Cc_v2.0_07391.1

Transcript Overview
NameCc_v2.0_07391.1
Unique NamedrCajCajn.Asha.2.0.Cc_v2.0_07391.1
TypemRNA
OrganismCajanus cajan (pigeon pea)
Sequence length780
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CcLG03_v2.0chromosomeCcLG03_v2.0:40136406..40138187 +Cajanus cajan cv. Asha genome v2.0n/a
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
anccaL0401Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
avjccaL381Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjccaL450Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
anccaL0833Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
carccaL177Cicer arietinum cv. CDC Frontier genome v2.0Cicer arietinum
ccapsR328Pisum sativum Cameor genome v1aPisum sativum
carccaL283Cicer arietinum cv. CDC Frontier genome v2.0Cicer arietinum
ccavrvR311Vigna radiata cv. VC1973A genome v6.0Vigna radiata
ccapvR344Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
ccavrvR373Vigna radiata cv. VC1973A genome v6.0Vigna radiata
ccavfhR329Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
ccapvR388Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
ccavfhR361Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
ccavssR365Vicia sativa cv. Studenica genome v1.0Vicia sativa
ccavssR372Vicia sativa cv. Studenica genome v1.0Vicia sativa
ccavuR259Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
ccavumR333Vigna umbellata FF25 genome v1.0Vigna umbellata
ccavuR319Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
ccavumR414Vigna umbellata FF25 genome v1.0Vigna umbellata
ccccaL0962Cajanus cajan Asha genome v1.0Cajanus cajan
ccavunR226Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
ccapvfR343Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
ccavunR272Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
ccapvfR363Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
ccapvfR397Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris

Orthologs
Gene/TranscriptAssemblySpecies
Vigun01g121100.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
Vum_04G02011.1Vigna umbellata FF25 genome v1.0Vigna umbellata
Vfaba.Hedin2.R1.5g111040.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
Psat3g070200.1Pisum sativum Cameor genome v1aPisum sativum
evm.Ca_v2.0_07341Cicer arietinum cv. CDC Frontier genome v2.0Cicer arietinum
Vigun01g121100.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
rna-TanjilR_06884Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Va03G066650.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
jg32858.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
PvulFLAVERTChr01.897Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
Phvul.001G138700.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
rna-TanjilR_02863Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
rna-XM_014639959.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
rna-KK1_009792Cajanus cajan Asha genome v1.0Cajanus cajan
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Cc_v2.0_07391drCajCajn.Asha.2.0.Cc_v2.0_07391Cajanus cajangene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
cds.Cc_v2.0_07391.1drCajCajn.Asha.2.0.cds.Cc_v2.0_07391.1Cajanus cajanCDS
cds.Cc_v2.0_07391.1drCajCajn.Asha.2.0.cds.Cc_v2.0_07391.1_2Cajanus cajanCDS
cds.Cc_v2.0_07391.1drCajCajn.Asha.2.0.cds.Cc_v2.0_07391.1_3Cajanus cajanCDS
cds.Cc_v2.0_07391.1drCajCajn.Asha.2.0.cds.Cc_v2.0_07391.1_4Cajanus cajanCDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Cc_v2.0_07391.1.exon1drCajCajn.Asha.2.0.Cc_v2.0_07391.1.exon1Cajanus cajanexon
Cc_v2.0_07391.1.exon2drCajCajn.Asha.2.0.Cc_v2.0_07391.1.exon2Cajanus cajanexon
Cc_v2.0_07391.1.exon3drCajCajn.Asha.2.0.Cc_v2.0_07391.1.exon3Cajanus cajanexon
Cc_v2.0_07391.1.exon4drCajCajn.Asha.2.0.Cc_v2.0_07391.1.exon4Cajanus cajanexon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
drCajCajn.Asha.2.0.Cc_v2.0_07391.1drCajCajn.Asha.2.0.Cc_v2.0_07391.1Cajanus cajanpolypeptide
drCajCajn.Asha.2.0.Cc_v2.0_07391.1drCajCajn.Asha.2.0.Cc_v2.0_07391.1-proteinCajanus cajanpolypeptide


Homology
[Close]
BLAST of Cc_v2.0_07391.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A151TU14|A0A151TU14_CAJCA (Protein POLYCHOME OS=Cajanus cajan OX=3821 GN=KK1_009792 PE=4 SV=1)

HSP 1 Score: 443.351 bits (1139), Expect = 2.891e-156
Identity = 229/229 (100.00%), Postives = 229/229 (100.00%), Query Frame = 0 
Query:    1 MPQSRDRRVLPAEDLAAIFARRRAALIFHDHSPPPPRTPAAASRARALHARGSENTPPSGSVRRGRPRVPSRSLLPPWYPRTPLRDITAVVRAIERRRARLGEDQGQRTENAVPAQTQLLPELSQPASASASASASASASASRVSALKSPKSVGVKLRTPLGSKAPKVFLDISDLPEGESETLTPQKKLLNNIDQVEEAVREELKKLKRTPSAKKAEREKRVRTLMSMR 229
            MPQSRDRRVLPAEDLAAIFARRRAALIFHDHSPPPPRTPAAASRARALHARGSENTPPSGSVRRGRPRVPSRSLLPPWYPRTPLRDITAVVRAIERRRARLGEDQGQRTENAVPAQTQLLPELSQPASASASASASASASASRVSALKSPKSVGVKLRTPLGSKAPKVFLDISDLPEGESETLTPQKKLLNNIDQVEEAVREELKKLKRTPSAKKAEREKRVRTLMSMR
Sbjct:    1 MPQSRDRRVLPAEDLAAIFARRRAALIFHDHSPPPPRTPAAASRARALHARGSENTPPSGSVRRGRPRVPSRSLLPPWYPRTPLRDITAVVRAIERRRARLGEDQGQRTENAVPAQTQLLPELSQPASASASASASASASASRVSALKSPKSVGVKLRTPLGSKAPKVFLDISDLPEGESETLTPQKKLLNNIDQVEEAVREELKKLKRTPSAKKAEREKRVRTLMSMR 229
[Close]
BLAST of Cc_v2.0_07391.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A445LBS7|A0A445LBS7_GLYSO (Protein POLYCHOME OS=Glycine soja OX=3848 GN=D0Y65_007135 PE=4 SV=1)

