84

[Close]

BLAST of evm.Ca_v2.0_23072 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr1:23474129-23475420 REVERSE LENGTH=191)

HSP 1 Score: 54.299 bits (129), Expect = 1.670e-9
Identity = 28/61 (45.90%), Postives = 41/61 (67.21%), Query Frame = 0

Query:   78 STGRDAGLTRIVTEKRLALIKAWEESEKTKAENRAYKKQSAVVLWEESRKASIEAQLKKFE 138
            ++ ++  L  I  EKRLALI AWEE+EK KA+ +AYK+  ++  WE + K ++E  LKK E
Sbjct:   64 ASSQNEKLVEIEKEKRLALIDAWEENEKAKAQTKAYKELCSIESWENNMKTALELDLKKME 124

[Close]

BLAST of evm.Ca_v2.0_23072 vs. ExPASy Swiss-Prot (2024)
Match: sp|P93788|REMO_SOLTU (Remorin OS=Solanum tuberosum OX=4113 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.068e-18
Identity = 49/103 (47.57%), Postives = 67/103 (65.05%), Query Frame = 0

Query:   47 LVASSLDP-----------KVVDHADSKETGEHDDKKDTTRDSTGRDAGLTRIVTEKRLALIKAWEESEKTKAENRAYKKQSAVVLWEESRKASIEAQLKKFE 138
            +VA +L P           K +   ++K     D+KK+ + D   RDA L R+ TEKR++LIKAWEESEK+KAEN+A KK SA+  WE S+KA++EA+LKK E
Sbjct:   35 IVAPALPPPAEEKEKPDDSKALVVVETKAPEPADEKKEGSID---RDAVLARVATEKRVSLIKAWEESEKSKAENKAQKKVSAIGAWENSKKANLEAELKKME 134

[Close]

BLAST of evm.Ca_v2.0_23072 vs. ExPASy Swiss-Prot (2024)
Match: sp|Q9FFA5|RMR14_ARATH (Remorin 1.4 OS=Arabidopsis thaliana OX=3702 GN=REM1.4 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.408e-15
Identity = 36/61 (59.02%), Postives = 48/61 (78.69%), Query Frame = 0

Query:   78 STGRDAGLTRIVTEKRLALIKAWEESEKTKAENRAYKKQSAVVLWEESRKASIEAQLKKFE 138
            S  RDA L R+ TEKR++LIKAWEE+EK K EN+A KK S++  WE ++KA++EA+LKK E
Sbjct:   78 SVNRDAVLARVETEKRMSLIKAWEEAEKCKVENKAEKKLSSIGSWENNKKAAVEAELKKME 138

[Close]

BLAST of evm.Ca_v2.0_23072 vs. ExPASy Swiss-Prot (2024)
Match: sp|Q9M2D8|Y3126_ARATH (Uncharacterized protein At3g61260 OS=Arabidopsis thaliana OX=3702 GN=At3g61260 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 3.298e-13
Identity = 35/61 (57.38%), Postives = 45/61 (73.77%), Query Frame = 0

Query:   78 STGRDAGLTRIVTEKRLALIKAWEESEKTKAENRAYKKQSAVVLWEESRKASIEAQLKKFE 138
            S  RD  L  +  EKRL+ ++AWEESEK+KAEN+A KK + V  WE S+KA++EAQLKK E
Sbjct:   88 SLDRDVKLADLSKEKRLSFVRAWEESEKSKAENKAEKKIADVHAWENSKKAAVEAQLKKIE 148

[Close]

BLAST of evm.Ca_v2.0_23072 vs. ExPASy Swiss-Prot (2024)
Match: sp|O80837|REMO_ARATH (Remorin OS=Arabidopsis thaliana OX=3702 GN=DBP PE=1 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.433e-13
Identity = 38/69 (55.07%), Postives = 48/69 (69.57%), Query Frame = 0

Query:   67 EHDDKKDTTRDSTGRDAGLTRIVTEKRLALIKAWEESEKTKAENRAYKKQSAVVLWEESRKASIEAQLK 135
            EH  KK ++  S  RD  L  +  EK+ + IKAWEESEK+KAENRA KK S V  WE S+KA++EAQL+
Sbjct:   56 EHTPKKASS-GSADRDVILADLEKEKKTSFIKAWEESEKSKAENRAQKKISDVHAWENSKKAAVEAQLR 123

[Close]

BLAST of evm.Ca_v2.0_23072 vs. ExPASy TrEMBL (2024)
Match: tr|A0A1S2YXN6|A0A1S2YXN6_CICAR (Remorin-like isoform X1 OS=Cicer arietinum OX=3827 GN=LOC101500291 PE=3 SV=1)

HSP 1 Score: 277.715 bits (709), Expect = 5.023e-93
Identity = 138/138 (100.00%), Postives = 138/138 (100.00%), Query Frame = 0

Query:    1 MGEEDSNINKTEPESLDSVPEENFTIQENESEKPNTLNTINHESNELVASSLDPKVVDHADSKETGEHDDKKDTTRDSTGRDAGLTRIVTEKRLALIKAWEESEKTKAENRAYKKQSAVVLWEESRKASIEAQLKKFE 138
            MGEEDSNINKTEPESLDSVPEENFTIQENESEKPNTLNTINHESNELVASSLDPKVVDHADSKETGEHDDKKDTTRDSTGRDAGLTRIVTEKRLALIKAWEESEKTKAENRAYKKQSAVVLWEESRKASIEAQLKKFE
Sbjct:    1 MGEEDSNINKTEPESLDSVPEENFTIQENESEKPNTLNTINHESNELVASSLDPKVVDHADSKETGEHDDKKDTTRDSTGRDAGLTRIVTEKRLALIKAWEESEKTKAENRAYKKQSAVVLWEESRKASIEAQLKKFE 138

[Close]

BLAST of evm.Ca_v2.0_23072 vs. ExPASy TrEMBL (2024)
Match: tr|A0A1S2YXN8|A0A1S2YXN8_CICAR (Remorin-like isoform X2 OS=Cicer arietinum OX=3827 GN=LOC101500291 PE=3 SV=1)

HSP 1 Score: 266.929 bits (681), Expect = 6.496e-89
Identity = 136/138 (98.55%), Postives = 136/138 (98.55%), Query Frame = 0

Query:    1 MGEEDSNINKTEPESLDSVPEENFTIQENESEKPNTLNTINHESNELVASSLDPKVVDHADSKETGEHDDKKDTTRDSTGRDAGLTRIVTEKRLALIKAWEESEKTKAENRAYKKQSAVVLWEESRKASIEAQLKKFE 138
            MGEEDSNINKTEPESLDSVPEENFTIQENESEKPNTLNTINHESNELVASSLDPKVVDHADSKETGEHDDKKDTTRDST  DAGLTRIVTEKRLALIKAWEESEKTKAENRAYKKQSAVVLWEESRKASIEAQLKKFE
Sbjct:    1 MGEEDSNINKTEPESLDSVPEENFTIQENESEKPNTLNTINHESNELVASSLDPKVVDHADSKETGEHDDKKDTTRDST--DAGLTRIVTEKRLALIKAWEESEKTKAENRAYKKQSAVVLWEESRKASIEAQLKKFE 136

[Close]

BLAST of evm.Ca_v2.0_23072 vs. ExPASy TrEMBL (2024)
Match: tr|A0A8B8LWF3|A0A8B8LWF3_ABRPR (Remorin-like OS=Abrus precatorius OX=3816 GN=LOC113868558 PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.197e-42
Identity = 86/140 (61.43%), Postives = 100/140 (71.43%), Query Frame = 0