HSP 1 Score: 260.766 bits (665), Expect = 2.409e-84
Identity = 160/233 (68.67%), Postives = 178/233 (76.39%), Query Frame = 0 
Query:    1 MPQSRDRRVLPAEDLAAIFARRRAALIFHDHSPPPPRTP---AAASRARALHARGSENTPPSGSVRRGRPRVPSRSLLPPWYPRTPLRDITAVVRAIERRRARLGEDQGQRTENAVPAQTQLLPELSQPASASASASASASASASRVSALKSPKSVGVKLRTPLGSKAPKVFLDISDLPEG-ESETLTPQKKLLNNIDQVEEAVREELKKLKRTPSAKKAEREKRVRTLMSMR 229
            MP+SRDRR+    DLAA  ARRRA+ I+ D   PP RTP   AA  R RA  + GS+NTPPS + RRGR RVPSR++LP WYPRTPLRDIT VV+AIERRRAR GE +GQR  +  PA  +L+ E S+PASA               SA+KSPKSVGVKLRTP GSK PK+FLDIS+LPE  ESETLTPQKKLLNNIDQVEEAVREELKKLKRTPSAKKAEREKRVRTLMSMR
Sbjct:    1 MPESRDRRIT-VVDLAAAIARRRASFIYIDS--PPLRTPQRTAAIGRGRASGSPGSQNTPPS-TARRGRGRVPSRNVLPAWYPRTPLRDITVVVQAIERRRARSGEAEGQRIGSTDPASDRLVTEPSEPASAD--------------SAVKSPKSVGVKLRTPFGSKVPKIFLDISELPEDDESETLTPQKKLLNNIDQVEEAVREELKKLKRTPSAKKAEREKRVRTLMSMR 215
[Close]
BLAST of Cc_v2.0_07391.1 vs. ExPASy TrEMBL (2024)
Match: tr|I1JNH4|I1JNH4_SOYBN (Protein POLYCHOME OS=Glycine max OX=3847 GN=100816760 PE=4 SV=1)

HSP 1 Score: 260.766 bits (665), Expect = 2.409e-84
Identity = 160/233 (68.67%), Postives = 178/233 (76.39%), Query Frame = 0 
Query:    1 MPQSRDRRVLPAEDLAAIFARRRAALIFHDHSPPPPRTP---AAASRARALHARGSENTPPSGSVRRGRPRVPSRSLLPPWYPRTPLRDITAVVRAIERRRARLGEDQGQRTENAVPAQTQLLPELSQPASASASASASASASASRVSALKSPKSVGVKLRTPLGSKAPKVFLDISDLPEG-ESETLTPQKKLLNNIDQVEEAVREELKKLKRTPSAKKAEREKRVRTLMSMR 229
            MP+SRDRR+    DLAA  ARRRA+ I+ D   PP RTP   AA  R RA  + GS+NTPPS + RRGR RVPSR++LP WYPRTPLRDIT VV+AIERRRAR GE +GQR  +  PA  +L+ E S+PASA               SA+KSPKSVGVKLRTP GSK PK+FLDIS+LPE  ESETLTPQKKLLNNIDQVEEAVREELKKLKRTPSAKKAEREKRVRTLMSMR
Sbjct:    1 MPESRDRRIT-VVDLAAAIARRRASFIYIDS--PPLRTPQRTAAIGRGRASGSPGSQNTPPS-TARRGRGRVPSRNVLPAWYPRTPLRDITVVVQAIERRRARSGEAEGQRIGSTDPASDRLVTEPSEPASAD--------------SAVKSPKSVGVKLRTPFGSKVPKIFLDISELPEDDESETLTPQKKLLNNIDQVEEAVREELKKLKRTPSAKKAEREKRVRTLMSMR 215
[Close]
BLAST of Cc_v2.0_07391.1 vs. ExPASy TrEMBL (2024)
Match: tr|I1N949|I1N949_SOYBN (Protein POLYCHOME OS=Glycine max OX=3847 GN=100805575 PE=4 SV=1)

HSP 1 Score: 242.662 bits (618), Expect = 3.331e-77
Identity = 149/232 (64.22%), Postives = 171/232 (73.71%), Query Frame = 0 
Query:    1 MPQSRDRRVLPAEDLAAIFARRRAALIFHDHSP--PPPRTPAAASRARALHARGSENTPPSGSVRRGRPRVPSRSLLPPWYPRTPLRDITAVVRAIERRRARLGEDQGQRTENAVPAQTQLLPELSQPASASASASASASASASRVSALKSPKSVGVKLRTPLGSKAPKVFLDISDLPE-GESETLTPQKKLLNNIDQVEEAVREELKKLKRTPSAKKAEREKRVRTLMSMR 229
            MPQSR RRV    DLAA  ARRR + IF++      PPRT AA  R RA  +  S+N PPS + RRGR RVP RS+LP W+PRTPLRDITAVV+AIERR ARLGE +GQR  N  PA  +L+           S  +  +++++  SA+KSPKSVGVKLRTP GSK PK+FLDIS+LPE  ESE LTPQKKLL+NIDQVEEAVREEL KLKRTPSAKK EREKRVRTLMSMR
Sbjct:    1 MPQSRHRRVT-VVDLAASLARRRVSFIFNEAPTLRTPPRT-AAFGRGRARASPRSQNIPPS-TARRGRGRVPLRSVLPAWFPRTPLRDITAVVQAIERRSARLGEVEGQRIGNTDPASDRLV-----------SEPSEPASASASASAVKSPKSVGVKLRTPFGSKVPKIFLDISELPEHDESEALTPQKKLLDNIDQVEEAVREELNKLKRTPSAKKTEREKRVRTLMSMR 218
[Close]
BLAST of Cc_v2.0_07391.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A0R0EM47|A0A0R0EM47_SOYBN (Protein POLYCHOME OS=Glycine max OX=3847 GN=100805575 PE=4 SV=1)

HSP 1 Score: 242.662 bits (618), Expect = 3.407e-77
Identity = 149/232 (64.22%), Postives = 171/232 (73.71%), Query Frame = 0 
Query:    1 MPQSRDRRVLPAEDLAAIFARRRAALIFHDHSP--PPPRTPAAASRARALHARGSENTPPSGSVRRGRPRVPSRSLLPPWYPRTPLRDITAVVRAIERRRARLGEDQGQRTENAVPAQTQLLPELSQPASASASASASASASASRVSALKSPKSVGVKLRTPLGSKAPKVFLDISDLPE-GESETLTPQKKLLNNIDQVEEAVREELKKLKRTPSAKKAEREKRVRTLMSMR 229
            MPQSR RRV    DLAA  ARRR + IF++      PPRT AA  R RA  +  S+N PPS + RRGR RVP RS+LP W+PRTPLRDITAVV+AIERR ARLGE +GQR  N  PA  +L+           S  +  +++++  SA+KSPKSVGVKLRTP GSK PK+FLDIS+LPE  ESE LTPQKKLL+NIDQVEEAVREEL KLKRTPSAKK EREKRVRTLMSMR
Sbjct:    1 MPQSRHRRVT-VVDLAASLARRRVSFIFNEAPTLRTPPRT-AAFGRGRARASPRSQNIPPS-TARRGRGRVPLRSVLPAWFPRTPLRDITAVVQAIERRSARLGEVEGQRIGNTDPASDRLV-----------SEPSEPASASASASAVKSPKSVGVKLRTPFGSKVPKIFLDISELPEHDESEALTPQKKLLDNIDQVEEAVREELNKLKRTPSAKKTEREKRVRTLMSMR 218
[Close]
BLAST of Cc_v2.0_07391.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A445FGG0|A0A445FGG0_GLYSO (Protein POLYCHOME (Fragment) OS=Glycine soja OX=3848 GN=D0Y65_051479 PE=4 SV=1)

HSP 1 Score: 243.432 bits (620), Expect = 1.616e-76
Identity = 149/232 (64.22%), Postives = 171/232 (73.71%), Query Frame = 0 
Query:    1 MPQSRDRRVLPAEDLAAIFARRRAALIFHDHSP--PPPRTPAAASRARALHARGSENTPPSGSVRRGRPRVPSRSLLPPWYPRTPLRDITAVVRAIERRRARLGEDQGQRTENAVPAQTQLLPELSQPASASASASASASASASRVSALKSPKSVGVKLRTPLGSKAPKVFLDISDLPE-GESETLTPQKKLLNNIDQVEEAVREELKKLKRTPSAKKAEREKRVRTLMSMR 229
            MPQSR RRV    DLAA  ARRR + IF++      PPRT AA  R RA  +  S+N PPS + RRGR RVP RS+LP W+PRTPLRDITAVV+AIERR ARLGE +GQR  N  PA  +L+           S  +  +++++  SA+KSPKSVGVKLRTP GSK PK+FLDIS+LPE  ESE LTPQKKLL+NIDQVEEAVREEL KLKRTPSAKK EREKRVRTLMSMR
Sbjct:   67 MPQSRHRRVT-VVDLAASLARRRVSFIFNEAPTLRTPPRT-AAFGRGRARASPRSQNIPPS-TARRGRGRVPLRSVLPAWFPRTPLRDITAVVQAIERRSARLGEVEGQRIGNTDPASDRLV-----------SEPSEPASASASASAVKSPKSVGVKLRTPFGSKVPKIFLDISELPEHDESEALTPQKKLLDNIDQVEEAVREELNKLKRTPSAKKTEREKRVRTLMSMR 284
[Close]
BLAST of Cc_v2.0_07391.1 vs. ExPASy TrEMBL (2024)
Match: tr|V7CVZ0|V7CVZ0_PHAVU (Protein POLYCHOME OS=Phaseolus vulgaris OX=3885 GN=PHAVU_001G138700g PE=4 SV=1)