Query:    1 MGEEDSNINKTEPESLDSVPE-ENFTIQENESEKPNTLN-TINHESNELVASSLDPKVVDHADSKETGEHDDKKDTTRDSTGRDAGLTRIVTEKRLALIKAWEESEKTKAENRAYKKQSAVVLWEESRKASIEAQLKKFE 138
            MGEE SN N+TEP+ L SVPE E   +QEN+SE P+  N  +N + NE   SS+D +V DHAD  +TG          DS  +DA L R+V EKRLALIKAWEESEKTKAENRAYKK SAV LWE+SRKAS+EAQLKK E
Sbjct:    1 MGEESSNQNQTEPQ-LPSVPETEQSPVQENQSETPDPPNAVVNPDPNEKTTSSVDQQVADHADKTDTG----------DSVDKDAMLARVVAEKRLALIKAWEESEKTKAENRAYKKNSAVGLWEDSRKASVEAQLKKIE 129

[Close]

BLAST of evm.Ca_v2.0_23072 vs. ExPASy TrEMBL (2024)
Match: tr|A0A9D4YI18|A0A9D4YI18_PEA (Remorin C-terminal domain-containing protein OS=Pisum sativum OX=3888 GN=KIW84_025322 PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 2.152e-41
Identity = 87/144 (60.42%), Postives = 108/144 (75.00%), Query Frame = 0

Query:    1 MGE---EDSNINKTEPES-LDSVPEENFTIQENESEKPNTLNTINHESNELVASSLDPKVV--DHADSKETGEHDDKKDTTRDSTGRDAGLTRIVTEKRLALIKAWEESEKTKAENRAYKKQSAVVLWEESRKASIEAQLKKFE 138
            MGE   ED+++NKTE +  LD VPEE   +QE+ES      + +N E ++ V S++D + V  DHA++KET  H D KDT + S+ +D GL +IV EKRLALIKAWE+SEKTKAENRAYKKQSAV LWEES+KASIEAQLKKFE
Sbjct:    1 MGELELEDNSLNKTESQQPLDPVPEERSPLQEHES------DIVNQEPDQSVTSTVDDQKVADDHAENKETENHHDNKDT-KGSSDKDTGLAKIVAEKRLALIKAWEDSEKTKAENRAYKKQSAVGLWEESKKASIEAQLKKFE 137

[Close]

BLAST of evm.Ca_v2.0_23072 vs. ExPASy TrEMBL (2024)
Match: tr|G7KDE5|G7KDE5_MEDTR (Carboxy-terminal region remorin OS=Medicago truncatula OX=3880 GN=11443068 PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 1.155e-39
Identity = 97/155 (62.58%), Postives = 116/155 (74.84%), Query Frame = 0

Query:    1 MGE-EDSNINKTE-PES---LDSVPEENFTIQENESEKPNTLNTINHESNELVASSLDPKVV--DHADSKETGEHDDKKDTTRDSTGRDAGLTRIVTEKRLALIKAWEESEKTKAENRAYKKQSAVVLWEESRKASIEAQLKKFEVINSWIYACK 148
            MGE E S+INKTE P+    LD VPEE   + E +SE  +T+ +I+ E N+   S+LD + V  DHAD+KETG+HDDKKD    +  RDAGL +IV EKRLALIKAWEESEKTKAENRAYKKQS+V LWEES+K+SIEAQLKKFEVI    + CK
Sbjct:    1 MGESEGSSINKTESPQLQSLLDPVPEELSPVVEKDSETLSTI-SISQEPNQQAISTLDDQKVADDHADNKETGDHDDKKDAKDSTD-RDAGLAKIVAEKRLALIKAWEESEKTKAENRAYKKQSSVGLWEESKKSSIEAQLKKFEVI-IISFCCK 152

[Close]