HSP 1 Score: 230.72 bits (587), Expect = 1.576e-72
Identity = 157/229 (68.56%), Postives = 170/229 (74.24%), Query Frame = 0 
Query:    1 MPQSRDRRVLPAEDLAAIFARRRAALIFHDHSPPPPRTPAAASRARALHARGSENTPPSGSVRRGRPRVPSRSLLPPWYPRTPLRDITAVVRAIERRRARLGEDQGQRTENAVPAQTQLLPELSQPASASASASASASASASRVSALKSPKSVGVKLRTPLGSKAPKVFLDISDLPEGESETLTPQKKLLNNIDQVEEAVREELKKLKRTPSAKKAEREKRVRTLMSMR 229
            MPQSRDRRV P  DLAA FAR RA  I++D  P          R R+    GSENTPPS   RR R RVPSRSLLP WYPRTPLRDITA+ RAIERRRARLGE +GQRTE+ V    Q++               S +ASAS  S+ KSPKSVGVKLRTPLG K PK++LDISDLPEGESETLTPQKKLLNNIDQV+EAV EELKKLKRTPSAKKAEREKRVRTLMSMR
Sbjct:    1 MPQSRDRRVTPV-DLAASFARNRAFFIYNDPPPHRTPP-RTLPRGRSRAFLGSENTPPSA--RRSRARVPSRSLLPAWYPRTPLRDITAIARAIERRRARLGEVEGQRTESTVSTADQVV------------LEPSEAASASAASSSKSPKSVGVKLRTPLGCKVPKIYLDISDLPEGESETLTPQKKLLNNIDQVQEAVLEELKKLKRTPSAKKAEREKRVRTLMSMR 213
[Close]
BLAST of Cc_v2.0_07391.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A0S3RXJ3|A0A0S3RXJ3_PHAAN (Protein POLYCHOME OS=Vigna angularis var. angularis OX=157739 GN=Vigan.04G283800 PE=4 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 1.191e-69
Identity = 158/229 (69.00%), Postives = 174/229 (75.98%), Query Frame = 0 
Query:    1 MPQSRDRRVLPAEDLAAIFARRRAALIFHDHSPPPPRTPAAASRARALHARGSENTPPSGSVRRGRPRVPSRSLLPPWYPRTPLRDITAVVRAIERRRARLGEDQGQRTENAVPAQTQLLPELSQPASASASASASASASASRVSALKSPKSVGVKLRTPLGSKAPKVFLDISDLPEGESETLTPQKKLLNNIDQVEEAVREELKKLKRTPSAKKAEREKRVRTLMSMR 229
            MPQSRDRR L + DLAA FAR RA LI++D  P          R RA    GSENTPPS   RR R RV SRSLLP WYPRTPLRDITAV RAIERRRARLGE +GQRTE+ V    Q++ E S+ ASASA++++            KSPKSVGVKLRTPLG K PK++LDIS+LPEGESETLTPQKKLLNNIDQV+EAV EELKKLKRTPSAKKAEREKRVRTLMSMR
Sbjct:    1 MPQSRDRR-LTSVDLAAAFARNRAFLIYNDPPPHRTPP-RTLPRGRARAFLGSENTPPSA--RRTRGRVSSRSLLPAWYPRTPLRDITAVARAIERRRARLGEVEGQRTESTVSTADQVVLEPSETASASAASTS------------KSPKSVGVKLRTPLGCKVPKIYLDISELPEGESETLTPQKKLLNNIDQVQEAVLEELKKLKRTPSAKKAEREKRVRTLMSMR 213
[Close]
BLAST of Cc_v2.0_07391.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A0L9U7M2|A0A0L9U7M2_PHAAN (Protein POLYCHOME Protein UV-B-INSENSITIVE 4 OS=Phaseolus angularis OX=3914 GN=HKW66_Vig0049370 PE=4 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 1.191e-69
Identity = 158/229 (69.00%), Postives = 174/229 (75.98%), Query Frame = 0 
Query:    1 MPQSRDRRVLPAEDLAAIFARRRAALIFHDHSPPPPRTPAAASRARALHARGSENTPPSGSVRRGRPRVPSRSLLPPWYPRTPLRDITAVVRAIERRRARLGEDQGQRTENAVPAQTQLLPELSQPASASASASASASASASRVSALKSPKSVGVKLRTPLGSKAPKVFLDISDLPEGESETLTPQKKLLNNIDQVEEAVREELKKLKRTPSAKKAEREKRVRTLMSMR 229
            MPQSRDRR L + DLAA FAR RA LI++D  P          R RA    GSENTPPS   RR R RV SRSLLP WYPRTPLRDITAV RAIERRRARLGE +GQRTE+ V    Q++ E S+ ASASA++++            KSPKSVGVKLRTPLG K PK++LDIS+LPEGESETLTPQKKLLNNIDQV+EAV EELKKLKRTPSAKKAEREKRVRTLMSMR
Sbjct:    1 MPQSRDRR-LTSVDLAAAFARNRAFLIYNDPPPHRTPP-RTLPRGRARAFLGSENTPPSA--RRTRGRVSSRSLLPAWYPRTPLRDITAVARAIERRRARLGEVEGQRTESTVSTADQVVLEPSETASASAASTS------------KSPKSVGVKLRTPLGCKVPKIYLDISELPEGESETLTPQKKLLNNIDQVQEAVLEELKKLKRTPSAKKAEREKRVRTLMSMR 213
[Close]
BLAST of Cc_v2.0_07391.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0AA86RRC3|A0AA86RRC3_9FABA (Uncharacterized protein OS=Sphenostylis stenocarpa OX=92480 GN=AYBTSS11_LOCUS3413 PE=4 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 1.139e-66
Identity = 156/229 (68.12%), Postives = 170/229 (74.24%), Query Frame = 0 
Query:    1 MPQSRDRRVLPAEDLAAIFARRRAALIFHDHSPPPPRTPAAASRARALHARGSENTPPSGSVRRGRPRVPSRSLLPPWYPRTPLRDITAVVRAIERRRARLGEDQGQRTENAVPAQTQLLPELSQPASASASASASASASASRVSALKSPKSVGVKLRTPLGSKAPKVFLDISDLPEGESETLTPQKKLLNNIDQVEEAVREELKKLKRTPSAKKAEREKRVRTLMSMR 229
            MPQSRDRRV P  DLAA FAR RA  I++D  P        A R RA    GSENTPPS   RR R R+ SRSLLP WYPRTPLRDITAV RAIERRRARLGE +GQR E+ V    QL+ E S+PASAS ++S+ +  S            VGVKLRTPLG K PK++LDISDLPEGESETLTPQKKLLNNIDQV+EAV EELKKLKRTPSAKKAEREKRVRTLMSMR
Sbjct:    1 MPQSRDRRVTPV-DLAAAFARNRAFFIYNDPPPQRTPPRTLA-RGRARAFLGSENTPPS--TRRTRGRIHSRSLLPAWYPRTPLRDITAVARAIERRRARLGEVEGQRIESTVSTADQLVLESSEPASASGASSSKSPKS------------VGVKLRTPLGCKVPKIYLDISDLPEGESETLTPQKKLLNNIDQVQEAVFEELKKLKRTPSAKKAEREKRVRTLMSMR 213
[Close]
BLAST of Cc_v2.0_07391.1 vs. ExPASy Swiss-Prot (2024)
Match: sp|O48533|PYM_ARATH (Protein POLYCHOME OS=Arabidopsis thaliana OX=3702 GN=PYM PE=1 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 8.486e-42
Identity = 87/170 (51.18%), Postives = 107/170 (62.94%), Query Frame = 0 
Query:   60 GSVRRGRPRVPSRSLLPPWYPRTPLRDITAVVRAIERRRARLGEDQGQRTENAVPAQTQLLPELSQPASASASASASASASASRVSALKSPKSVGVKLRTPLGSKAPKVFLDISDLPEGESETLTPQKKLLNNIDQVEEAVREELKKLKRTPSAKKAEREKRVRTLMSMR 229
            G  RRGR R  S S+LP WYPRTPLRDI+AVVRAIERRRAR+GE  G+  E   P Q  +L  L   + A      S       +   K P         P  +K  ++ LDI+    GE + LTP+KKLLN+ID+VE+ V EE++K+K TPSAK+AEREKRVRTLMSMR
Sbjct:   99 GVTRRGRARA-SNSVLPSWYPRTPLRDISAVVRAIERRRARMGEGVGRDIETPTPQQLGVLDSLVPLSGAHLEHDYSMVTPGPSI-GFKRPWP-------PSTAKVHQILLDITRENTGEEDALTPEKKLLNSIDKVEKVVMEEIQKMKSTPSAKRAEREKRVRTLMSMR 259
[Close]
BLAST of Cc_v2.0_07391.1 vs. ExPASy Swiss-Prot (2024)
Match: sp|Q9M2R1|GIG1_ARATH (Protein GIGAS CELL1 OS=Arabidopsis thaliana OX=3702 GN=GIG1 PE=1 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 9.476e-35
Identity = 104/261 (39.85%), Postives = 131/261 (50.19%), Query Frame = 0 
Query:    1 MPQSRDRRVLPAEDLAAIFARRRAALIFHD---------HSPPPPRTPAAA---------------SRARALHA-----RGSENTPPSGSVRRGRPRVPSRSLLPPWYPRTPLRDITAVVRAIERRR-ARLGEDQGQRTENAVPAQTQLLPELSQPASASASASASASASASRVSALKSPKSVGVKLRTPLGS-KAPKVFLDIS-DLPEGESETLTPQKKLLNNIDQVEEAVREELKKLKRTPSAKKAEREKRVRTLMSMR 229
            MP++RDR   P  D + IFA RR   I  D          SP  P   +                    R  H      +G EN P   + RRGR       LLP WYPRTPLRDIT +VRAIERRR A  G D G+  E  +P   Q +  L  P   S            + S +    SVG K   P  + K  K+ LDI+ ++ E E+  +TP+KKLLN+ID+VE+ V  E++KLK TP AK+ EREKRVRTLM+MR
Sbjct:    1 MPEARDRTERPV-DYSTIFANRRRHGILLDEPDSRLSLIESPVNPDIGSIGGTGGLVRGNFTTWRPGNGRGGHTPFRLPQGRENMPIV-TARRGR----GGGLLPSWYPRTPLRDITHIVRAIERRRGAGTGGDDGRVIE--IPTHRQ-VGVLESPVPLSGE---------HKCSMVTPGPSVGFKRSCPPSTAKVQKMLLDITKEIAEEEAGFITPEKKLLNSIDKVEKIVMAEIQKLKSTPQAKREEREKRVRTLMTMR 243
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BLAST of Cc_v2.0_07391.1 vs. Araport11
Match: | (Symbols: PYM, UVI4 | UV-B-INSENSITIVE 4, POLYCHOME | chr2:17602240-17603283 REVERSE LENGTH=259)

HSP 1 Score: 146.747 bits (369), Expect = 8.806e-43
Identity = 87/170 (51.18%), Postives = 107/170 (62.94%), Query Frame = 0 
Query:   60 GSVRRGRPRVPSRSLLPPWYPRTPLRDITAVVRAIERRRARLGEDQGQRTENAVPAQTQLLPELSQPASASASASASASASASRVSALKSPKSVGVKLRTPLGSKAPKVFLDISDLPEGESETLTPQKKLLNNIDQVEEAVREELKKLKRTPSAKKAEREKRVRTLMSMR 229
            G  RRGR R  S S+LP WYPRTPLRDI+AVVRAIERRRAR+GE  G+  E   P Q  +L  L   + A      S       +   K P         P  +K  ++ LDI+    GE + LTP+KKLLN+ID+VE+ V EE++K+K TPSAK+AEREKRVRTLMSMR
Sbjct:   99 GVTRRGRARA-SNSVLPSWYPRTPLRDISAVVRAIERRRARMGEGVGRDIETPTPQQLGVLDSLVPLSGAHLEHDYSMVTPGPSI-GFKRPWP-------PSTAKVHQILLDITRENTGEEDALTPEKKLLNSIDKVEKVVMEEIQKMKSTPSAKRAEREKRVRTLMSMR 259
[Close]
BLAST of Cc_v2.0_07391.1 vs. Araport11
Match: | (Symbols: PYM, UVI4 | UV-B-INSENSITIVE 4, POLYCHOME | chr2:17602240-17603283 REVERSE LENGTH=259)