BLAST of evm.Ca_v2.0_23072 vs. ExPASy TrEMBL (2024)
Match: tr|G7KDE4|G7KDE4_MEDTR (Carboxy-terminal region remorin OS=Medicago truncatula OX=3880 GN=11443068 PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 1.064e-37
Identity = 93/145 (64.14%), Postives = 111/145 (76.55%), Query Frame = 0

Query:    1 MGE-EDSNINKTE-PES---LDSVPEENFTIQENESEKPNTLNTINHESNELVASSLDPKVV--DHADSKETGEHDDKKDTTRDSTGRDAGLTRIVTEKRLALIKAWEESEKTKAENRAYKKQSAVVLWEESRKASIEAQLKKFE 138
            MGE E S+INKTE P+    LD VPEE   + E +SE  +T+ +I+ E N+   S+LD + V  DHAD+KETG+HDDKKD    +  RDAGL +IV EKRLALIKAWEESEKTKAENRAYKKQS+V LWEES+K+SIEAQLKKFE
Sbjct:    1 MGESEGSSINKTESPQLQSLLDPVPEELSPVVEKDSETLSTI-SISQEPNQQAISTLDDQKVADDHADNKETGDHDDKKDAKDSTD-RDAGLAKIVAEKRLALIKAWEESEKTKAENRAYKKQSSVGLWEESKKSSIEAQLKKFE 143

[Close]

BLAST of evm.Ca_v2.0_23072 vs. ExPASy TrEMBL (2024)
Match: tr|I3SR01|I3SR01_LOTJA (Remorin C-terminal domain-containing protein OS=Lotus japonicus OX=34305 PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.681e-37
Identity = 81/140 (57.86%), Postives = 95/140 (67.86%), Query Frame = 0

Query:    1 MGEEDSNINKTEPES--LDSVPEENFTIQENESEKPNTLNTINHESNELVASSLDPKVVDHADSKETGEHDDKKDTTRDSTGRDAGLTRIVTEKRLALIKAWEESEKTKAENRAYKKQSAVVLWEESRKASIEAQLKKFE 138
            MGEEDSN+NK E ++  +DSV E+   ++E ESEKP  +     E ++ V S +   V D          DD K  T  S  RDA L R+VTEKRLALIKAWEESE+TKAENRAYKKQSAV LWEESRKASIEA+LKK E
Sbjct:    1 MGEEDSNLNKVESQTEFVDSVSEQEPQVEEKESEKPEAVT--QEEPHKEVPSPIVQNVAD----------DDAKKVTGGSVDRDAALARVVTEKRLALIKAWEESERTKAENRAYKKQSAVGLWEESRKASIEAELKKIE 128

[Close]

BLAST of evm.Ca_v2.0_23072 vs. ExPASy TrEMBL (2024)
Match: tr|A0A2K3MN85|A0A2K3MN85_TRIPR (Remorin OS=Trifolium pratense OX=57577 GN=remorin PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 1.020e-36
Identity = 96/145 (66.21%), Postives = 110/145 (75.86%), Query Frame = 0

Query:    1 MGE-EDSNINKTEPESLDSVPEENFTIQENESEKPNTLNTINHESNELVASSL---DPKVV-DHADSKETGEHDDKKDTTRDSTGRDAGLTRIVTEKRLALIKAWEESEKTKAENR--AYKKQSAVVLWEESRKASIEAQLKKFE 138
            MGE E S++NKTE  SL+ VPEE+  +   ES   + LNTI+ E N+   +S+   D KVV DHAD+KETG+HDDKKDT   +  RD GL +IV EKRLALIKAWEESEKTKAENR  AYKKQSAV LWEESRKASIEAQLKKFE
Sbjct:    1 MGELEGSDLNKTES-SLEVVPEEHSPVLVKES---DALNTISQEPNDQQVTSIVDDDQKVVEDHADNKETGDHDDKKDTKDSTD-RDTGLAKIVAEKRLALIKAWEESEKTKAENRQEAYKKQSAVGLWEESRKASIEAQLKKFE 140

[Close]