HSP 1 Score: 146.747 bits (369), Expect = 8.806e-43
Identity = 87/170 (51.18%), Postives = 107/170 (62.94%), Query Frame = 0 
Query:   60 GSVRRGRPRVPSRSLLPPWYPRTPLRDITAVVRAIERRRARLGEDQGQRTENAVPAQTQLLPELSQPASASASASASASASASRVSALKSPKSVGVKLRTPLGSKAPKVFLDISDLPEGESETLTPQKKLLNNIDQVEEAVREELKKLKRTPSAKKAEREKRVRTLMSMR 229
            G  RRGR R  S S+LP WYPRTPLRDI+AVVRAIERRRAR+GE  G+  E   P Q  +L  L   + A      S       +   K P         P  +K  ++ LDI+    GE + LTP+KKLLN+ID+VE+ V EE++K+K TPSAK+AEREKRVRTLMSMR
Sbjct:   99 GVTRRGRARA-SNSVLPSWYPRTPLRDISAVVRAIERRRARMGEGVGRDIETPTPQQLGVLDSLVPLSGAHLEHDYSMVTPGPSI-GFKRPWP-------PSTAKVHQILLDITRENTGEEDALTPEKKLLNSIDKVEKVVMEEIQKMKSTPSAKRAEREKRVRTLMSMR 259
[Close]
BLAST of Cc_v2.0_07391.1 vs. Araport11
Match: | (Symbols: UVI4-LIKE, GIG1, OSD1 | GIGAS CELL 1, UV-B-insensitive 4-like, OMISSION OF SECOND DIVISION | chr3:21426733-21427821 FORWARD LENGTH=243)

HSP 1 Score: 127.872 bits (320), Expect = 9.822e-36
Identity = 104/261 (39.85%), Postives = 131/261 (50.19%), Query Frame = 0 
Query:    1 MPQSRDRRVLPAEDLAAIFARRRAALIFHD---------HSPPPPRTPAAA---------------SRARALHA-----RGSENTPPSGSVRRGRPRVPSRSLLPPWYPRTPLRDITAVVRAIERRR-ARLGEDQGQRTENAVPAQTQLLPELSQPASASASASASASASASRVSALKSPKSVGVKLRTPLGS-KAPKVFLDIS-DLPEGESETLTPQKKLLNNIDQVEEAVREELKKLKRTPSAKKAEREKRVRTLMSMR 229
            MP++RDR   P  D + IFA RR   I  D          SP  P   +                    R  H      +G EN P   + RRGR       LLP WYPRTPLRDIT +VRAIERRR A  G D G+  E  +P   Q +  L  P   S            + S +    SVG K   P  + K  K+ LDI+ ++ E E+  +TP+KKLLN+ID+VE+ V  E++KLK TP AK+ EREKRVRTLM+MR
Sbjct:    1 MPEARDRTERPV-DYSTIFANRRRHGILLDEPDSRLSLIESPVNPDIGSIGGTGGLVRGNFTTWRPGNGRGGHTPFRLPQGRENMPIV-TARRGR----GGGLLPSWYPRTPLRDITHIVRAIERRRGAGTGGDDGRVIE--IPTHRQ-VGVLESPVPLSGE---------HKCSMVTPGPSVGFKRSCPPSTAKVQKMLLDITKEIAEEEAGFITPEKKLLNSIDKVEKIVMAEIQKLKSTPQAKREEREKRVRTLMTMR 243
The following BLAST results are available for this feature:
BLAST of Cc_v2.0_07391.1 vs. ExPASy TrEMBL (2024)
Analysis Date: 2024-07-30 (Blastp of Cajanus cajan cv. Asha v2.0 proteins vs UniProt TrEMBL)
Total hits: 10
Match NameE-valueIdentityDescription
tr|A0A151TU14|A0A151TU14_CAJCA2.891e-156100.00Protein POLYCHOME OS=Cajanus cajan OX=3821 GN=KK1_... [more]
tr|A0A445LBS7|A0A445LBS7_GLYSO2.409e-8468.67Protein POLYCHOME OS=Glycine soja OX=3848 GN=D0Y65... [more]
tr|I1JNH4|I1JNH4_SOYBN2.409e-8468.67Protein POLYCHOME OS=Glycine max OX=3847 GN=100816... [more]
tr|I1N949|I1N949_SOYBN3.331e-7764.22Protein POLYCHOME OS=Glycine max OX=3847 GN=100805... [more]
tr|A0A0R0EM47|A0A0R0EM47_SOYBN3.407e-7764.22Protein POLYCHOME OS=Glycine max OX=3847 GN=100805... [more]
tr|A0A445FGG0|A0A445FGG0_GLYSO1.616e-7664.22Protein POLYCHOME (Fragment) OS=Glycine soja OX=38... [more]
tr|V7CVZ0|V7CVZ0_PHAVU1.576e-7268.56Protein POLYCHOME OS=Phaseolus vulgaris OX=3885 GN... [more]
tr|A0A0S3RXJ3|A0A0S3RXJ3_PHAAN1.191e-6969.00Protein POLYCHOME OS=Vigna angularis var. angulari... [more]
tr|A0A0L9U7M2|A0A0L9U7M2_PHAAN1.191e-6969.00Protein POLYCHOME Protein UV-B-INSENSITIVE 4 OS=Ph... [more]
tr|A0AA86RRC3|A0AA86RRC3_9FABA1.139e-6668.12Uncharacterized protein OS=Sphenostylis stenocarpa... [more]
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BLAST of Cc_v2.0_07391.1 vs. ExPASy Swiss-Prot (2024)
Analysis Date: 2024-07-30 (Blastp of Cajanus cajan cv. Asha v2.0 proteins vs UniProt Swissprot )
Total hits: 2
Match NameE-valueIdentityDescription
sp|O48533|PYM_ARATH8.486e-4251.18Protein POLYCHOME OS=Arabidopsis thaliana OX=3702 ... [more]
sp|Q9M2R1|GIG1_ARATH9.476e-3539.85Protein GIGAS CELL1 OS=Arabidopsis thaliana OX=370... [more]
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BLAST of Cc_v2.0_07391.1 vs. Araport11
Analysis Date: 2024-07-30 (Blastp of Cajanus cajan cv. Asha v2.0 proteins vs arabidopsis Araport11)
Total hits: 3
Match NameE-valueIdentityDescription
|8.806e-4351.18Symbols: PYM, UVI4 | UV-B-INSENSITIVE 4, POLYCHOME... [more]
|8.806e-4351.18Symbols: PYM, UVI4 | UV-B-INSENSITIVE 4, POLYCHOME... [more]
|9.822e-3639.85Symbols: UVI4-LIKE, GIG1, OSD1 | GIGAS CELL 1, UV-... [more]
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InterPro
Analysis Name: InterProScan Analysis for Cajanus cajan cv. Asha genome v2.0
Date Performed: 2024-07-30
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR034590POLYCHOME/GIGAS CELL1PANTHERPTHR35119PROTEIN POLYCHOMEcoord: 1..229