BLAST of evm.Ca_v2.0_23072 vs. ExPASy TrEMBL (2024)
Match: tr|V7CK08|V7CK08_PHAVU (Remorin C-terminal domain-containing protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_002G155800g PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 1.673e-31
Identity = 80/142 (56.34%), Postives = 92/142 (64.79%), Query Frame = 0

Query:    1 MGEEDSNINKTEPES--LDSVPEENFTIQENESEKPNTLNTINHESNELVASSLDP--KVVDHADSKETGEHDDKKDTTRDSTGRDAGLTRIVTEKRLALIKAWEESEKTKAENRAYKKQSAVVLWEESRKASIEAQLKKFE 138
            MGEE SN  +TE  S  +DSVP     +QE ES+KP+        SNE V S   P  KV DHA  K+T           DS  +D  L R++TEKRLALIKAWEESEKTKAENRAYKK SAV LWE+SRKAS+EA+LKK E
Sbjct:    1 MGEEVSNKTETESHSAVVDSVP----PLQEKESDKPDP-------SNENVTSPSPPVQKVEDHAAEKDT----------EDSVSKDVMLARVLTEKRLALIKAWEESEKTKAENRAYKKHSAVELWEDSRKASVEAELKKIE 121

[Close]

BLAST of evm.Ca_v2.0_23072 vs. ExPASy TrEMBL (2024)
Match: tr|K7K561|K7K561_SOYBN (Remorin C-terminal domain-containing protein OS=Glycine max OX=3847 GN=100815301 PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 3.692e-31
Identity = 78/141 (55.32%), Postives = 96/141 (68.09%), Query Frame = 0

Query:    1 MGEEDSNINKTEPE--SLDSVPEE-NFTIQENESEKPNTLNTINHESNELVASSLDPKVVDHADSKETGEHDDKKDTTRDSTGRDAGLTRIVTEKRLALIKAWEESEKTKAENRAYKKQSAVVLWEESRKASIEAQLKKFE 138
            MGEE S+  KTEPE   +DSVPEE N ++QE E EKP   N      +++   S        A ++E  +H  KKDT  +S  +DA L R+VTEKRLAL+KAWEESEKTKAENRAYK+ SAV  WE+S+KAS+EAQLKK E
Sbjct:    1 MGEEVSS--KTEPELHCVDSVPEEHNSSVQEKELEKPEPPN------DKVTPPS-------PAAAQEVADHASKKDT-EESLDKDAMLARVVTEKRLALVKAWEESEKTKAENRAYKRLSAVGFWEDSKKASVEAQLKKIE 125

The following BLAST results are available for this feature:

BLAST of evm.Ca_v2.0_23072 vs. Araport11
BLAST of evm.Ca_v2.0_23072 vs. ExPASy Swiss-Prot (2024)
BLAST of evm.Ca_v2.0_23072 vs. ExPASy TrEMBL (2024)

BLAST of evm.Ca_v2.0_23072 vs. Araport11
Analysis Date: 2024-07-26 (Blastp of Cicer arietinum cv. CDC Frontier v2.0 proteins vs arabidopsis Araport11)
Total hits: 8

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
\|	2.207e-16	57.58	Symbols: no symbol available \| no full name availa...	[more]
\|	2.377e-16	59.02	Symbols: no symbol available \| no full name availa...	[more]
\|	2.409e-16	59.02	Symbols: no symbol available \| no full name availa...	[more]
\|	3.505e-16	59.02	Symbols: no symbol available \| no full name availa...	[more]
\|	3.383e-14	57.38	Symbols: REM1.2 \| REMORIN 1.2 \| chr3:22675403-2267...	[more]
\|	9.693e-14	55.07	Symbols: Rem1.3 \| Remorin 1.3 \| chr2:18863147-1886...	[more]
\|	9.771e-10	45.90	Symbols: no symbol available \| no full name availa...	[more]
\|	1.670e-9	45.90	Symbols: no symbol available \| no full name availa...	[more]

BLAST of evm.Ca_v2.0_23072 vs. ExPASy Swiss-Prot (2024)
Analysis Date: 2024-07-26 (Blastp of Cicer arietinum cv. CDC Frontier v2.0 proteins vs UniProt Swissprot )
Total hits: 4

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
sp\|P93788\|REMO_SOLTU	2.068e-18	47.57	Remorin OS=Solanum tuberosum OX=4113 PE=1 SV=1	[more]
sp\|Q9FFA5\|RMR14_ARATH	3.408e-15	59.02	Remorin 1.4 OS=Arabidopsis thaliana OX=3702 GN=REM...	[more]
sp\|Q9M2D8\|Y3126_ARATH	3.298e-13	57.38	Uncharacterized protein At3g61260 OS=Arabidopsis t...	[more]
sp\|O80837\|REMO_ARATH	9.433e-13	55.07	Remorin OS=Arabidopsis thaliana OX=3702 GN=DBP PE=...	[more]

BLAST of evm.Ca_v2.0_23072 vs. ExPASy TrEMBL (2024)
Analysis Date: 2024-07-26 (Blastp of Cicer arietinum cv. CDC Frontier v2.0 proteins vs UniProt TrEMBL)
Total hits: 10

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
tr\|A0A1S2YXN6\|A0A1S2YXN6_CICAR	5.023e-93	100.00	Remorin-like isoform X1 OS=Cicer arietinum OX=3827...	[more]
tr\|A0A1S2YXN8\|A0A1S2YXN8_CICAR	6.496e-89	98.55	Remorin-like isoform X2 OS=Cicer arietinum OX=3827...	[more]
tr\|A0A8B8LWF3\|A0A8B8LWF3_ABRPR	1.197e-42	61.43	Remorin-like OS=Abrus precatorius OX=3816 GN=LOC11...	[more]
tr\|A0A9D4YI18\|A0A9D4YI18_PEA	2.152e-41	60.42	Remorin C-terminal domain-containing protein OS=Pi...	[more]
tr\|G7KDE5\|G7KDE5_MEDTR	1.155e-39	62.58	Carboxy-terminal region remorin OS=Medicago trunca...	[more]
tr\|G7KDE4\|G7KDE4_MEDTR	1.064e-37	64.14	Carboxy-terminal region remorin OS=Medicago trunca...	[more]
tr\|I3SR01\|I3SR01_LOTJA	1.681e-37	57.86	Remorin C-terminal domain-containing protein OS=Lo...	[more]
tr\|A0A2K3MN85\|A0A2K3MN85_TRIPR	1.020e-36	66.21	Remorin OS=Trifolium pratense OX=57577 GN=remorin ...	[more]
tr\|V7CK08\|V7CK08_PHAVU	1.673e-31	56.34	Remorin C-terminal domain-containing protein OS=Ph...	[more]
tr\|K7K561\|K7K561_SOYBN	3.692e-31	55.32	Remorin C-terminal domain-containing protein OS=Gl...	[more]

InterPro

Analysis Name: InterProScan Analysis for Cicer arietinum cv. CDC Frontier genome v2.0
Date Performed: 2024-07-26

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005516	Remorin, C-terminal	PFAM	PF03763	Remorin_C	coord: 92..139 e-value: 3.3E-7 score: 41.4
None	No IPR available	PANTHER	PTHR31775	OS02G0117200 PROTEIN	coord: 20..138