Sequences
The following sequences are available for this feature:

mRNA sequence

>drCajCajn.Asha.2.0.Cc_v2.0_07391.1 ID=drCajCajn.Asha.2.0.Cc_v2.0_07391.1; Name=Cc_v2.0_07391.1; organism=Cajanus cajan; type=mRNA; length=780bp
ATGCCCCAATCACGTGACCGACGCGTACTCCCCGCCGAAGACCTCGCCGC
AATCTTCGCCCGCCGCCGCGCCGCCCTCATCTTCCACGACCACTCTCCTC
CCCCTCCAAGAACACCCGCCGCCGCCTCCCGCGCACGCGCTCTCCACGCG
CGGGGCTCCGAGAACACTCCTCCCTCCGGAAGTGTCCGACGCGGAAGGCC
GCGCGTTCCCTCACGCTCCCTCCTACCTCCTTGGTACCCCCGCACCCCGC
TCCGCGACATCACCGCCGTCGTTAGGGCCATTGAGAGAAGGAGAGCTAGG
TTAGGGGAAGACCAAGGCCAGCGAACTGAGAACGCTGTTCCCGCCCAGAC
TCAACTGCTTCCAGAACTTTCTCAACctgcgtctgcgtctgcgtctgcgt
ccgcgtcCGCCTCAGCTTCAGCGTCTAGGGTTTCTGCGTTGAAATCTCCC
AAATCCGTTGGTGTTAAGCTCCGAACACCTCTCGGGAGCAAAGCGCCCAA
GGTTTTTCTCGATATCTCTGATCTTCCCGAAGGGGAATCGGAAACTCTCA
CGCCGCAGAAGAAGCTTCTCAACAACATTGACCAAGTTGAGGAGGCTGTT
CGTGAAGAGTTGAAGAAGCTCAAGAGAACTCCCAGTGCCAAGAAAGCAGA
AAGGGAAAAGCGCGTTCGCACTTTGATGTCTATGAGAAGAGAAGCTGAAC
TTGATTTGGACCTGCTTGCAAAATGGTTTTATAATAACCGAAGCATTGTG
CTTTTGCCCCGTTTGGAAGGTCCGCAATAA
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protein sequence of drCajCajn.Asha.2.0.Cc_v2.0_07391.1

>drCajCajn.Asha.2.0.Cc_v2.0_07391.1 ID=drCajCajn.Asha.2.0.Cc_v2.0_07391.1; Name=drCajCajn.Asha.2.0.Cc_v2.0_07391.1; organism=Cajanus cajan; type=polypeptide; length=259bp
MPQSRDRRVLPAEDLAAIFARRRAALIFHDHSPPPPRTPAAASRARALHA
RGSENTPPSGSVRRGRPRVPSRSLLPPWYPRTPLRDITAVVRAIERRRAR
LGEDQGQRTENAVPAQTQLLPELSQPASASASASASASASASRVSALKSP
KSVGVKLRTPLGSKAPKVFLDISDLPEGESETLTPQKKLLNNIDQVEEAV
REELKKLKRTPSAKKAEREKRVRTLMSMRREAELDLDLLAKWFYNNRSIV
LLPRLEGPQ
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mRNA from alignment at CcLG03_v2.0:40136406..40138187+