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at Ca8_v2.0:1839100..1841027+
coding sequence from alignment at Ca8_v2.0:1839100..1841027+

mRNA sequence

>drCicArie.Frontier.2.0.Ca_v2.0_23072.1 ID=drCicArie.Frontier.2.0.Ca_v2.0_23072.1; Name=evm.Ca_v2.0_23072; organism=Cicer arietinum; type=mRNA; length=447bp
ATGGGAGAAGAAGATTCCAACATCAACAAAACCGAACCAGAGTCTCTCGA
CTCTGTTCCTGAAGAGAATTTCACTATTCAGGAAAATGAGTCAGAGAAAC
CAAATACTCTAAACACTATCAACCATGAATCTAATGAACTCGTCGCTTCT
TCACTTGATCCGAAAGTTGTAGATCATGCTGATAGTAAGGAAACAGGGGA
GCATGATGATAAAAAAGATACTACTAGGGACTCAACTGGTAGAGATGCTG
GGCTTACAAGAATTGTAACAGAGAAAAGATTGGCTTTAATTAAAGCATGG
GAAGAAAGTGAAAAGACAAAAGCAGAAAACAGGGCATACAAGAAACAATC
TGCTGTTGTATTGTGGGAAGAAAGCAGGAAAGCATCTATAGAAGCACAAC
TCAAGAAATTTGAGGTGATTAACTCATGGATTTATGCATGTAAATAG

protein sequence of drCicArie.Frontier.2.0.Ca_v2.0_23072.1

>drCicArie.Frontier.2.0.Ca_v2.0_23072.1 ID=drCicArie.Frontier.2.0.Ca_v2.0_23072.1; Name=drCicArie.Frontier.2.0.Ca_v2.0_23072.1; organism=Cicer arietinum; type=polypeptide; length=148bp
MGEEDSNINKTEPESLDSVPEENFTIQENESEKPNTLNTINHESNELVAS
SLDPKVVDHADSKETGEHDDKKDTTRDSTGRDAGLTRIVTEKRLALIKAW
EESEKTKAENRAYKKQSAVVLWEESRKASIEAQLKKFEVINSWIYACK

mRNA from alignment at Ca8_v2.0:1839100..1841027+

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>drCicArie.Frontier.2.0.Ca_v2.0_23072.1 ID=drCicArie.Frontier.2.0.Ca_v2.0_23072.1; Name=evm.Ca_v2.0_23072; organism=Cicer arietinum; type=mRNA; length=1928bp; location=Sequence derived from: Ca8_v2.0:1839100..1841027+ (Cicer arietinum
CCCTACGTTTGTCAAACAAAAGCCACCCTGTCAAGTTACTTAACATCACC
ACCTAGTTATTTCCAAATTCCAACAAGGAACATTTTCTTCTACTTAATTA
GTACCATTTTTGCTCTTTGCTTAGTTGCTATATATTCAAAGTTTAATACA
ATCATAATATTCATTAACCCTTGTCATAAACCAATTAGCTATCTTTCTTT
GCTATTATCAACCAACTTTTGAAGAAAACAGAAAAAATCATGGGAGAAGA
AGATTCCAACATCAACAAAACCGAACCAGAGTCTCTCGACTCTGTTCCTG
AAGAGAATTTCACTATTCAGGAAAATGAGTCAGAGAAACCAAATACTCTA
AACACTATCAACCATGAATCTAATGAACTCGTCGCTTCTTCACTTGATCC
GAGTAGTTATCTCACTCTTCTAACCAAATTTTACATATCTAATACTTAAC
AACGTGATTAAAGACATATTTTATCTTTATTCGTCTCTTAATTCTATCCT
ATTTGAGTTTTACACTTTTGAGTATTTTATATTTAATGATTTAAGGTGTG
GTCAGTACTTAAAGATATGAAATTTTTTGTACAATTTATTATTTAAAACA
ATATTGGTTGATTTTATTATTTTCATTCATATAGGCAAGAATGAatttgt
atagtctatatatagtactttcatttatttatttattCAACCCATCATGT
TTTTTCATACAGAAGTTGTAGATCATGCTGATAGTAAGGAAACAGGGGAG
CATGATGATAAAAAAGATACTACTAGGGACTCAACTGGTAGAGGTCATTT
TCTAAAATTTTAGTATAATTTTTTTTTGTATGCATAATAGATAGGTAATT
TTTATTTAATTTTTCATTTTATTTCATGATTTCATCAGATGCTGGGCTTA
CAAGAATTGTAACAGAGAAAAGATTGGCTTTAATTAAAGCATGGGAAGAA
AGTGAAAAGACAAAAGCAGAAAACAGGCAAGTGACCATCATATAACATAA
TCTATTAAATTAAATCTATGACTATCTTACTGTTCTTATAAATACACACC
CTTCATGTTTCAATTTGATACTTTTAAGAATGAATTTATCTTCACTCATT
TATCAGGCATCCTATTATCCTATTATTTTAGTAAGAAATTGCTTATATGT
GTGTGTGGACCACAAAATATGATTTATTTTTTTGCCAATATTTAAATCTC
GATAGTTTATGTTTTTTTAATTAGGAAATATAAATCACTTATCTATCTTA
GATTTTCTGCAAGTTCATTATATCTTTTTTCTTTTTTCTGCAAATTCATT
AGAAACGTGTTTAGCAAGAAAACGTTGGTGTACAATTTTGACGTGTATAC
TAGTTTGAAGCTATTTGACTATAATTACAAAACTTTGCCATTAAGAATTG
TTACAAGTAAGTTAATTGTTGAGTAATTTTGTTTTCTAAAACATCGTTTT
ATTTCATATGAAATTTCTTTGGCATTTGCATGACTTTGAAGTGTGGAATG
GACCTTGAAAAATTGAAACTAGTTTAAAATTAATGCATACTTCACTTGCA
TAACATACCCATTTAGATAAAATTTTCAATTTCCCTATCCATTTTGAAAA
CTAAGCTTGATGAAAGTTGAAACTTTCACACAGGGCATACAAGAAACAAT
CTGCTGTTGTATTGTGGGAAGAAAGCAGGAAAGCATCTATAGAAGCACAA
CTCAAGAAATTTGAGGTGATTAACTCATGGATTTATGCATGTAAATAGTT
GTCATAAGTAGCCACTGAGGGGTTGGAACTTATTTAATGCATCAATGAGA
CTGTTTTTCTTTTAAAAGATtagtattttgaaataaaatataaataaaaa
taatatcgaaaaagttgatgtatgtgatcttaatttttaatcagatatat
caatttttctgattactacttttgttta

Coding sequence (CDS) from alignment at Ca8_v2.0:1839100..1841027+

>drCicArie.Frontier.2.0.Ca_v2.0_23072.1 ID=drCicArie.Frontier.2.0.Ca_v2.0_23072.1; Name=evm.Ca_v2.0_23072; organism=Cicer arietinum; type=CDS; length=447bp; location=Sequence derived from: Ca8_v2.0:1839100..1841027+ (Cicer arietinum
ATGGGAGAAGAAGATTCCAACATCAACAAAACCGAACCAGAGTCTCTCGA
CTCTGTTCCTGAAGAGAATTTCACTATTCAGGAAAATGAGTCAGAGAAAC
CAAATACTCTAAACACTATCAACCATGAATCTAATGAACTCGTCGCTTCT
TCACTTGATCCGAAAGTTGTAGATCATGCTGATAGTAAGGAAACAGGGGA
GCATGATGATAAAAAAGATACTACTAGGGACTCAACTGGTAGAGATGCTG
GGCTTACAAGAATTGTAACAGAGAAAAGATTGGCTTTAATTAAAGCATGG
GAAGAAAGTGAAAAGACAAAAGCAGAAAACAGGGCATACAAGAAACAATC
TGCTGTTGTATTGTGGGAAGAAAGCAGGAAAGCATCTATAGAAGCACAAC
TCAAGAAATTTGAGGTGATTAACTCATGGATTTATGCATGTAAATAG

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR005516	Remorin_C

Search form

evm.Ca_v2.0_23072