Legend: CDSexonpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>drCajCajn.Asha.2.0.Cc_v2.0_07391.1 ID=drCajCajn.Asha.2.0.Cc_v2.0_07391.1; Name=Cc_v2.0_07391.1; organism=Cajanus cajan; type=mRNA; length=1782bp; location=Sequence derived from: CcLG03_v2.0:40136406..40138187+ (Cajanus cajan
ATGCCCCAATCACGTGACCGACGCGTACTCCCCGCCGAAGACCTCGCCGC
AATCTTCGCCCGCCGCCGCGCCGCCCTCATCTTCCACGACCACTCTCCTC
CCCCTCCAAGAACACCCGCCGCCGCCTCCCGCGCACGCGCTCTCCACGCG
CGGGGCTCCGAGAACACTCCTCCCTCCGGAAGTGTCCGACGCGGAAGGCC
GCGCGTTCCCTCACGCTCCCTCCTACCTCCTTGGTACCCCCGCACCCCGC
TCCGCGACATCACCGCCGTCGTTAGGGTAAGTTTAACCCTAAACCCCAAA
ACGCCACGtcgtttcgcttctttcgtttttgtttcgctctttgcttcatt
tcgatcttttgcgtttAGGCCATTGAGAGAAGGAGAGCTAGGTTAGGGGA
AGACCAAGGCCAGCGAACTGAGAACGCTGTTCCCGCCCAGACTCAACTGC
TTCCAGAACTTTCTCAACctgcgtctgcgtctgcgtctgcgtccgcgtcC
GCCTCAGCTTCAGCGTCTAGGGTTTCTGCGTTGAAATCTCCCAAATCCGT
TGGTGTTAAGCTCCGAACACCTCTCGGGAGCAAAGCGCCCAAGGTTTTTC
TCGATATCTCTGATCTTCCCGAAGGGGAATCGGAAACTCTCACGCCGCAG
AAGAAGCTTCTCAACAACATTGACCAAGTTGAGGAGGCTGTTCGTGAAGA
GTTGAAGAAGCTCAAGAGAACTCCCAGTGCCAAGAAAGCAGAAAGGGAAA
AGCGCGTTCGCACTTTGATGTCTATGAGGTGAATTGGATAATTGAATAAT
TCGAAGAAAATAATAATAAAAAAAAATAACTTAGATTGGATTATACAGAG
CCAGAGGCTGCAGCGCAGGCGAGTTAAAATTTGTTCTCTGGAGGTTGATT
CAGCTGGGATAGTGTTTTTCGATTTGCTTAGTTTGCATCTGCGACTTGAA
GGTGCAAGATTGATATTCTTTATAGTTGTTCTAATTTCTTGGTTAGAGCT
TCTTGGAGCAGGTTGATAGATAGCATGCCCTATTATCTTTTCCATCATTC
TTTGATGGTTTTGGTTAGGTTTGGTTGGGGTAGTTGTTGTTATCCCCGGG
CCCTGTACATATTTTCGATGTATTTTCAGTTGGGGATGATACTTGTGTAC
CAATTGATAATGTGTTCAAGAAGATTAATGCTTCATTTTTGGGTACAAAC
TTCACTCCATTTCTTGATTTGTCTTACCTTTGTCATATATGGAACCGTGT
CTTATAACTCGAGGTCTGCTAAAAATAAGAAAACAGGTTTTAGTTTGTGC
AAATGGGTAGCTGAACTTGGTTTTGGCCTTTTTGGTAAATGGTTTAGTTT
AAATTAAACAGCACACGCACAATCAATGAGTTTACTAGTTAACATGTGAT
GAAATGGAGGTAACAGAGGACTCCGATGAAAATGAATTTTCTGCTAATCA
TGATATACCCATTTTTTGACAAGTGAGTTAAACTGTGCAAAGAGGTTGTT
GCTTGATTTTATGGGTACAACTACTAACTTTCCATTTCTTGGAATGTTGT
TTTCACTCATAAAAATCCATTCCACCATCTTTGTTGCAGAAGAGAAGCTG
AACTTGATTTGGACCTGCTTGCAAAATGGTTTTATAATAACCGAAGGTCT
GTTAAAAGTTTATTTTCAGGGATGTCATGGTAACCAATGTGTTATTTCTG
CTATCCATAATCAACCCATTTTTTTTTACGTGTTTGTTTCAGTAGCATTG
TGCTTTTGCCCCGTTTGGAAGGTCCGCAATAA
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Coding sequence (CDS) from alignment at CcLG03_v2.0:40136406..40138187+

>drCajCajn.Asha.2.0.Cc_v2.0_07391.1 ID=drCajCajn.Asha.2.0.Cc_v2.0_07391.1; Name=Cc_v2.0_07391.1; organism=Cajanus cajan; type=CDS; length=780bp; location=Sequence derived from: CcLG03_v2.0:40136406..40138187+ (Cajanus cajan
ATGCCCCAATCACGTGACCGACGCGTACTCCCCGCCGAAGACCTCGCCGC
AATCTTCGCCCGCCGCCGCGCCGCCCTCATCTTCCACGACCACTCTCCTC
CCCCTCCAAGAACACCCGCCGCCGCCTCCCGCGCACGCGCTCTCCACGCG
CGGGGCTCCGAGAACACTCCTCCCTCCGGAAGTGTCCGACGCGGAAGGCC
GCGCGTTCCCTCACGCTCCCTCCTACCTCCTTGGTACCCCCGCACCCCGC
TCCGCGACATCACCGCCGTCGTTAGGGCCATTGAGAGAAGGAGAGCTAGG
TTAGGGGAAGACCAAGGCCAGCGAACTGAGAACGCTGTTCCCGCCCAGAC
TCAACTGCTTCCAGAACTTTCTCAACctgcgtctgcgtctgcgtctgcgt
ccgcgtcCGCCTCAGCTTCAGCGTCTAGGGTTTCTGCGTTGAAATCTCCC
AAATCCGTTGGTGTTAAGCTCCGAACACCTCTCGGGAGCAAAGCGCCCAA
GGTTTTTCTCGATATCTCTGATCTTCCCGAAGGGGAATCGGAAACTCTCA
CGCCGCAGAAGAAGCTTCTCAACAACATTGACCAAGTTGAGGAGGCTGTT
CGTGAAGAGTTGAAGAAGCTCAAGAGAACTCCCAGTGCCAAGAAAGCAGA
AAGGGAAAAGCGCGTTCGCACTTTGATGTCTATGAGAAGAGAAGCTGAAC
TTGATTTGGACCTGCTTGCAAAATGGTTTTATAATAACCGAAGCATTGTG
CTTTTGCCCCGTTTGGAAGGTCCGCAATAA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR034590POLYCHOME/GIG1
Vocabulary: Biological Process
TermDefinition
GO:0051783regulation of nuclear division
GO:1904667negative regulation of ubiquitin protein ligase activity
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus